View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3386_high_12 (Length: 413)

Name: NF3386_high_12
Description: NF3386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3386_high_12
NF3386_high_12
[»] chr3 (1 HSPs)
chr3 (2-395)||(12370958-12371354)
[»] chr8 (2 HSPs)
chr8 (5-318)||(20526348-20526664)
chr8 (68-344)||(10600716-10600998)
[»] chr5 (4 HSPs)
chr5 (64-212)||(26683233-26683381)
chr5 (68-230)||(29755189-29755351)
chr5 (204-371)||(26682678-26682840)
chr5 (68-179)||(5335445-5335556)
[»] chr2 (4 HSPs)
chr2 (68-231)||(10973784-10973947)
chr2 (4-362)||(2973594-2973951)
chr2 (67-353)||(17826356-17826652)
chr2 (68-305)||(14230684-14230927)
[»] chr4 (4 HSPs)
chr4 (68-362)||(12354829-12355128)
chr4 (68-203)||(27066970-27067105)
chr4 (68-203)||(27087683-27087818)
chr4 (68-137)||(54027938-54028007)
[»] chr1 (3 HSPs)
chr1 (79-330)||(6949578-6949835)
chr1 (68-330)||(47747200-47747468)
chr1 (68-200)||(47726030-47726162)
[»] scaffold1964 (2 HSPs)
scaffold1964 (4-330)||(749-1077)
scaffold1964 (316-362)||(696-742)
[»] chr6 (1 HSPs)
chr6 (68-230)||(30141174-30141336)
[»] scaffold0643 (1 HSPs)
scaffold0643 (68-150)||(869-951)
[»] chr7 (1 HSPs)
chr7 (70-115)||(27810332-27810377)


Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 2 - 395
Target Start/End: Original strand, 12370958 - 12371354
Alignment:
Q  2 cagtgataatgttaccaacttcagttatgtcttcccgaaccgagtaaagtgcannnnnnnnngtaattttagagtcaacttcaaaatccatattatcaag 101  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||| |||         ||||||||||||||||||||||||||||||||||||||    
T  12370958 cagtgataatgttaccgacttcagttatgtcttcccgacccgagtaaagagcatttttt---gtaattttagagtcaacttcaaaatccatattatcaag 12371054  T
Q  102 gtgcatatcactcacctattggagagcatggtaaagacccaatgcttcctctatgttaacaggatatacaccattaaaactgattgttctagccaaaaca 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12371055 gtgcatatcactcacctattggagagcatggtaaagacccaatgcttcctctatgtcaacaggatatacaccattaaaactgattgttctagccaaaaca 12371154  T
Q  202 aagactccaccttcatcacggatgcaa------atgccggttctgttactgtgactggagaacgccgcctcaatgttgcacttcatgtggccatgctcag 295  Q
    ||||| |||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |    
T  12371155 aagaccccaccttcatcacggatgcaaatgccgatgccggttctgttactgtgactggagaacgccgcctcaatgttgcacctcatgcggccatgctcgg 12371254  T
Q  296 gaggatgccactgcagctgggcagcagctggaacatcaattgcagcagcgctaacagcttctggttgtaaatcataaggaccagtagctggtgtaatgta 395  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12371255 gaggctgccaccgcagctgggcagcagctggaacatcaattgcagcagcgctaacagctgctggttgtaaatcataaggaccagtagctggtgtaatgta 12371354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 153; Significance: 6e-81; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 5 - 318
Target Start/End: Original strand, 20526348 - 20526664
Alignment:
Q  5 tgataatgttaccaacttcagttatgtcttcccgaaccgagtaaagtgcannnnnnnnngtaattttagagtcaacttcaaaatccatattatcaaggtg 104  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||  |||         || ||||||||||  ||||||||||||||||||||||||||    
