View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3383_low_9 (Length: 236)
Name: NF3383_low_9
Description: NF3383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3383_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 133; Significance: 3e-69; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 88 - 220
Target Start/End: Complemental strand, 31565451 - 31565319
Alignment:
| Q |
88 |
ttggcgtctaatcaacatttggttattatgatttctgttttcaaaattgatctcactctgttgtatacttcttcctatgaaaatgcaacaaatacttttc |
187 |
Q |
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| T |
31565451 |
ttggcgtctaatcaacatttggttattatgatttctgttttcaaaattgatctcactctgttgtatacttcttcctatgaaaatgcaacaaatacttttc |
31565352 |
T |
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| Q |
188 |
ttgaaaactttttaagctataattgtttctcca |
220 |
Q |
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| T |
31565351 |
ttgaaaactttttaagctataattgtttctcca |
31565319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 195
Target Start/End: Original strand, 33414090 - 33414254
Alignment:
| Q |
39 |
aattcagacctcatctatcctcgatagagatacatatcagtaaaatgtattggcgtctaatcaacatttggttattatga---------tttctgttttc |
129 |
Q |
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| T |
33414090 |
aattcagtcctcatgtatcctcaatacagatacagatcagtaaaacgtgtccgcgcctaatcaacatttggttattatgaagaagcagatttctgttt-c |
33414188 |
T |
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| Q |
130 |
aaaattgatctcactctgttgtatacttcttcctatgaaaatgcaacaaatacttttcttgaaaac |
195 |
Q |
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| T |
33414189 |
aaaattggtctcactctgccgcatacttcttcctatgaaaatgcaacgattacttctcttgaaaac |
33414254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 31565499 - 31565454
Alignment:
| Q |
1 |
atgagaagtaacaaatgttaagaattaatgaaacaaacaattcaga |
46 |
Q |
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| T |
31565499 |
atgagaagtaacaaatgttaagaattaatgaaacaaacaattcaga |
31565454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 207
Target Start/End: Original strand, 33351212 - 33351363
Alignment:
| Q |
69 |
tacatatcagtaaaatgtattggcgtctaatcaacatttggttattatga---------tttctgttttcaaaa-ttgatctcactctgttgtatacttc |
158 |
Q |
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|||| ||||||||||||| | ||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||| | | ||||||| |
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| T |
33351212 |
tacagatcagtaaaatgtgtccgcgcctaatcaacatttggttattatgaagaacaagatttctgttttcaaaaattgatctcactccgcagcatacttc |
33351311 |
T |
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| Q |
159 |
ttcctatgaaaatgca---acaaatacttttcttgaaaactttttaagctat |
207 |
Q |
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| T |
33351312 |
ttcctatgaaaatgcaaagacaaatacttgtcttgaaagcgttgtaagctat |
33351363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 33413973 - 33414021
Alignment:
| Q |
1 |
atgagaagtaacaaatgttaagaattaatgaaacaaacaattcagacct |
49 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
33413973 |
atgataagtaacaaatgtcaagaattaatgaaacaaacaattcaaacct |
33414021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 33351078 - 33351120
Alignment:
| Q |
7 |
agtaacaaatgttaagaattaatgaaacaaacaattcagacct |
49 |
Q |
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| T |
33351078 |
agtaacaaatgtcaagaattaatgaaacaaacaattcaaacct |
33351120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 17446026 - 17445951
Alignment:
| Q |
117 |
gatttctgttttcaaaattgatctcactctgttgtatacttcttcctatgaaaatgcaacaaatacttttcttgaaa |
193 |
Q |
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| T |
17446026 |
gatttctgttt-caaaattgatctcactctgccgcatacttcttcctatgaaaatgcaacaaatacttgtcttgaaa |
17445951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 17446207 - 17446159
Alignment:
| Q |
1 |
atgagaagtaacaaatgttaagaattaatgaaacaaacaattcagacct |
49 |
Q |
| |
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|||||||||||||||| | |||| ||||| |||||||||||||| |||| |
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| T |
17446207 |
atgagaagtaacaaatatcaagagttaatcaaacaaacaattcaaacct |
17446159 |
T |
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