View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3386_high_1 (Length: 1236)
Name: NF3386_high_1
Description: NF3386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3386_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 973; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 973; E-Value: 0
Query Start/End: Original strand, 11 - 1137
Target Start/End: Original strand, 6353356 - 6354491
Alignment:
| Q |
11 |
ggagcagagacggtaagctgttttgacagtataagctccacccaccgttgacttccagattcgagaatcagttcttgatcgagcaaatagtggaatggac |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6353356 |
ggagcagagacggtaagctgttttgacagtataagctccacccaccgttgacttccagattcgagaatcagttcttgatcgagcaaatagtggaatggac |
6353455 |
T |
|
| Q |
111 |
agaattgtggttacatcagtagcatcaaacagattttgtatgacaggaatgttccaagaattcagacccgggtttagcaaagcatttaccataagatctt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6353456 |
agaattgtggttacatcagtagcatcaaacagattttgtatgacaggaatgttccaagaattcagacccgggtttagcaaagcatttaccataagatctt |
6353555 |
T |
|
| Q |
211 |
tgtagtgaagaggtggcgaggtggagggtttgtgacctcgccaccattcaacattgtttcagagagaccaactccagtgcagatttattaggaaaaaaga |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
6353556 |
tgtagtgaagaggtggcgaggtggagggtttgtgacctcgccaccattcaacattgtttcagagagaccaactcccgtgcagatttattaggaaaaaaga |
6353655 |
T |
|
| Q |
311 |
tttgatgctcttttctttctagtttatgttaattataactgtaatttccttcatgcccttttgttaacctacacctcttattatnnnnnnnnn--ctaca |
408 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6353656 |
tttgatgctcttttctttctggtttatgttaattataactgtaatttccttcatgcccttttgttaacctacacctcttattataaaaaaaaaaactaca |
6353755 |
T |
|
| Q |
409 |
aacactttttaaatgaaactcacaaaatactttcgtacaagggacagttatgttagaggtcgatagaaccaacgagggaaatatatcatttcaagggatc |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6353756 |
aacactttttaaatgaaactcacaaaatactttcgtacaaggaacagttatgttagaggtcgatagaaccaacgagggaaatatatcatttcaagggatc |
6353855 |
T |
|
| Q |
509 |
tatttttcgtgagtataatcatcaatggagagtcatgcaagtagcattctggtgttgtctagttgaaacatgccttgaaatctcatgttggatatatatg |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6353856 |
tatttttcgtgagtataatcatcaatggagagtcatgcaagtagcattctggtgttgtctagttgaaacatgccttgaaatctcatgttggatatatatg |
6353955 |
T |
|
| Q |
609 |
aagaaaaataactcttttcggctactgttgtatgtgctggacacagggactgttgtcctaggtgcaacaataacgcgtttcaggaaggtcctgcttctgg |
708 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6353956 |
aagaaaaataactcttttcggctactgttgtatgtgctggacacagggactgttgtcctaggtgcaacaataacacgtttcaggaaggtcctgcttctgg |
6354055 |
T |
|
| Q |
709 |
tagctgtgtagaggtcagtagagtacaaactgcgttggccgcatgggctgtgcgaggcgcaaagtgcagtgcaagtgtctgnnnnnnnctttctttctga |
808 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
6354056 |
tagctgtgtagaggtcagtagagtacaaactgcgttggccgcatgggctgtgcgaggcgcaaagtgcagtgcaagtgtctgtttttttctttctttctga |
6354155 |
T |
|
| Q |
809 |
ggtgtataagaggccaagacnnnnnnnngtgtgtttaatcttgtcaaaccaaaggaggaaacttttagtaattttagaggctaacgttattgggttggaa |
908 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6354156 |
ggtgtataagaggccaagacttttttttgtgtgtttaatcttgtcaaatcaaaggaggaaacttttagtaattttagaggctaacgttattgggttggaa |
6354255 |
T |
|
| Q |
909 |
aacactttgtaaacacctt-ggtagtgagatttcattagaggaaggat------attgacgagtttggtagcaaaaatggtggaaatcggctctttgaag |
1001 |
Q |
| |
|
|||||||||||||||| || ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6354256 |
aacactttgtaaacactttgggtagtgagatctcattagaggaaggatcaaaggattgacgagtttggtagcaaaaatggtggaaatcggctctttgaag |
6354355 |
T |
|
| Q |
1002 |
aggtgtttcatgaataactccatcgatcttttcctattttacgatttgcggatgatacnnnnnnnatttgtgaagggaattgagagaatttatggtgtct |
1101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
6354356 |
aggtgtttcatgaataactccatcgatcttttcctattttacgatttgcggatgatactttttttatttgtgaagggaattgagagaatttatggtgtct |
6354455 |
T |
|
| Q |
1102 |
taaatctgttactagaatctttgcattgatttcggg |
1137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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| T |
6354456 |
taaatctgttactagaatctttgcattgatttcggg |
6354491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 1e-41; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 101 - 244
Target Start/End: Original strand, 23601120 - 23601262
Alignment:
| Q |
101 |
tggaatggacagaattgtggttacatcagtagcatcaaacagattttgtatgacaggaatgttccaagaattcagacccgggtttagcaaagcatttacc |
200 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
23601120 |
tggaatggacagaatttctgttacatcaatagcatcaaacaaattttgtatgacagaaatgttccaagaattcagactcgggtttagcaaagca-ttacc |
23601218 |
T |
|
| Q |
201 |
ataagatctttgtagtgaagaggtggcgaggtggagggtttgtg |
244 |
Q |
| |
|
|||||| ||| ||||||||||||||| |||| ||||||||||| |
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| T |
23601219 |
gtaagatatttatagtgaagaggtggcaaggttgagggtttgtg |
23601262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 898 - 945
Target Start/End: Complemental strand, 37782124 - 37782077
Alignment:
| Q |
898 |
ttgggttggaaaacactttgtaaacaccttgg-tagtgagatttcatta |
945 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||||||||| |
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|
| T |
37782124 |
ttgggttggaaaaca-tttgtaaacaccttgggtagtgagatttcatta |
37782077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 23601072 - 23601121
Alignment:
| Q |
11 |
ggagcagagacggtaagctgttttgacagtataagctccacccaccgttg |
60 |
Q |
| |
|
||||||||||| |||| |||||||||||||||| ||||| ||||||||| |
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| T |
23601072 |
ggagcagagacaataagttgttttgacagtataaactccatccaccgttg |
23601121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 898 - 955
Target Start/End: Complemental strand, 3278261 - 3278204
Alignment:
| Q |
898 |
ttgggttggaaaacactttgtaaacaccttgg-tagtgagatttcattagaggaaggat |
955 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||||||||| |||| |||| |
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|
| T |
3278261 |
ttgggttggaaaaca-tttgtaaacaccttggatagtgagatttcattataggacggat |
3278204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 914 - 956
Target Start/End: Original strand, 31513184 - 31513227
Alignment:
| Q |
914 |
tttgtaaacaccttgg-tagtgagatttcattagaggaaggata |
956 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
31513184 |
tttgtaaacaccttgaatagtgagatttcattagaggaaggata |
31513227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 918 - 956
Target Start/End: Complemental strand, 30900108 - 30900069
Alignment:
| Q |
918 |
taaacaccttgg-tagtgagatttcattagaggaaggata |
956 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
30900108 |
taaacaccttgggtagtgagatttcattagaggaaggata |
30900069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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