View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3386_high_29 (Length: 249)

Name: NF3386_high_29
Description: NF3386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3386_high_29
NF3386_high_29
[»] chr3 (8 HSPs)
chr3 (1-238)||(51504477-51504715)
chr3 (126-181)||(38272693-38272748)
chr3 (98-181)||(41424795-41424878)
chr3 (123-181)||(2384382-2384439)
chr3 (127-180)||(11283934-11283987)
chr3 (123-181)||(245666-245724)
chr3 (138-181)||(1114228-1114271)
chr3 (128-170)||(55132309-55132351)
[»] chr7 (5 HSPs)
chr7 (112-181)||(48663036-48663105)
chr7 (113-179)||(21044931-21044997)
chr7 (123-181)||(41100379-41100437)
chr7 (114-181)||(21058978-21059046)
chr7 (128-181)||(45429059-45429111)
[»] chr4 (4 HSPs)
chr4 (141-184)||(17879202-17879245)
chr4 (138-181)||(49370220-49370263)
chr4 (123-181)||(38702677-38702735)
chr4 (129-181)||(19447081-19447133)
[»] chr8 (6 HSPs)
chr8 (135-181)||(5363591-5363637)
chr8 (130-184)||(35531197-35531251)
chr8 (113-177)||(18541142-18541206)
chr8 (113-175)||(12365424-12365486)
chr8 (123-174)||(34482630-34482681)
chr8 (98-170)||(32840369-32840441)
[»] chr5 (3 HSPs)
chr5 (123-181)||(42273388-42273446)
chr5 (113-181)||(14874090-14874156)
chr5 (138-229)||(28397068-28397161)
[»] chr6 (3 HSPs)
chr6 (121-181)||(285302-285362)
chr6 (141-181)||(7782650-7782690)
chr6 (123-181)||(16509332-16509390)
[»] chr1 (5 HSPs)
chr1 (129-181)||(24751351-24751403)
chr1 (123-182)||(6336038-6336097)
chr1 (133-181)||(36282289-36282337)
chr1 (123-181)||(5790886-5790944)
chr1 (121-169)||(12763585-12763633)
[»] chr2 (4 HSPs)
chr2 (138-181)||(10679240-10679283)
chr2 (131-181)||(10297877-10297926)
chr2 (140-181)||(28297325-28297366)
chr2 (140-181)||(37252138-37252179)
[»] scaffold0144 (1 HSPs)
scaffold0144 (123-179)||(5597-5653)
[»] scaffold0024 (1 HSPs)
scaffold0024 (138-181)||(24588-24630)


Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 51504715 - 51504477
Alignment:
Q  1 tcaatattatttatgtttggattgcgcgttttggaggattaagtctatattttggtatttatttgagatttattttnnnnnnnnttgatagaacagaatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||| |||    
T  51504715 tcaatattatttatgtttggattgcgcgttttggaggattaagtctatattttggtatttatttgagatttattttttaaaaaattgatagaacagcatg 51504616  T
Q  101 atatacgaccgaataacatcttaatcacacttaa-tttatttttagaaacattttatagcttccttaatttagaaaagaaaataaaccttctcctccaaa 199  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51504615 atatacgaccgaataacatcttaatcacacttaaatttatttttagaaacattttatagcttccttaatttagaaaagaaaataaaccttctcctccaaa 51504516  T
Q  200 attctcatccaaacataccctaacatatttcattttcat 238  Q
    |||||||||||||||||||||||||||||||||||||||    
T  51504515 attctcatccaaacataccctaacatatttcattttcat 51504477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 181
Target Start/End: Complemental strand, 38272748 - 38272693
Alignment:
Q  126 cacacttaatttatttttagaaacattttatagcttccttaatttagaaaagaaaa 181  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  38272748 cacacgtaattcatttttagaaacattttatagcttccttaatttaaaaaagaaaa 38272693  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 181
Target Start/End: Complemental strand, 41424878 - 41424795
Alignment:
Q  98 atgatatacgaccgaataacatcttaatcacacttaatttatttttagaaacattttatagcttccttaatttagaaaagaaaa 181  Q
    |||||| || ||| |||||||| | ||||||||||||||||||| ||||||||| | ||| |||| ||||||||||||||||||    
T  41424878 atgatagacaaccaaataacatttcaatcacacttaatttatttctagaaacatgtcataacttctttaatttagaaaagaaaa 41424795  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 2384382 - 2384439
Alignment:
Q  123 aatcacacttaatttatttttagaaacattttatagcttccttaatttagaaaagaaaa 181  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||    
T  2384382 aatcacacttaattcatttttagaaacattttataacttccttaattt-gaaaagaaaa 2384439  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 11283987 - 11283934
Alignment:
Q  127 acacttaatttatttttagaaacattttatagcttccttaatttagaaaagaaa 180  Q
