View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3386_high_9 (Length: 465)
Name: NF3386_high_9
Description: NF3386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3386_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 8 - 447
Target Start/End: Complemental strand, 20600077 - 20599638
Alignment:
| Q |
8 |
tgagatgaaccattagtaagaatctaaggaagagtgtacctcaaggatatcactgaagaagaagacatgtcatcaataagatgagagctactgatagcca |
107 |
Q |
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| T |
20600077 |
tgagatgaaccattagtaagaatctcaggaagagtatacctcaaggatatcattgaagaagaagacatgtcatcaataagatgagagatactgatagcca |
20599978 |
T |
|
| Q |
108 |
tacctgaaacgtgatccacacgaacaaaccctgattcaagaataaaagcatgaacagcaaataccagtagtttgaaatcgctaatgtcgtcgccaagcgc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
20599977 |
tacctgaaacgtgatccacacgaacaaaccctgattcaagaataaaagcatgaacagcaaataccagtagtttgaaatcgctaacgtcgtcgccaagtgc |
20599878 |
T |
|
| Q |
208 |
ttctctaagcacccttttcacaaaattaggtgttgattccattctaatataatgatcggttgatgatggtaagagatgaagagtagcgttatgtggggag |
307 |
Q |
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| T |
20599877 |
ttctctaagcacccttttcacaaaattaggtgttgattccattctaatataatgatcggttgatgatggtaagagatgaagagtagcgttatgtggggag |
20599778 |
T |
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| Q |
308 |
aagcaattgttggtagcaatatataaatatatagtactatgatacatggtgttattaatagagtagtgttttgtggggagaaactattattgctggttag |
407 |
Q |
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| T |
20599777 |
aagcaattgttggtagcaatatataaatatatagtactatgatacatggtgttattaatagagtagtgttttgtggggagaaactattattgctggttag |
20599678 |
T |
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| Q |
408 |
caatatattactatgttttgtcacgcacgagtactgcgat |
447 |
Q |
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| T |
20599677 |
caatatattactatgttttgtcacgcacgagtactgcgat |
20599638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 8 - 282
Target Start/End: Complemental strand, 6133897 - 6133623
Alignment:
| Q |
8 |
tgagatgaaccattagtaagaatctaaggaagagtgtacctcaaggatatcactgaagaagaagacatgtcatcaataagatgagagctactgatagcca |
107 |
Q |
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|||| |||||||||||||||||||| ||||||||| |||||||| |||||| ||||||||||||||||||||| |||||||||||| ||| || || |
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| T |
6133897 |
tgaggtgaaccattagtaagaatctcaggaagagtatacctcaaacatatcattgaagaagaagacatgtcatctataagatgagaggaactaatcttca |
6133798 |
T |
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| Q |
108 |
tacctgaaacgtgatccacacgaacaaaccctgattcaagaataaaagcatgaacagcaaataccagtagtttgaaatcgctaatgtcgtcgccaagcgc |
207 |
Q |
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| T |
6133797 |
cacccgaaacgcgatccacacgaataaaccctgattcaagaataaaagcatgaactgcaaataccagtagtttgaaatcgctaacgtcatcaccaagcgc |
6133698 |
T |
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| Q |
208 |
ttctctaagcacccttttcacaaaattaggtgttgattccattctaatataatgatcggttgatgatggtaagag |
282 |
Q |
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| T |
6133697 |
ttctctaagcacccttttcacaaaatcaggtgttgattccattctaatatgatgatcagttcatgaaggtaagag |
6133623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 350
Target Start/End: Complemental strand, 6133491 - 6133439
Alignment:
| Q |
299 |
tgtggggagaagcaattgttgg-tagcaatatataaatatatagtactatgat |
350 |
Q |
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| T |
6133491 |
tgtggggagaagctattgttggttagcaatatataattatatatttctatgat |
6133439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 62 - 210
Target Start/End: Original strand, 47944888 - 47945036
Alignment:
| Q |
62 |
gaagaagaagacatgtcatcaataagatgagagctactgatagccatacctgaaacgtgatccacacgaacaaaccctgattcaagaataaaagcatgaa |
161 |
Q |
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|||||||||||||| ||||||| ||||| ||||| ||| || |||||||| ||||| | ||||||||||||||||| ||||||||||||| |||||||| |
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| T |
47944888 |
gaagaagaagacatatcatcaacaagattagagcaactaatcgccatacccgaaacctcgtccacacgaacaaacccagattcaagaataacagcatgaa |
47944987 |
T |
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| