View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3386_high_31 (Length: 239)
Name: NF3386_high_31
Description: NF3386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3386_high_31 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 2748002 - 2747780
Alignment:
| Q |
1 |
ctggggttatcaccatatctgatgacaacacaaaccttgcagtattagatggacaaaaacatgttatatggtcctcaaatgtctccaactttgcatcaaa |
100 |
Q |
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| T |
2748002 |
ctggggttatcaccatgtctgatgacaacacaaaccttgtagtactgaatggacaaaaacatgttatatggtcctcaaatgtctccaactttgcatcaaa |
2747903 |
T |
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| Q |
101 |
ttttaatgtcacagctcatcttcaaactactggaaacctcatcttgcaggaagacactacaggtattagagatataaatagttattggttaatttatact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2747902 |
ttttaatgtcacagctcatcttcaaactactggaaacctcgtcttgcaggaagacactacaggtattagagatataaatagttattggttaatttatact |
2747803 |
T |
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| Q |
201 |
ttgatattagttaactttatatg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
2747802 |
ttgatattagttaactttatatg |
2747780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 2721127 - 2720951
Alignment:
| Q |
1 |
ctggggttatcaccatatctgatgacaacacaaaccttgcagtattagatggacaaaaacatgttatatggtcctcaaatgtctccaactttgcatcaaa |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2721127 |
ctggggttatcaccatgtctgatgacaacacaaaccttgtagtactgaatggacaaaaacatgttatatggtcctcaaatgtctccaattttgcatcaaa |
2721028 |
T |
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| Q |
101 |
ttttaatgtcacagctcatcttcaaactactggaaacctcatcttgcaggaagacactacaggtattagagatataa |
177 |
Q |
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| T |
2721027 |
ttttaatgtcacagcttatattcaaaatactggaaacctcgtcttgcaggaagacactacaggtactagaaatataa |
2720951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 2726535 - 2726332
Alignment:
| Q |
1 |
ctggggttatcaccatatctgatgacaacacaaaccttgcagtattagatggacaaaaacatgttatatggtcctcaaatgtctcca---actttgcatc |
97 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||| | || |||| ||||||||||||||||| ||||||||||| | | || ||||| |
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| T |
2726535 |
ctggagttatcaccatatctgatgacaacacaaaccttgtagtactgaatagacacaaacatgttatatggtcatcaaatgtctcaagtaatttggcatc |
2726436 |
T |
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| Q |
98 |
---aaattttaatgtcacagctcatcttcaaactactggaaacctcatcttgcaggaagacactacaggtattagagatataaatagttattggttaatt |
194 |
Q |
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||||| ||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| | |||||| | ||||||| |
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| T |
2726435 |
ctcaaattctaatgtcactgctcagcttcaaaatactggaaacctcatcttgcaggaagacactacaggtattagaaatatgattagttagtagttaatt |
2726336 |
T |
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| Q |
195 |
tata |
198 |
Q |
| |
|
|||| |
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| T |
2726335 |
tata |
2726332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 2714951 - 2714872
Alignment:
| Q |
6 |
gttatcaccatatctgatgacaacacaaaccttgcagtattagatggacaaaaacatgttatatggtcctcaaatgtctc |
85 |
Q |
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|
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
2714951 |
gttatcaccatagctgatgacaacacaaaccttgtagtattagatggacaaaaacatgttgtatggtcatcaaatgtctc |
2714872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 2709924 - 2709840
Alignment:
| Q |
1 |
ctggggttatcaccatatctgatgacaacacaaaccttgcagtattagatggacaaaaacatgttatatggtcctcaaatgtctc |
85 |
Q |
| |
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||||||||||||| |||||| |||| |||| ||||||| |||| | |||||||||| |||||||||||||| ||||||||||| |
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| T |
2709924 |
ctggggttatcacaatatctcatgattacaccaaccttgtagtactgaatggacaaaagcatgttatatggtcatcaaatgtctc |
2709840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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