View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3386_high_22 (Length: 285)

Name: NF3386_high_22
Description: NF3386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3386_high_22
NF3386_high_22
[»] chr3 (2 HSPs)
chr3 (19-263)||(45399679-45399924)
chr3 (190-238)||(20114530-20114578)
[»] chr4 (3 HSPs)
chr4 (19-244)||(33500901-33501132)
chr4 (190-244)||(13552614-13552668)
chr4 (89-154)||(44546338-44546404)
[»] chr8 (3 HSPs)
chr8 (97-238)||(33330428-33330570)
chr8 (89-152)||(20877492-20877556)
chr8 (44-154)||(17936008-17936119)
[»] chr7 (3 HSPs)
chr7 (33-204)||(31663599-31663771)
chr7 (89-152)||(8752194-8752258)
chr7 (190-244)||(9686237-9686291)
[»] scaffold0007 (1 HSPs)
scaffold0007 (168-244)||(247841-247917)
[»] chr1 (1 HSPs)
chr1 (93-226)||(1797954-1798088)
[»] chr2 (3 HSPs)
chr2 (194-229)||(23764933-23764968)
chr2 (194-229)||(23794151-23794186)
chr2 (53-150)||(45468441-45468539)
[»] chr6 (1 HSPs)
chr6 (53-154)||(5675782-5675884)
[»] chr5 (1 HSPs)
chr5 (91-150)||(37268045-37268105)


Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 45399924 - 45399679
Alignment:
Q  19 ctggtactattgaggaacattttgttcaatttgttcatatggcaggtatgcctcgatcttcgtatttattttttaaggtaatttggttg-cttgtgtgtg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  45399924 ctggtactattgaggaacattttgttcaatttgttcatatggcaggtatgcctcgatcttcgtatttattttttaaggtaatttggctggcttgtgtgtg 45399825  T
Q  118 ggcaagttggaaagagagaaataactgaatcttcaaaggtgtgcaatctgatccttttgctctcggtgatatagtgaagctgaattcctttttatggttg 217  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45399824 ggcaatttggaaagagagaaataactgaatcttcaaaggtgtgcaatctgatccttttgctctcggtgatatagtgaagctgaattcctttttatggttg 45399725  T
Q  218 aaaacaaatcagccatcttttatttttctttaccacaattggtttc 263  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  45399724 aaaacaaatcagccatcttttatttttctttaccacgattggtttc 45399679  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 20114578 - 20114530
Alignment:
Q  190 agtgaagctgaattcctttttatggttgaaaacaaatcagccatctttt 238  Q
    ||||||| ||||||| ||| | |||||||||||||||||||||||||||    
T  20114578 agtgaagttgaattcgtttatgtggttgaaaacaaatcagccatctttt 20114530  T

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Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 33501132 - 33500901
Alignment:
Q  19 ctggtactattgaggaacattttgttcaatttgttcatatggcaggtatgcctcgatcttcgtatttattttttaaggtaatttgg-ttgcttgtgtgtg 117  Q
    |||||| |||||  ||||| |||| ||| ||| ||||| ||||||||||||||||||||||  |||||||||||||| |||||||| | |||||||||||    
T  33501132 ctggtattattggagaacaatttgatcagtttattcatttggcaggtatgcctcgatcttctcatttattttttaagttaatttggctggcttgtgtgtg 33501033  T
Q  118 ggcaagttggaaagagagaaataactgaatcttcaaaggtgtgcaatctgatccttttgctctcggtgatatagtgaagctgaattcctttttatggttg 217  Q
    |||||  ||||||||||||||||||   ||||| |||  || |   || |||||||||||||||| ||| ||| |||||  |||||||||||| ||| ||    
T  33501032 ggcaatatggaaagagagaaataaccacatcttaaaaaatgcggcctccgatccttttgctctcgttgaaatattgaagtcgaattcctttttgtggctg 33500933  T
Q  218 aaaac-----aaatcagccatcttttattttt 244  Q
    |||||     ||||||||||||||||||||||    
T  33500932 aaaacaaattaaatcagccatcttttattttt 33500901  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 13552614 - 13552668
Alignment:
Q  190 agtgaagctgaattcctttttatggttgaaaacaaatcagccatcttttattttt 244  Q
    ||||||| ||||||| ||| | ||||||||||||||||||||||| |||||||||    
T  13552614 agtgaagttgaattcgtttatgtggttgaaaacaaatcagccatcatttattttt 13552668  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 154
Target Start/End: Original strand, 44546338 - 44546404
Alignment:
Q  89 ttttaaggtaatttgg-ttgcttgtgtgtgggcaagttggaaagagagaaataactgaatcttcaaa 154  Q
    ||||||||| |||||| |||||||||| |||||||  || |||||||||||||| || |||||||||    
T  44546338 ttttaaggttatttggcttgcttgtgtatgggcaatatgaaaagagagaaataattgtatcttcaaa 44546404  T