T  20526348 tgataatgttaccgacttcagttatgtcttcccgacccgagtaaatagcatctttt---gtgattttagagtagacttcaaaatccatattatcaaggtg 20526444  T
Q  105 catatcactcacctattggagagcatggtaaagacccaatgcttcctctatgttaacaggatatacaccattaaaactgattgttctagccaaaacaaag 204  Q
    ||||||| ||||| ||||||||||| ||| |||||||||||||||| | || | ||| ||||| |||||||||||| ||| |||||||||||||||||||    
T  20526445 catatcattcacccattggagagcaaggtgaagacccaatgcttccccaatatcaaccggatacacaccattaaaattgaatgttctagccaaaacaaag 20526544  T
Q  205 actccaccttcatcacggatgcaaatgcc------ggttctgttactgtgactggagaacgccgcctcaatgttgcacttcatgtggccatgctcaggag 298  Q
    ||||||||||||||| |||||||||||||      |||| |||||| |||||| |||||||||||  |||||||||||||||||||||||||||||| ||    
T  20526545 actccaccttcatcatggatgcaaatgccgatgttggttttgttacggtgactagagaacgccgcaccaatgttgcacttcatgtggccatgctcagaag 20526644  T
Q  299 gatgccactgcagctgggca 318  Q
    | |||||| |||||||||||    
T  20526645 gctgccaccgcagctgggca 20526664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 68 - 344
Target Start/End: Complemental strand, 10600998 - 10600716
Alignment:
Q  68 ttttagagtcaacttcaaaatccatattatcaaggtgcatatcactcacctattggagagcatggtaaagacccaatgcttcctctatgttaacaggata 167  Q
    |||| ||||||||||||||||| |||||||| | ||||||||||||| || |||| || ||||||||||| || || |||||  |||||| ||| |||||    
T  10600998 ttttggagtcaacttcaaaatcaatattatctaagtgcatatcactcgcccattgaagcgcatggtaaaggcctaaagcttcacctatgtcaaccggata 10600899  T
Q  168 tacaccattaaaactgattgttctagccaaaacaaagactccaccttcatcacggatgcaaat------gccggttctgttactgtgactggagaacgcc 261  Q
    ||||||| ||||  ||| ||||||||||||||||||||||||| |||| ||||| ||||||||      ||| ||| || ||   |||||||||||||||    
T  10600898 tacaccaataaaggtgactgttctagccaaaacaaagactccatcttcgtcacgaatgcaaatgcctacgcctgttttgatatgttgactggagaacgcc 10600799  T
Q  262 gcctcaatgttgcacttcatgtggccatgctcaggaggatgccactgcagctgggcagcagctggaacatcaattgcagcagc 344  Q
    || |||| |||||| |||||  |||||||||| ||||| |||||| || ||||||||||||||||||||||| |||| |||||    
T  10600798 gcatcaacgttgcatttcatacggccatgctcgggaggctgccaccgcggctgggcagcagctggaacatcacttgctgcagc 10600716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 2e-59; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 64 - 212
Target Start/End: Complemental strand, 26683381 - 26683233
Alignment:
Q  64 gtaattttagagtcaacttcaaaatccatattatcaaggtgcatatcactcacctattggagagcatggtaaagacccaatgcttcctctatgttaacag 163  Q
    ||||||| ||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||| |||||| |||||    
T  26683381 gtaatttaagagtaaacttcaaaattcatattatcaaggtgcatatcactcacccattggagagcatggtaaagaccagatgcttcccctatgtcaacag 26683282  T
Q  164 gatatacaccattaaaactgattgttctagccaaaacaaagactccacc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26683281 gatatacaccattaaaactgattgttctagccaaaacaaagactccacc 26683233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 68 - 230
Target Start/End: Original strand, 29755189 - 29755351
Alignment:
Q  68 ttttagagtcaacttcaaaatccatattatcaaggtgcatatcactcacctattggagagcatggtaaagacccaatgcttcctctatgttaacaggata 167  Q
    |||||||||| ||||||||||| || ||||||| ||||||||| |||||| |||| || |||||||||||  |||| |||||| | |||| ||| |||||    