    |||||| ||| ||||||||||||||||||||| || ||||||||||||||||||    
T  11283987 acacttcattcatttttagaaacattttatagttttcttaatttagaaaagaaa 11283934  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 123 - 181
Target Start/End: Complemental strand, 245724 - 245666
Alignment:
Q  123 aatcacacttaatttatttttagaaacattttatagcttccttaatttagaaaagaaaa 181  Q
    |||||||||| ||| ||||||| ||| |||||||||||| |||||||||| ||||||||    
T  245724 aatcacacttcattcatttttaaaaatattttatagcttgcttaatttagtaaagaaaa 245666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 181
Target Start/End: Complemental strand, 1114271 - 1114228
Alignment:
Q  138 atttttagaaacattttatagcttccttaatttagaaaagaaaa 181  Q
    ||||| |||||||||||||||||| ||| |||||||||||||||    
T  1114271 attttcagaaacattttatagcttgcttcatttagaaaagaaaa 1114228  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 55132351 - 55132309
Alignment:
Q  128 cacttaatttatttttagaaacattttatagcttccttaattt 170  Q
    ||||||||| ||| ||||||||||||||||| |||||||||||    
T  55132351 cacttaattcattcttagaaacattttatagtttccttaattt 55132309  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 181
Target Start/End: Complemental strand, 48663105 - 48663036
Alignment:
Q  112 aataacatcttaatcacacttaatttatttttagaaacattttatagcttccttaatttagaaaagaaaa 181  Q
    |||||||| | ||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  48663105 aataacatttcaattatacttaatttattttgagaaacattttatagcttccttaatttagaaaagaaaa 48663036  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 113 - 179
Target Start/End: Original strand, 21044931 - 21044997
Alignment:
Q  113 ataacatcttaatcacacttaatttatttttagaaacattttatagcttccttaatttagaaaagaa 179  Q
    ||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||  ||||||||||    
T  21044931 ataacattttaatcacacttaatttatttttaaaaacaatttatagcttccttaagctagaaaagaa 21044997  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 41100379 - 41100437
Alignment:
Q  123 aatcacacttaatttatttttagaaacattttatagcttccttaatttagaaaagaaaa 181  Q
    |||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||    
T  41100379 aatcacacttcattcatttttagaaacattttatagcttgcttaatttagaaaagaaaa 41100437  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 21058978 - 21059046
Alignment:
Q  114 taacatcttaatcacacttaatttatttttagaaacat-tttatagcttccttaatttagaaaagaaaa 181  Q
    |||||| | |||||||||||||||||||||| ||| || ||||||||||||||||  ||||||||||||    
T  21058978 taacatttcaatcacacttaatttatttttaaaaagatatttatagcttccttaagctagaaaagaaaa 21059046  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 45429111 - 45429059
Alignment:
Q  128 cacttaatttatttttagaaacattttatagcttccttaatttagaaaagaaaa 181  Q
    |||||||||||||||| |||||| |||||| ||| |||||||||||||| ||||    
T  45429111 cacttaatttatttttggaaaca-tttataactttcttaatttagaaaaaaaaa 45429059  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 141 - 184
Target Start/End: Complemental strand, 17879245 - 17879202
Alignment:
Q  141 tttagaaacattttatagcttccttaatttagaaaagaaaataa 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  17879245 tttagaaacattttatagcttccttaatttagaaaagaaaataa 17879202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 181
Target Start/End: Complemental strand, 49370263 - 49370220
Alignment:
Q  138 atttttagaaacattttatagcttccttaatttagaaaagaaaa 181  Q
    ||||||||||| |||||||||||| |||||||||||||||||||    
T  49370263 atttttagaaatattttatagcttgcttaatttagaaaagaaaa 49370220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 181
Target Start/End: Complemental strand, 38702735 - 38702677
Alignment:
Q  123 aatcacacttaatttatttttagaaacattttatagcttccttaatttagaaaagaaaa 181  Q
    |||||||||||||||||||| | || ||||||||||||| |||| | |||| |||||||    
T  38702735 aatcacacttaatttattttcaaaagcattttatagctttcttagtgtagataagaaaa 38702677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 19447133 - 19447081
Alignment:
Q  129 acttaatttatttttagaaacattttatagcttccttaatttagaaaagaaaa 181  Q
    ||||| ||||| ||||  ||||||||||| ||||| |||||||||||||||||    
T  19447133 acttagtttatctttaacaacattttatatcttccataatttagaaaagaaaa 19447081  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 5363637 - 5363591
Alignment:
Q  135 tttatttttagaaacattttatagcttccttaatttagaaaagaaaa 181  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  5363637 tttatttttagaaacattttatagtttccttaatttagaaaagaaaa 5363591  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 35531197 - 35531251
Alignment:
Q  130 cttaatttatttttagaaacattttatagcttccttaatttagaaaagaaaataa 184  Q
    |||||||||||||||||| ||||||| ||||||||| | ||||||||||||||||    
T  35531197 cttaatttatttttagaagcattttacagcttccttgacttagaaaagaaaataa 35531251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 177
Target Start/End: Complemental strand, 18541206 - 18541142
Alignment:
Q  113 ataacatcttaatcacacttaatttatttttagaaacattttatagcttccttaatttagaaaag 177  Q
    ||||||| ||||||| |||||||  |||||||  |||||||||||||||| |||||||| |||||    
T  18541206 ataacattttaatcaaacttaatgcatttttaataacattttatagcttctttaatttataaaag 18541142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 175
Target Start/End: Complemental strand, 12365486 - 12365424
Alignment:
Q  113 ataacatcttaatcacacttaatttatttttagaaacat-tttatagcttccttaatttagaaa 175  Q
    ||||||||| |||| ||||||| | |||||||||||||  ||||||||||||||||||||||||    
T  12365486 ataacatct-aatcgcacttaagtcatttttagaaacacctttatagcttccttaatttagaaa 12365424  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 174
Target Start/End: Original strand, 34482630 - 34482681
Alignment:
Q  123 aatcacacttaatttatttttagaaacattttatagcttccttaatttagaa 174  Q
    |||||||||| ||| |||||||||||||||||| | ||| ||||||||||||    
T  34482630 aatcacacttcattcatttttagaaacattttacatcttgcttaatttagaa 34482681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 32840441 - 32840369
Alignment:
Q  98 atgatatacgaccgaataacatcttaatcacacttaatttatttttagaaacattttatagcttccttaattt 170  Q
    |||||||| ||||  ||||||  | |||||||||| ||| ||| |||||||||||| ||||||| ||||||||    
T  32840441 atgatatatgaccatataacaattcaatcacacttcattcattattagaaacatttcatagcttgcttaattt 32840369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 181
Target Start/End: Complemental strand, 42273446 - 42273388
Alignment:
Q  123 aatcacacttaatttatttttagaaacattttatagcttccttaatttagaaaagaaaa 181  Q
    |||||||||| ||| ||||||||||||||||| |||||| |||||||||||||||||||    
T  42273446 aatcacacttcattcatttttagaaacattttgtagcttgcttaatttagaaaagaaaa 42273388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 181
Target Start/End: Complemental strand, 14874156 - 14874090
Alignment:
Q  113 ataacatcttaatcacacttaatttatttttagaaacattttatagcttccttaatttagaaaagaaaa 181  Q
    ||||||| | |||||||||||| ||  ||| | ||||||||||||||||||||||||||||||||||||    
T  14874156 ataacatttcaatcacacttaactt--tttaaaaaacattttatagcttccttaatttagaaaagaaaa 14874090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 229
Target Start/End: Complemental strand, 28397161 - 28397068
Alignment:
Q  138 atttttagaaacattttatagcttccttaatttagaaaa-gaaaataaaccttctcctccaaaattct-catccaaacataccctaacatattt 229  Q
    |||||||  |||||||||||| |||  |||||||||||| |||||||| | || ||||| ||||  || |||||||||||||||| ||||||||    
T  28397161 atttttattaacattttatagtttctataatttagaaaaagaaaataagcattttcctctaaaaaccttcatccaaacatacccttacatattt 28397068  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 181
Target Start/End: Complemental strand, 285362 - 285302
Alignment:
Q  121 ttaatcacacttaatttatttttagaaacattttatagcttccttaatttagaaaagaaaa 181  Q
    |||||| ||||| ||| ||||||| |||||||||||||||| ||||||||||||| |||||    
T  285362 ttaatctcactttattcatttttaaaaacattttatagcttacttaatttagaaatgaaaa 285302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 7782690 - 7782650
Alignment:
Q  141 tttagaaacattttatagcttccttaatttagaaaagaaaa 181  Q
