View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3386_high_15 (Length: 357)
Name: NF3386_high_15
Description: NF3386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3386_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 9e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 8 - 197
Target Start/End: Complemental strand, 39360261 - 39360072
Alignment:
| Q |
8 |
catcatcatcatcatccataatttatccaatttccttaaacttgggcggattcaacttacttgttatgtttttctcttttgctcttcttgactttgttaa |
107 |
Q |
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| T |
39360261 |
catcatcatcatcatccataatttatccaatttccttaaacttgggcagattcaacttacttgttatgttgttctcttttgctcttcttgactttgttaa |
39360162 |
T |
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| Q |
108 |
tgtgttttagtatgtctgtgttaatgtgcttatcgtggacaattttttcacaaatggatcagtaaatgttaactagaatttaactacctt |
197 |
Q |
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| T |
39360161 |
tgtgttttagtatgtctgtgttaatgtgcttatcgtggacaattttttcataaatggatcaggaatagttaactagaatttaactacctt |
39360072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 181 - 342
Target Start/End: Complemental strand, 39360056 - 39359895
Alignment:
| Q |
181 |
tagaatttaactaccttgtctgcaaaagataaagatttacacattggactatatggtgcctgctgtttagctggacaaacaggacaattcannnnnnnna |
280 |
Q |
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| T |
39360056 |
tagaatttaactaccttgtctgcaaaagataaagatttacacattggactatatggtgcctgctgtttagctggacaaacaggacaattcatttttttta |
39359957 |
T |
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| Q |
281 |
acgaaaacgggacgatacatattgcctgaaaatagagtttttaatttttaagtaatgatatt |
342 |
Q |
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| T |
39359956 |
acgaaaactggacgatacatattgcctgaaaatagagttttttatttttaagtaataatatt |
39359895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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