View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3383_high_2 (Length: 400)

Name: NF3383_high_2
Description: NF3383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3383_high_2
NF3383_high_2
[»] chr1 (3 HSPs)
chr1 (305-400)||(38709328-38709423)
chr1 (1-107)||(38709016-38709122)
chr1 (182-236)||(38709204-38709258)
[»] chr5 (2 HSPs)
chr5 (312-400)||(39368219-39368307)
chr5 (197-225)||(29685002-29685030)
[»] chr8 (2 HSPs)
chr8 (305-386)||(8045010-8045091)
chr8 (305-356)||(1578157-1578208)
[»] chr7 (1 HSPs)
chr7 (312-400)||(2569582-2569671)
[»] chr4 (1 HSPs)
chr4 (313-356)||(26500870-26500913)
[»] chr3 (1 HSPs)
chr3 (327-364)||(17332927-17332964)


Alignment Details
Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 305 - 400
Target Start/End: Original strand, 38709328 - 38709423
Alignment:
Q  305 caagggactaggatcgaggctgtttagatctccctcagcctcttggtggttctctgttcaactgtctttttgttctgtttgtatttgtttcgttgt 400  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38709328 caagggactagggtcgaggctgtttagatctccctcagcctcttggtggttctctgttcaactgtctttttgttctgtttgtatttgttttgttgt 38709423  T

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Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 38709016 - 38709122
Alignment:
Q  1 agacggttgatcgatctgttttcactttgcaccgttggtgaaggagtgagcttccaacgtcgtcgagagggtgatttgttcttggaggctattgtttatt 100  Q
    ||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||    
T  38709016 agacggttgatcgatctgttttctctccgcaccgttggtgaaggagtgagcttccaacgtcttcgagagggtgttttgttcttggaggctattgtttttt 38709115  T
Q  101 tttattt 107  Q
    |||||||    
T  38709116 tttattt 38709122  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 38709204 - 38709258
Alignment:
Q  182 gttcgtgtctactggttgtcgtgtttaggagctccggatcttctatgtgctcagc 236  Q
    |||||||||| | ||||||||||||||||||||||||||||||| ||||||||||    
T  38709204 gttcgtgtctgccggttgtcgtgtttaggagctccggatcttctctgtgctcagc 38709258  T

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Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 312 - 400
Target Start/End: Original strand, 39368219 - 39368307
Alignment:
Q  312 ctaggatcgaggctgtttagatctccctcagcctcttggtggttctctgttcaactgtctttttgttctgtttgtatttgtttcgttgt 400  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||| | |||||| ||| ||||||| |||||    
T  39368219 ctagggtcgaggctgtttagatctccctcagcctcttggtggttctctgttaagctgtctttctattctgtctgtgtttgttttgttgt 39368307  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 225
Target Start/End: Original strand, 29685002 - 29685030
Alignment:
Q  197 ttgtcgtgtttaggagctccggatcttct 225  Q
    |||||||||||||||||||||||||||||    
T  29685002 ttgtcgtgtttaggagctccggatcttct 29685030  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 305 - 386
Target Start/End: Complemental strand, 8045091 - 8045010
Alignment:
Q  305 caagggactaggatcgaggctgtttagatctccctcagcctcttggtggttctctgttcaactgtctttttgttctgtttgt 386  Q
    |||||||||||| |||||| |||||||||||||||| | |||||| ||||||| ||||||  ||||||||||||||||||||    
T  8045091 caagggactagggtcgaggttgtttagatctccctccgtctcttgatggttctatgttcagttgtctttttgttctgtttgt 8045010  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 356
Target Start/End: Original strand, 1578157 - 1578208
Alignment:
Q  305 caagggactaggatcgaggctgtttagatctccctcagcctcttggtggttc 356  Q
    |||||||||||| ||||||||| |||||||||||||||||| ||||||||||    
T  1578157 caagggactagggtcgaggctggttagatctccctcagccttttggtggttc 1578208  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 312 - 400
Target Start/End: Original strand, 2569582 - 2569671
Alignment:
Q  312 ctaggatcgaggctgtttagatctccctcagcctcttggtgg-ttctctgttcaactgtctttttgttctgtttgtatttgtttcgttgt 400  Q
    ||||| ||||| |||||||||||||||||||||||||||||| |||| ||||||  ||||||| |||||||| ||| ||||||| |||||    
T  2569582 ctagggtcgagactgtttagatctccctcagcctcttggtggtttctttgttcagttgtctttctgttctgtctgtgtttgttttgttgt 2569671  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 313 - 356
Target Start/End: Complemental strand, 26500913 - 26500870
Alignment:
Q  313 taggatcgaggctgtttagatctccctcagcctcttggtggttc 356  Q
    |||| |||||||||| ||||||||||||||||| ||||||||||    
T  26500913 tagggtcgaggctgtctagatctccctcagccttttggtggttc 26500870  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 364
Target Start/End: Complemental strand, 17332964 - 17332927
Alignment:
Q  327 tttagatctccctcagcctcttggtggttctctgttca 364  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  17332964 tttagatctccctcatcctcttggtggttctctattca 17332927  T

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