    |||||||||||| ||||||||||||||| ||||||||||||    
T  7782690 tttagaaacattctatagcttccttaatatagaaaagaaaa 7782650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 181
Target Start/End: Complemental strand, 16509390 - 16509332
Alignment:
Q  123 aatcacacttaatttatttttagaaacattttatagcttccttaatttagaaaagaaaa 181  Q
    |||||||||| ||||||||||| |||||||||||||  || |||||| | |||||||||    
T  16509390 aatcacacttgatttatttttaaaaacattttatagtgtctttaattcaaaaaagaaaa 16509332  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 24751351 - 24751403
Alignment:
Q  129 acttaatttatttttagaaacattttatagcttccttaatttagaaaagaaaa 181  Q
    |||||||||||| ||||||||||||||||||||| |||||||  |||||||||    
T  24751351 acttaatttattattagaaacattttatagcttctttaattttcaaaagaaaa 24751403  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 182
Target Start/End: Original strand, 6336038 - 6336097
Alignment:
Q  123 aatcacacttaatttatttttagaaacattttatagcttccttaatttagaaaagaaaat 182  Q
    |||||| |||||||  |||||||||| |||||||| ||||||| ||||||||||||||||    
T  6336038 aatcactcttaattcgtttttagaaatattttataacttccttgatttagaaaagaaaat 6336097  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 36282337 - 36282289
Alignment:
Q  133 aatttatttttagaaacattttatagcttccttaatttagaaaagaaaa 181  Q
    |||||| ||||||||| |||||||||||| |||||||| ||||||||||    
T  36282337 aatttacttttagaaatattttatagctttcttaatttcgaaaagaaaa 36282289  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 5790886 - 5790944
Alignment:
Q  123 aatcacacttaatttatttttagaaacattttatagcttccttaatttagaaaagaaaa 181  Q
    |||||| ||||||||| ||||| | | |||||||||||||||||||||| |||| ||||    
T  5790886 aatcacgcttaatttacttttaaagaaattttatagcttccttaatttacaaaataaaa 5790944  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 12763585 - 12763633
Alignment:
Q  121 ttaatcacacttaatttatttttagaaacattttatagcttccttaatt 169  Q
    |||||||| ||| |||||| |||||||||||||| ||||||||| ||||    
T  12763585 ttaatcacgcttcatttatctttagaaacattttgtagcttcctcaatt 12763633  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 181
Target Start/End: Complemental strand, 10679283 - 10679240
Alignment:
Q  138 atttttagaaacattttatagcttccttaatttagaaaagaaaa 181  Q
    |||||||||||||||||||||||| ||| |||||||||||||||    
T  10679283 atttttagaaacattttatagcttgcttgatttagaaaagaaaa 10679240  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 10297926 - 10297877
Alignment:
Q  131 ttaatttatttttagaaacattttatagcttccttaatttagaaaagaaaa 181  Q
    |||||||||||||| ||  ||||||||||||||||||||||||||||||||    
T  10297926 ttaatttattttta-aagtattttatagcttccttaatttagaaaagaaaa 10297877  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 28297366 - 28297325
Alignment:
Q  140 ttttagaaacattttatagcttccttaatttagaaaagaaaa 181  Q
    |||||||||||||||||| |||  ||||||||||||||||||    
T  28297366 ttttagaaacattttatatctttgttaatttagaaaagaaaa 28297325  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 37252138 - 37252179
Alignment:
Q  140 ttttagaaacattttatagcttccttaatttagaaaagaaaa 181  Q
    |||||||||||||||||| |||  ||||||||||||||||||    
T  37252138 ttttagaaacattttatatctttgttaatttagaaaagaaaa 37252179  T

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Target: scaffold0144 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 5597 - 5653
Alignment:
Q  123 aatcacacttaatttatttttagaaacattttatagcttccttaatttagaaaagaa 179  Q
    |||||||||| ||| |||||||||||||||||||||||| | ||||||  |||||||    
T  5597 aatcacacttcattaatttttagaaacattttatagcttgcctaattttaaaaagaa 5653  T

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Target: scaffold0024 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 181
Target Start/End: Original strand, 24588 - 24630
Alignment:
Q  138 atttttagaaacattttatagcttccttaatttagaaaagaaaa 181  Q
    ||||||||||||||||||||||||  ||||||||||||||||||    
T  24588 atttttagaaacattttatagctt-tttaatttagaaaagaaaa 24630  T

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