T  29755189 ttttagagtcgacttcaaaatcaatgttatcaaagtgcatatcgctcacccattgaagcgcatggtaaaggtccaaagcttccccaatgtcaaccggata 29755288  T
Q  168 tacaccattaaaactgattgttctagccaaaacaaagactccaccttcatcacggatgcaaat 230  Q
     |||||| |||| || |||||||||||||| ||||| ||||| ||||| ||||||||||||||    
T  29755289 gacaccaataaagctaattgttctagccaacacaaaaactcccccttcgtcacggatgcaaat 29755351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 204 - 371
Target Start/End: Complemental strand, 26682840 - 26682678
Alignment:
Q  204 gactccaccttcatcacggatgcaaatgccg------gttctgttactgtgactggagaacgccgcctcaatgttgcacttcatgtggccatgctcagga 297  Q
    ||||||||||||||||||| |||||||||||      ||||| |||| |||||||||||||||| | |  ||||||||||| ||| ||||||||||||||    
T  26682840 gactccaccttcatcacggctgcaaatgccgatgtcggttctcttacggtgactggagaacgccacgttgatgttgcactttatgcggccatgctcagga 26682741  T
Q  298 ggatgccactgcagctgggcagcagctggaacatcaattgcagcagcgctaacagcttctggttgtaaatcata 371  Q
    || |||||| | ||||||           |||||||||||||| ||||||||||||| ||||||||||||||||    
T  26682740 ggctgccaccgtagctgg-----------aacatcaattgcagtagcgctaacagctgctggttgtaaatcata 26682678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 68 - 179
Target Start/End: Original strand, 5335445 - 5335556
Alignment:
Q  68 ttttagagtcaacttcaaaatccatattatcaaggtgcatatcactcacctattggagagcatggtaaagacccaatgcttcctctatgttaacaggata 167  Q
    |||||||||| ||||||||||  || |||||||| |||||||| ||| || |||| || |||||||||||  |||| |||||| | |||| ||| |||||    
T  5335445 ttttagagtcgacttcaaaattaatgttatcaagatgcatatcgctcgcccattgaagcgcatggtaaaggtccaaagcttccccaatgtcaaccggata 5335544  T
Q  168 tacaccattaaa 179  Q
     |||||| ||||    
T  5335545 gacaccaataaa 5335556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 68 - 231
Target Start/End: Original strand, 10973784 - 10973947
Alignment:
Q  68 ttttagagtcaacttcaaaatccatattatcaaggtgcatatcactcacctattggagagcatggtaaagacccaatgcttcctctatgttaacaggata 167  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||  || |||| || ||||||||||||||||| |||||||| |||| ||  |||||    
T  10973784 ttttagagtcgacttcaaaatcaatattatcaaggtgcatatcactagcccattgaagcgcatggtaaagacccaaagcttcctcaatgtcaatcggata 10973883  T
Q  168 tacaccattaaaactgattgttctagccaaaacaaagactccaccttcatcacggatgcaaatg 231  Q
     |||||| ||||||| |||||||| |||||||||||||| |||||||| |||||||||||||||    
T  10973884 aacaccaataaaacttattgttctggccaaaacaaagaccccaccttcttcacggatgcaaatg 10973947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 4 - 362
Target Start/End: Original strand, 2973594 - 2973951
Alignment:
Q  4 gtgataatgttaccaacttcagttatgtcttcccgaaccgagtaaagtgcannnnnnnnngtaattttagagtcaacttcaaaatccatattatcaaggt 103  Q
    ||||| ||||| |||| ||||||||||||||||||| |||||||||| |||         ||  |||| ||||| ||||||||||| |||||||| | ||    
T  2973594 gtgatgatgttgccaaattcagttatgtcttcccgacccgagtaaagagcatctttt---gtggttttggagtcgacttcaaaatcaatattatctaagt 2973690  T
Q  104 gcatatcactcacctattggagagcatggtaaagacccaatgcttcctctatgttaacaggatatacaccattaaaactgattgttctagccaaaacaaa 203  Q