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Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 97 - 238
Target Start/End: Original strand, 33330428 - 33330570
Alignment:
Q  97 taatttgg-ttgcttgtgtgtgggcaagttggaaagagagaaataactgaatcttcaaaggtgtgcaatctgatccttttgctctcggtgatatagtgaa 195  Q
    |||||||| |||||||||| |||| ||  |||||||| ||||||||||| || || |||  ||||  ||||||||| ||| ||||   ||| | ||||||    
T  33330428 taatttggcttgcttgtgtttgggtaatatggaaagaaagaaataactgcatattaaaaaatgtggcatctgatccgtttactctatctgacaaagtgaa 33330527  T
Q  196 gctgaattcctttttatggttgaaaacaaatcagccatctttt 238  Q
    | ||||||| ||||| |||||||||||||||||||||||||||    
T  33330528 gttgaattcatttttgtggttgaaaacaaatcagccatctttt 33330570  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 152
Target Start/End: Complemental strand, 20877556 - 20877492
Alignment:
Q  89 ttttaaggtaatttgg-ttgcttgtgtgtgggcaagttggaaagagagaaataactgaatcttca 152  Q
    |||||||||||||||| |||||||||| ||||||| |||||| |||||||| ||| || ||||||    
T  20877556 ttttaaggtaatttggcttgcttgtgtttgggcaatttggaaggagagaaacaaccgagtcttca 20877492  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 154
Target Start/End: Original strand, 17936008 - 17936119
Alignment:
Q  44 tcaatttgttcatatggcaggtatgcctcgatcttcgtatttattttttaaggtaatttgg-ttgcttgtgtgtgggcaagttggaaagagagaaataac 142  Q
    ||||||| ||||| |||| |||||||| |||  ||| ||||  | | ||||| | |||||| |||||||||| |||||||  |||||||||||||||||     
T  17936008 tcaatttattcatctggcgggtatgccacgaatttcatattcttatcttaagattatttggcttgcttgtgtatgggcaatatggaaagagagaaataat 17936107  T
Q  143 tgaatcttcaaa 154  Q
    || |||||||||    
T  17936108 tgtatcttcaaa 17936119  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 204
Target Start/End: Complemental strand, 31663771 - 31663599
Alignment:
Q  33 gaacattttgttcaatttgttcatatggcaggtatgcctcgatcttcgtatttattttttaaggtaatttgg-ttgcttgtgtgtgggcaagttggaaag 131  Q
    ||||||||| |||| |||  ||||||||||||||||||||||||||| |||  ||| || || ||||||||| ||||||||||||||| ||  |||||||    
T  31663771 gaacattttattcagtttactcatatggcaggtatgcctcgatcttcttatccattcttcaaagtaatttggcttgcttgtgtgtgggtaatctggaaag 31663672  T
Q  132 agagaaataactgaatcttcaaaggtgtgcaatctgatccttttgctctcggtgatatagtgaagctgaattc 204  Q
    |||| ||| || | || |||||    |||   ||||||||| ||||||||  ||||| ||| |||||||||||    
T  31663671 agaggaatgaccgtattttcaactacgtggcttctgatcctgttgctctcattgataaagttaagctgaattc 31663599  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 152
Target Start/End: Original strand, 8752194 - 8752258
Alignment:
Q  89 ttttaaggtaatttgg-ttgcttgtgtgtgggcaagttggaaagagagaaataactgaatcttca 152  Q
    |||||||||||||||| |||||||||| ||||||| ||||||||||||||| ||| || ||||||    
T  8752194 ttttaaggtaatttggcttgcttgtgtttgggcaatttggaaagagagaaacaaccgagtcttca 8752258  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 9686237 - 9686291
Alignment:
Q  190 agtgaagctgaattcctttttatggttgaaaacaaatcagccatcttttattttt 244  Q
    ||||||| ||||||| ||| | ||||||||||||||||||||||| |||||||||    
T  9686237 agtgaagttgaattcgtttatgtggttgaaaacaaatcagccatcatttattttt 9686291  T

