View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3386_high_8 (Length: 515)
Name: NF3386_high_8
Description: NF3386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3386_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 16 - 510
Target Start/End: Complemental strand, 31701872 - 31701378
Alignment:
| Q |
16 |
caaaaacctcacttcttactactatataagaagtaaatgaacccatattttaaaaaatataaatgaaaaagctctcacaaagtaaacgcaacctttgatt |
115 |
Q |
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| T |
31701872 |
caaaaacctcacttcttactactatataagaagtaaatgaacccatattttaaaaaatataaatgaaaaagctctcacaaagtaaacgcaacctttgatt |
31701773 |
T |
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| Q |
116 |
tccaattgaataaaggatcaaccctggcaatcatatagcttcgattttgaacactcggggaggagtaatgaactaataatatttcaagcatccacattca |
215 |
Q |
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| T |
31701772 |
tccaattcaataaaggatcaaccctggcaatcatatagctttgattttgaacactcggggaggagtaatgaactaataatatttcaagcatccacattca |
31701673 |
T |
|
| Q |
216 |
agagaacaatgaatcaagagaacagtgttcaagaacgtatttacaattcaaaataacatcgttaatcaactacagtaatatgtatcaacagccttaacag |
315 |
Q |
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| T |
31701672 |
agagaacaatgaatcaagagaacagtgttcaagaacgtatttacaattcaaaataacatcgttaatcaactacagtaatatgtatcaacagccttaacag |
31701573 |
T |
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| Q |
316 |
tagtgtgataatccagtacaagaaacaggtgcaacatggaagccacaaagatttattaccagataagaacttgttttcgtataccactaaccccccatca |
415 |
Q |
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| T |
31701572 |
tagtgtgataatccagtacgagaaacaggtgcaacatggaagccacaaagatttattaacagataagaacttgttttcgtataccactaaccccccatca |
31701473 |
T |
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| Q |
416 |
gaaaacaaccagtacgtaccaatgagtacaaggacttcaactatcagcagctctgaaaatagtcagcaaagacaggaaaaggttgatgatgtcca |
510 |
Q |
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| T |
31701472 |
gaaaacaactagtacgtaccaataagtacaaggacttcaactatcagcagctctgaaaatagtgagcaaagacaggaaaaggttgatgatgtcca |
31701378 |
T |
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