     |||||||||| || |||| || ||||||||||  || || |||||  |||||| ||| ||||||||||||   ||  ||| ||||||||||||||||||    
T  2973691 ccatatcactcgcc-attgaagcgcatggtaaatgcctaaagcttcacctatgtcaaccggatatacacca---aaggtgactgttctagccaaaacaaa 2973786  T
Q  204 gactccaccttcatcacggatgcaaat------gccggttctgttactgtgactggagaacgccgcctcaatgttgcacttcatgtggccatgctcagga 297  Q
    ||||||| |||| ||||||||||||||      ||| ||| |||| |  ||||||||||||||||| |||| |||||| |||||  |||||||||| |||    
T  2973787 gactccatcttcgtcacggatgcaaatgcctacgcctgttttgttgcgttgactggagaacgccgcatcaacgttgcaattcatacggccatgctcggga 2973886  T
Q  298 ggatgccactgcagctgggcagcagctggaacatcaattgcagcagcgctaacagcttctggttg 362  Q
    || |||||| || ||||| |||||||||||||| || | ||||||||   ||||||| |||||||    
T  2973887 ggctgccaccgcggctggacagcagctggaacagcactagcagcagctggaacagctgctggttg 2973951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 67 - 353
Target Start/End: Complemental strand, 17826652 - 17826356
Alignment:
Q  67 attttagagtcaacttcaaaatccatattatcaaggtgcatatcactcacctattggagagcatggtaaagacccaatgcttcctctatgttaacaggat 166  Q
    ||||||||||| ||||||||||| |||||||||||||||||||| ||   | |||| || ||||||||||| | ||| |||||| | |||| ||| ||||    
T  17826652 attttagagtcgacttcaaaatcaatattatcaaggtgcatatcgcttgtccattgaagcgcatggtaaaggctcaaagcttccccaatgtcaaccggat 17826553  T
Q  167 atacaccat----taaaactgattgttctagccaaaacaaagactccaccttcatcacggatgcaaat------gccggttctgttactgtgactggaga 256  Q
    | ||||||     |||| || | |||||||||||| ||||| |||||  |||| || |||||||||||      ||| ||| |||||| |||||| ||||    
T  17826552 agacaccaagaaataaagctaactgttctagccaacacaaatactccctcttcgtcgcggatgcaaataccaatgcccgttttgttacggtgactagaga 17826453  T
Q  257 acgccgcctcaatgttgcacttcatgtggccatgctcaggaggatgccactgcagctgggcagcagctggaacatcaattgcagcagcgctaacagc 353  Q
    || |||| |||| |||| |||| ||| |||||||||||||||| | |||| || ||||||||||||||||||||||  |||||  ||||||| ||||    
T  17826452 acaccgcatcaacgttgtactttatgcggccatgctcaggaggcttccaccgctgctgggcagcagctggaacatcgcttgcaagagcgctagcagc 17826356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 68 - 305
Target Start/End: Complemental strand, 14230927 - 14230684
Alignment:
Q  68 ttttagagtcaacttcaaaatccatattatcaaggtgcatatcactcacctattggagagcatggtaaagacccaatgcttcctctatgttaacaggata 167  Q
    |||||||||| ||||||| ||| ||  || ||||||||||||| |||  | |||| || ||||||||||| ||||| |||||| | |||| ||| |||||    
T  14230927 ttttagagtcgacttcaatatcaatgataacaaggtgcatatcgctcgtccattgaagcgcatggtaaaggcccaaagcttccccaatgtcaaccggata 14230828  T
Q  168 tacaccattaaaactgattgttctagccaaaacaaagactccaccttcatcacggatgca------aatgccggttctgttactgtgactggagaacgcc 261  Q
     |||||| |||| || |||||||||||||| ||||| ||||| ||||| |||||||||||      ||| || ||| |||||| |||||| || ||||||    
T  14230827 gacaccaataaagctaattgttctagccaacacaaaaactcccccttcgtcacggatgcaaataccaattcccgttttgttacggtgactagaaaacgcc 14230728  T
Q  262 gcctcaatgttgcacttcatgtggccatgctcaggaggatgcca 305  Q
    || |||| ||| ||||||||  | |||||||| ||||| |||||    
T  14230727 gcatcaacgttacacttcatacgaccatgctcgggaggctgcca 14230684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 6e-41; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 68 - 362
