View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3383_low_4 (Length: 332)
Name: NF3383_low_4
Description: NF3383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3383_low_4 |
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| [»] scaffold0141 (1 HSPs) |
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Alignment Details
Target: scaffold0141 (Bit Score: 146; Significance: 7e-77; HSPs: 1)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 11 - 156
Target Start/End: Original strand, 6184 - 6329
Alignment:
| Q |
11 |
agcagagattagattcttattcttctctttgctttggtaccagccttgatatctcaatcttgcaaggcacgacaggcatcggaacgaactccgcggagag |
110 |
Q |
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| T |
6184 |
agcagagattagattcttattcttctctttgctttggtaccagccttgatatctcaatcttgcaaggcacgacaggcatcggaacgaactccgcggagag |
6283 |
T |
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| Q |
111 |
ccactctttggtccaataaagagacagatcagcatccatagaatct |
156 |
Q |
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| T |
6284 |
ccactctttggtccaataaagagacagatcagcatccatagaatct |
6329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 146; Significance: 7e-77; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 49238086 - 49237921
Alignment:
| Q |
11 |
agcagagattagattcttattcttctctttgctttggtaccagccttgatatctcaatcttgcaaggcacgacaggcatcggaacgaactccgcggagag |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||| |
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| T |
49238086 |
agcagagattagattcttattcttctctttgctttggtaccagccttgatatctcaatcttgcaaggtacgacatgcattggaacgaactccgcggagag |
49237987 |
T |
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| Q |
111 |
ccactctttggtccaataaagagacagatcagcatccatagaatctatctagaaagaggcagtctg |
176 |
Q |
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| T |
49237986 |
ccactctttggtccaataaagagacagatcatcatccatagaatctatctagaaataggcagtctg |
49237921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 44285603 - 44285713
Alignment:
| Q |
222 |
ttcttaccggaagttacatttaagaatatatccattaaaggaagattggacaatggggatctttacctaaaggtgcggagcgaagtctgcatttcttgct |
321 |
Q |
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| T |
44285603 |
ttcttaccggaagttacattgaagaatatatccattaaaggaagattggccaatggggatctttacctaacgatgcggagcaaattcggcatttcttgct |
44285702 |
T |
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| Q |
322 |
agttcttctcc |
332 |
Q |
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||||||||||| |
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| T |
44285703 |
agttcttctcc |
44285713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 222 - 332
Target Start/End: Complemental strand, 44070410 - 44070300
Alignment:
| Q |
222 |
ttcttaccggaagttacatttaagaatatatccattaaaggaagattggacaatggggatctttacctaaaggtgcggagcgaagtctgcatttcttgct |
321 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||| | ||||||||||| || |||||||||||| |
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| T |
44070410 |
ttcttaccagaagttacattgaagaatatatccattaaagcaagattggacaatggagatctttaccttacaatgcggagcgaattcggcatttcttgct |
44070311 |
T |
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| Q |
322 |
agttcttctcc |
332 |
Q |
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||||||||||| |
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| T |
44070310 |
agttcttctcc |
44070300 |
T |
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