View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3386_high_5 (Length: 536)
Name: NF3386_high_5
Description: NF3386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3386_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 15 - 442
Target Start/End: Original strand, 43601883 - 43602310
Alignment:
| Q |
15 |
tcaaattatgaaaattatttctgcaccaaaacacagccccgcacatgataaagttgtctctgaaaacagttccacttgacaataatttgcagtctgtcac |
114 |
Q |
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| T |
43601883 |
tcaaattatgaaaattatttctgcaccaaaacacagccccgcacatgataaagttgtctctgaaaacagttccacttgacaataatttgcagtctgtcac |
43601982 |
T |
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| Q |
115 |
gtgcatcacgtgccagagctattaatttatagaattgttatccacttaacttaaccagggtagaaaaatttggtgacacatgtattggctttggatgctt |
214 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43601983 |
gtgcatcacgtgccagagctattaatttatagaatcgttatccacttaacttaaccagggtagaaaaatttggtga-acatgtattggctttggatgctt |
43602081 |
T |
|
| Q |
215 |
tgattcttactgattaattaaagagaaattagtcttcttctgctgaagtta-ttgattgcctttacctttagctagagaattgcgcatacatatgtacgg |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
43602082 |
tgattcttactgattaattaaagagaaattagtcttcttctgctgaagttagttgattgcctttacctttagctagagaattgcgcatacatatgtaccg |
43602181 |
T |
|
| Q |
314 |
agatttcacattgaatatgtgtataatgtctgacatgtgttagtgtcgtacactgatgcatgggttccattcaattactttcatctttaaaattattatt |
413 |
Q |
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|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43602182 |
agatttcacattgaatatgtgtctaatatctgacatgtgttagtgtcgtacactgatgcatgggttccattcaattactttcatctttaaaattattatt |
43602281 |
T |
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| Q |
414 |
gatgccaacactcagcatgtgtttgtatt |
442 |
Q |
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| T |
43602282 |
gatgccaacactcagcatgtgtttgtatt |
43602310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 434 - 525
Target Start/End: Original strand, 43602495 - 43602586
Alignment:
| Q |
434 |
gtttgtattagtgctatataggccaagagtagacactcttatatcaaaagcaatagcatgtgcttgtattctcaagtttagtcacttctcat |
525 |
Q |
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| T |
43602495 |
gtttgtattagtgctatataggccaagagtagacactcttatatcaaatgcaatagcatgtgcttgtattctcaagtttagtcacttctcat |
43602586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 22436329 - 22436220
Alignment:
| Q |
17 |
aaattatgaaaattatttctgcaccaaaacacagccccgcacatgataaagttgtctctgaaaacagttccacttgacaataatttgcagtctgtcacgt |
116 |
Q |
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||||||||||||| ||||||||||||||||| | ||||||||||||||||||| |||| | ||| |||||| ||||||||||||||| ||||||||| | |
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| T |
22436329 |
aaattatgaaaatgatttctgcaccaaaacatactcccgcacatgataaagttgcctcttataacggttccaattgacaataatttgcggtctgtcacat |
22436230 |
T |
|
| Q |
117 |
gcatcacgtg |
126 |
Q |
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|||||||||| |
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| T |
22436229 |
gcatcacgtg |
22436220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 22239124 - 22239084
Alignment:
| Q |
17 |
aaattatgaaaattatttctgcaccaaaacacagccccgca |
57 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| |
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| T |
22239124 |
aaattatgaaaattatttctgcaccaaaacacagtcccgca |
22239084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 37560642 - 37560602
Alignment:
| Q |
17 |
aaattatgaaaattatttctgcaccaaaacacagccccgca |
57 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| |
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| T |
37560642 |
aaattatgaaaattatttctgcaccaaaacacagtcccgca |
37560602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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