Target Start/End: Complemental strand, 12355128 - 12354829
Alignment:
Q  68 ttttagagtcaacttcaaaatccatattatcaaggtgcatatcactcacctattggagagcatggtaaagacccaatgcttcctctatgttaacaggata 167  Q
    |||||||||| ||||||||||| || ||||||||||||||||| ||| || |||| |  ||||||||||| ||||| |||||| | |||| ||| |||||    
T  12355128 ttttagagtcgacttcaaaatcaatgttatcaaggtgcatatcgctcgcccattgaatcgcatggtaaaggcccaaagcttccccaatgtcaaccggata 12355029  T
Q  168 tacaccattaaaactgattgttctagccaaaacaaagactccaccttcatcacggatgca------aatgccggttctgttactgtgactggagaacgcc 261  Q
     |||||| |||| || |||||||||||||| ||||| ||||| ||||| |||||||||||      ||| || ||| | |||| |||||| || ||||||    
T  12355028 gacaccaataaagctaattgttctagccaacacaaaaactcccccttcgtcacggatgcaaataccaattcccgttttattacggtgactagaaaacgcc 12354929  T
Q  262 gcctcaatgttgcacttcatgtggccatgctcaggaggatgccactgcagctgggcagcagctggaacatcaattgcagcagcgctaacagcttctggtt 361  Q
    || |||| ||| ||||||||  |||||||||| ||||| |||||  || ||||| ||||||||||||||||| | |||||| | ||| ||||| ||||||    
T  12354928 gcgtcaacgttacacttcatacggccatgctc-ggaggctgccatcgctgctggacagcagctggaacatcactggcagcaacactagcagctgctggtt 12354830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 68 - 203
Target Start/End: Original strand, 27066970 - 27067105
Alignment:
Q  68 ttttagagtcaacttcaaaatccatattatcaaggtgcatatcactcacctattggagagcatggtaaagacccaatgcttcctctatgttaacaggata 167  Q
    |||||||||| ||||||||||| || ||||||||||||||||  ||| || |||| || ||||||||||| | ||| |||||| | |||| ||| |||||    
T  27066970 ttttagagtcgacttcaaaatcaatgttatcaaggtgcatattgctcgcccattgaagcgcatggtaaaggctcaaagcttccccaatgtcaactggata 27067069  T
Q  168 tacaccattaaaactgattgttctagccaaaacaaa 203  Q
     |||||| |||| || ||||||||| |||| |||||    
T  27067070 gacaccaataaagctaattgttctatccaacacaaa 27067105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 68 - 203
Target Start/End: Original strand, 27087683 - 27087818
Alignment:
Q  68 ttttagagtcaacttcaaaatccatattatcaaggtgcatatcactcacctattggagagcatggtaaagacccaatgcttcctctatgttaacaggata 167  Q
    |||||||||| ||||||||||| || ||||||||||||||||  ||| || |||| || ||||||||||| | ||| |||||| | |||| ||| |||||    
T  27087683 ttttagagtcgacttcaaaatcaatgttatcaaggtgcatattgctcgcccattgaagcgcatggtaaaggctcaaagcttccccaatgtcaactggata 27087782  T
Q  168 tacaccattaaaactgattgttctagccaaaacaaa 203  Q
     |||||| |||| || ||||||||| |||| |||||    
T  27087783 gacaccaataaagctaattgttctatccaacacaaa 27087818  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 54027938 - 54028007
Alignment:
Q  68 ttttagagtcaacttcaaaatccatattatcaaggtgcatatcactcacctattggagagcatggtaaag 137  Q
    ||||||||||||| ||| |||| |||||||||||||||||||| ||| || |||| || |||||||||||    
T  54027938 ttttagagtcaacctcacaatcaatattatcaaggtgcatatcgctcgcccattgaagcgcatggtaaag 54028007  T

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Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 79 - 330
Target Start/End: Complemental strand, 6949835 - 6949578
Alignment:
Q  79 acttcaaaatccatattatcaaggtgcatatcactcacctattggagagcatggtaaagacccaatgcttcctctatgttaacaggatatacaccattaa 178  Q
