View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3384_low_3 (Length: 314)
Name: NF3384_low_3
Description: NF3384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3384_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 7431316 - 7431051
Alignment:
| Q |
18 |
caccttggttacctgattaaactgctacatgaatgtttaggccaccttgttttctattacttgtaatgagaatatgtggtctgattttgttgtaaaagca |
117 |
Q |
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| T |
7431316 |
caccttggttacctgattaaactgctacatgaatgtttaggccaccttgttttctgttacttgtaatgagaatatggggtctgattttgttgtaaaagca |
7431217 |
T |
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| Q |
118 |
ttccgattacgtaggctgcaatgtttgactgcattaatttgtttttataggttaattgtatataattaattagcattgttggcagagaattctgattaca |
217 |
Q |
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| T |
7431216 |
ttctgattacgtaggctgcaatttttgactgcattaatttgtttttataggctaactgtatagaattaattagcatagctggcagagaattctgattaca |
7431117 |
T |
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| Q |
218 |
tggaattaatttgttttctacatcagtacactctttaggtagagaaactacatatactgctgcaat |
283 |
Q |
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| T |
7431116 |
tggaattaatttgttttctgcatcagtacactatttaggcagagaaactacatatgctcctgcaat |
7431051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 77 - 283
Target Start/End: Original strand, 14605830 - 14606036
Alignment:
| Q |
77 |
cttgtaatgagaatatgtggtctgattttgttgtaaaagcattccgattacgtaggctgcaatgtttgactgcattaatttgtttttataggttaattgt |
176 |
Q |
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| T |
14605830 |
cttgtaatgagaacatgtggtctgattttgttgtaaaagcattccgattatgtaggctgcaatctttgactgcattaatttgtttttataggctaattgt |
14605929 |
T |
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| Q |
177 |
atataattaattagcattgttggcagagaattctgattacatggaattaatttgttttctacatcagtacactctttaggtagagaaactacatatactg |
276 |
Q |
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| T |
14605930 |
atagaattaattagcatagttggcagagaattctgattacatggaattaatttgttttctgcatcagtacactctttgggcagagaaactacatatgctc |
14606029 |
T |
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| Q |
277 |
ctgcaat |
283 |
Q |
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| T |
14606030 |
ctgcaat |
14606036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 81 - 203
Target Start/End: Original strand, 26340341 - 26340464
Alignment:
| Q |
81 |
taatgagaatatgtggtctgattttgttg-taaaagcattccgattacgtaggctgcaatgtttgactgcattaatttgtttttataggttaattgtata |
179 |
Q |
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| T |
26340341 |
taatgagagtatttggtcttattttgatgattagagcattgtgattacataggctaaaatctttgactacattaatttgttttaataggctaattgtata |
26340440 |
T |
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| Q |
180 |
taattaattagcattgttggcaga |
203 |
Q |
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| T |
26340441 |
gaattaattagcatagctggcaga |
26340464 |
T |
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