View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3383_low_2 (Length: 425)
Name: NF3383_low_2
Description: NF3383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3383_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 410
Target Start/End: Original strand, 29856 - 30249
Alignment:
| Q |
18 |
tataaaatatggtaaactaaaattcacttaaagagagcgnnnnnnnnn--gctcttttgaatcacctatagtcgattatacaatgttcaaattataggtc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
29856 |
tataaaatatggtaaactaaaattcacttaaagagagctaaaaaaaaaaagctcttttgaatcatctatagtcgattatacaatgttcaaattataggtc |
29955 |
T |
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| Q |
116 |
attagattatgatatataaaaattatctctcttgatttaacaatctatagccggatgcaccatacaggtgataggccaacgcaataactttcaatagata |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29956 |
attagattatgatatataaaaattatctctcttgatttaacaatctatagccggatgcaccatacaggtgataggccaacgcaataactttcaatagata |
30055 |
T |
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| Q |
216 |
atgaggcttaaaagtaaattttaataaattaaaacttattgtatacatatggggccttttttaatttataaaaacttatcccagattatttttattagtg |
315 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30056 |
atgaggcttaaa-gtaaattttaataaattaaaacttattgtatacatatggggccttttttaatttataaaaacttatcccagattatttttattagtg |
30154 |
T |
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| Q |
316 |
aaccacaacttagggattcaggagctttacccttgaatcgaccctaacagttgattgtagggatcttactaattagttgcacattgatgagtaat |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30155 |
aaccacaacttagggattcaggagctttacccttgaatcgaccctaacagttgattgtagggatcttactaattagttgcacattgatgggtaat |
30249 |
T |
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