View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3383_high_1 (Length: 618)
Name: NF3383_high_1
Description: NF3383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3383_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 449 - 553
Target Start/End: Complemental strand, 11666178 - 11666074
Alignment:
| Q |
449 |
caaaaaaggaggagaaataacggcacgctcaaaaagcaacataacttatgaaaacccaaaataaaccacccacgaactagggtggatttctaaaggctta |
548 |
Q |
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| T |
11666178 |
caaaaaaggaggagaaatagcggcacgctcaaaaaacaacataacttatgaaaacccaaaataaaccacccacgaactagggtggatttctaaaggctta |
11666079 |
T |
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| Q |
549 |
agaaa |
553 |
Q |
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||||| |
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| T |
11666078 |
agaaa |
11666074 |
T |
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Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 555 - 600
Target Start/End: Complemental strand, 11666030 - 11665985
Alignment:
| Q |
555 |
acctaacccatattcttaatgatatctttatatatcatgagccaca |
600 |
Q |
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| T |
11666030 |
acctaacccatattcttaatgatatctttatatatcatgagccaca |
11665985 |
T |
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