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Target: scaffold0007 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 244
Target Start/End: Original strand, 247841 - 247917
Alignment:
Q  168 atccttttgctctcggtgatatagtgaagctgaattcctttttatggttgaaaacaaatcagccatcttttattttt 244  Q
    ||||||||||||| | ||||| ||||||| ||||||| ||| | ||| ||||||||||||| |||||||||||||||    
T  247841 atccttttgctcttgttgataaagtgaagttgaattcatttctctggctgaaaacaaatcaaccatcttttattttt 247917  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 226
Target Start/End: Complemental strand, 1798088 - 1797954
Alignment:
Q  93 aaggtaatttgg-ttgcttgtgtgtgggcaagttggaaagagagaaataactgaatcttcaaaggtgtgcaatctgatccttttgctctcggtgatatag 191  Q
    |||||||||||| ||||||||||||||| || ||||||||| || ||| ||||  | |||||   ||||   ||  ||||||||||||||  ||||| ||    
T  1798088 aaggtaatttggcttgcttgtgtgtgggtaatttggaaagaaaggaatgactgtgttttcaacaatgtggcttccaatccttttgctctcattgataaag 1797989  T
Q  192 tgaagctgaattcctttttatggttgaaaacaaat 226  Q
    | ||||||||||| ||| ||||||||||| |||||    
T  1797988 ttaagctgaattcgtttctatggttgaaatcaaat 1797954  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 229
Target Start/End: Complemental strand, 23764968 - 23764933
Alignment:
Q  194 aagctgaattcctttttatggttgaaaacaaatcag 229  Q
    ||||| ||||||||||||||||||||||||||||||    
T  23764968 aagcttaattcctttttatggttgaaaacaaatcag 23764933  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 229
Target Start/End: Complemental strand, 23794186 - 23794151
Alignment:
Q  194 aagctgaattcctttttatggttgaaaacaaatcag 229  Q
    ||||| ||||||||||||||||||||||||||||||    
T  23794186 aagcttaattcctttttatggttgaaaacaaatcag 23794151  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 150
Target Start/End: Complemental strand, 45468539 - 45468441
Alignment:
Q  53 tcatatggcaggtatgcctcgatcttcgtatttattttttaaggtaatttgg-ttgcttgtgtgtgggcaagttggaaagagagaaataactgaatctt 150  Q
    |||| |||| |||||||| ||| |||| ||||| | | ||||||| |||||| |||||||||| |||||||  ||||| ||||||||||| || |||||    
T  45468539 tcatttggcgggtatgccacgagcttcatatttttatcttaaggttatttggcttgcttgtgtatgggcaatatggaaggagagaaataattgtatctt 45468441  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 154
Target Start/End: Complemental strand, 5675884 - 5675782
Alignment:
Q  53 tcatatggcaggtatgcctcgatcttcgtatttattttttaaggtaatttgg-ttgcttgtgtgtgggcaagttggaaagagagaaataactgaatcttc 151  Q
    |||| |||| |||||||| ||| ||||  |||| | | ||||||| |||||| |||| ||||| |||||||  ||||| |||||||||||||| ||||||    
T  5675884 tcatttggcgggtatgccacgagcttctcatttttatcttaaggttatttggcttgcctgtgtatgggcaatatggaaggagagaaataactgtatcttc 5675785  T
Q  152 aaa 154  Q
    |||    
T  5675784 aaa 5675782  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 150
Target Start/End: Original strand, 37268045 - 37268105
Alignment:
Q  91 ttaaggtaatttgg-ttgcttgtgtgtgggcaagttggaaagagagaaataactgaatctt 150  Q
    ||||||| |||||| |||||||||| |||||||  ||||||||||||||||| || |||||    
T  37268045 ttaaggttatttggcttgcttgtgtatgggcaatatggaaagagagaaataattgtatctt 37268105  T

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