    ||||||||||| |||||||| | ||||||||||||| || |||| || ||||||||||| || ||  ||||  || ||| |||||||||||||||| |||    
T  6949835 acttcaaaatcaatattatctaagtgcatatcactcgcccattgaagcgcatggtaaaggcctaaaacttcacctttgtcaacaggatatacaccaataa 6949736  T
Q  179 aactgattgttctagccaaaacaaagactccaccttcatcacggatgcaaat------gccggttctgttactgtgactggagaacgccgcctcaatgtt 272  Q
    |  ||||||||||||||||||||||||||||| |||| ||||||||||||||      ||| ||| |||| |  |||||||||||| |||| |||| |||    
T  6949735 aggtgattgttctagccaaaacaaagactccatcttcgtcacggatgcaaatgcctacgcctgttttgttgcgttgactggagaactccgcatcaacgtt 6949636  T
Q  273 gcacttcatgtggccatgctcaggaggatgccactgcagctgggcagcagctggaaca 330  Q
    ||  |||||   ||||||||| ||||| |||||| || ||||| ||||||||||||||    
T  6949635 gcgtttcatactgccatgctcgggaggctgccaccgcggctggacagcagctggaaca 6949578  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 68 - 330
Target Start/End: Complemental strand, 47747468 - 47747200
Alignment:
Q  68 ttttagagtcaacttcaaaatccatattatcaaggtgcatatcactcacctattggagagcatggtaaagacccaatgcttcctctatgttaacaggata 167  Q
    |||| ||||| ||||||||||| | |||||| | ||||||||||||| || |||| |  ||||||||||| || || |||||  |||||| ||  || ||    
T  47747468 ttttggagtcgacttcaaaatcaaaattatctaagtgcatatcactcgcccattgaatcgcatggtaaaggcctaaagcttcacctatgtcaatcgggta 47747369  T
Q  168 tacaccattaaaactgattgttctagccaaaacaaagactccaccttcatcacggatgcaaat------gccggttctgttactgtgactggagaacgcc 261  Q
    |||||||  |||  ||| ||||||||||||||||||||||||| |||  ||||| ||||||||      |||  || ||||||  |||||||| ||||||    
T  47747368 tacaccaacaaaggtgactgttctagccaaaacaaagactccatcttagtcacgaatgcaaatgcctacgcctcttttgttacgttgactggaaaacgcc 47747269  T
Q  262 gcctcaatgttgcacttcatgtggccatgctcaggaggatgccactgcagctgggcagcagctggaaca 330  Q
     | |||| |||||| ||||| ||||||||||| ||||| |||||| || ||||| |||||| |||||||    
T  47747268 acatcaacgttgcatttcatatggccatgctcgggaggctgccaccgcggctggacagcagttggaaca 47747200  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 200
Target Start/End: Complemental strand, 47726162 - 47726030
Alignment:
Q  68 ttttagagtcaacttcaaaatccatattatcaaggtgcatatcactcacctattggagagcatggtaaagacccaatgcttcctctatgttaacaggata 167  Q
    |||| ||||| ||||||||||| | |||||| | ||||||||||||| || |||| |  ||||||||||| || || |||||  |||||| ||  || ||    
T  47726162 ttttggagtcgacttcaaaatcaaaattatctaagtgcatatcactcgcccattgaatcgcatggtaaaggcctaaagcttcacctatgtcaatcgggta 47726063  T
Q  168 tacaccattaaaactgattgttctagccaaaac 200  Q
    |||||||  |||  ||| |||||||||||||||    
T  47726062 tacaccaacaaaggtgactgttctagccaaaac 47726030  T

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Target: scaffold1964 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: scaffold1964
Description:

Target: scaffold1964; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 4 - 330
Target Start/End: Complemental strand, 1077 - 749
Alignment:
Q  4 gtgataatgttaccaacttcagttatgtcttcccgaaccgagtaaagtgcannnnnnnnngtaattttagagtcaacttcaaaatccatattatcaaggt 103  Q
    ||||||||||| |||| ||||||||||||||||||| |||||||||| ||          ||  |||| ||||| ||||||||||| |||||||| | ||    
T  1077 gtgataatgttgccaaattcagttatgtcttcccgacccgagtaaagagc---gtcttttgtggttttggagtcgacttcaaaatcaatattatctaagt 981  T
Q  104 gcatatcactcacctattggagagcatggtaaagacccaatgcttcctctatgttaacaggatatacaccattaaaactgattgttctagccaaaacaaa 203  Q
    ||||||||||| || |||| || ||||||||||| |  || |||||  |||||| ||| ||||||||| || | ||  ||| ||||||||||||||||||    
T  980 gcatatcactcgccgattgaagcgcatggtaaaggcttaaagcttcacctatgtcaaccggatatacatcaat-aaggtgactgttctagccaaaacaaa 882  T
Q  204 gactccaccttcatcacggatgcaaat------gccggttctgttactgtgactggagaacgccgcctcaatgttgcacttcatgtggccatgctcagga 297  Q
    ||||||| |||| ||| | ||| ||||      ||| ||| ||||||  ||||||||||||||||| |||| |||||| |||||  |||||| ||  |||    
T  881 gactccatcttcgtcaagaatgaaaatgccaacgcctgttttgttaccttgactggagaacgccgcatcaacgttgcatttcatacggccatccttggga 782  T
Q  298 ggatgccactgcagctgggcagcagctggaaca 330  Q
    || |||||| || ||||| ||||||||||||||    
T  781 ggctgccaccgcggctggacagcagctggaaca 749  T

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Target: scaffold1964; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 362
Target Start/End: Complemental strand, 742 - 696
Alignment:
Q  316 gcagcagctggaacatcaattgcagcagcgctaacagcttctggttg 362  Q
    |||||||||||||||||| | ||||||||||||||| || |||||||    
T  742 gcagcagctggaacatcactagcagcagcgctaacaactgctggttg 696  T

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Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 68 - 230
Target Start/End: Original strand, 30141174 - 30141336
Alignment:
Q  68 ttttagagtcaacttcaaaatccatattatcaaggtgcatatcactcacctattggagagcatggtaaagacccaatgcttcctctatgttaacaggata 167  Q
    |||||||||| |||| |||||| || ||||||||||||||||| ||| || |||| || ||||||||||| ||||| |||||| | |||| ||| |||||    
T  30141174 ttttagagtcgactttaaaatcaatgttatcaaggtgcatatcgctcgcccattgaagcgcatggtaaaggcccaaagcttccccaatgtcaaccggata 30141273  T
Q  168 tacaccattaaaactgattgttctagccaaaacaaagactccaccttcatcacggatgcaaat 230  Q
     |||||| ||||||| |||||||||||||| || || ||||  ||||| ||||||||||||||    
T  30141274 gacaccaataaaactaattgttctagccaacacgaaaactctcccttcgtcacggatgcaaat 30141336  T

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Target: scaffold0643 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0643
Description:

Target: scaffold0643; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 68 - 150
Target Start/End: Complemental strand, 951 - 869
Alignment:
Q  68 ttttagagtcaacttcaaaatccatattatcaaggtgcatatcactcacctattggagagcatggtaaagacccaatgcttcc 150  Q
    |||||||||| ||||||||||| |||||||||||||||||||| ||| || |||| || ||||||||||| ||||| ||||||    
T  951 ttttagagtcgacttcaaaatcaatattatcaaggtgcatatcgctcgcccattgaagcgcatggtaaagtcccaaagcttcc 869  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 27810377 - 27810332
Alignment:
Q  70 ttagagtcaacttcaaaatccatattatcaaggtgcatatcactca 115  Q
    |||||||||||||||||||| ||||| ||||  |||||||||||||    
T  27810377 ttagagtcaacttcaaaatcaatattgtcaaactgcatatcactca 27810332  T

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