View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3386_high_7 (Length: 523)
Name: NF3386_high_7
Description: NF3386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3386_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 20 - 515
Target Start/End: Complemental strand, 2177963 - 2177472
Alignment:
| Q |
20 |
gttgcactgcatctgcattcgaaacatcctggacaaaggatttgttgattgctggcgccgtgggagagggcctatccgtagaaggaaccaaacaaggcca |
119 |
Q |
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| T |
2177963 |
gttgcactgcatctgcattcgaaacatcctggacaaaggatttgttgattgctggcgccgtgggagagggcctatccgtagagggaaccaaacaaggcca |
2177864 |
T |
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| Q |
120 |
agggcaaataacacccatgtctccaaagcttgtgatcgatggaatcaatgttggttctcgttcaattgaatcacaaagctaccttcgtcttatatttagc |
219 |
Q |
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| T |
2177863 |
agggcaaataacacccatgtctccgaagcttgtgatcgatggaatcaatgttggttctcgttcaattgaatcacaaagctaccttcgtcttatatttagc |
2177764 |
T |
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| Q |
220 |
atagagcataaagaacaagggttccttcacggaaaagatcacaaagctaaaaagcaagaaaaggacgttaaactagtacatgtcttatacaagaccaaat |
319 |
Q |
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| T |
2177763 |
atagagcataaagaacaagggttcctttacggaaaagatcacaaagttaaaaagcaagaaaaggacgttaaactattacatgtcttatataagaccaaat |
2177664 |
T |
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| Q |
320 |
tcagcataggcaagagagagttgttaaccctaattccagcgccaccaaccaaccaaccctagatgtcacataccatcatccattctattttggggctttt |
419 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| | | |||| ||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
2177663 |
tcagcataggcaagagagagttgttaaccctaattcaagcgcc----aacgaccatccctacctgtcacataccatcatccattctattttggagctttt |
2177568 |
T |
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| Q |
420 |
ggaatctatcatggaggagttggagctagtagagttgatactaagtaagaccatgcaaagaacctcagtatggttgttttgacttgtattcatctc |
515 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
2177567 |
ggaatctatcatggaggagttggagctagtagagttgatactaagtaagacgatgcaaagaacctcagtatggttggtttgacttgtattcttctc |
2177472 |
T |
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