View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3383_high_4 (Length: 253)
Name: NF3383_high_4
Description: NF3383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3383_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 40768806 - 40769028
Alignment:
| Q |
16 |
aggatagaacggtatgaagtcgcgggaaaatggagagctaggatgacaatggctggattcagttcatcaccaatgagtacaaatgtgagtgatgaaatcc |
115 |
Q |
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| T |
40768806 |
aggatagaacggtatgaagtcgcgggaaaatggagagctaggatgacaatggctggattcagttcatcaccaatgagtacaaatgtgagtgatgaaatcc |
40768905 |
T |
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| Q |
116 |
aaaaacaagttaagttgtactgtgataggtacaagataaaggaggaaaagggcgcacttcattttggttgggaagacaaaaacttgattgctgcttcagc |
215 |
Q |
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| T |
40768906 |
aaaaacaagttaagttgtactgtgataggtacaagataaaggaggaaaagggcgcacttcattttggttgggaagacaaaaacttgattgttgctgcagc |
40769005 |
T |
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| Q |
216 |
atggaggtgaccaagataataat |
238 |
Q |
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| T |
40769006 |
atggaggtgaccaagataataat |
40769028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 10092969 - 10092763
Alignment:
| Q |
19 |
atagaacggtatgaagtcgcgggaaaatggagagctaggatgacaatggctggattcagttcatcaccaatgagtacaaatgtgagtgatgaaatccaaa |
118 |
Q |
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| T |
10092969 |
atagaaaggtatgaagtcgctggaaaatggagggcaaggatgaaaatggctggattcacttcatcaccaatgagcacaaatgtgaaagaagcaattagag |
10092870 |
T |
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| Q |
119 |
aacaagttaagttgtactgtgataggtacaagataaaggaggaaaagggcgcacttcattttggttgggaagacaaaaacttgattgctgcttcagcatg |
218 |
Q |
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| T |
10092869 |
aactcattaggcagtactgtgacaagtacaagataatagaggaaatggggggacttcattttgggtgggaagacaaaaacttgattgttgcttcagcatg |
10092770 |
T |
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| Q |
219 |
gaggtga |
225 |
Q |
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| T |
10092769 |
gaagtga |
10092763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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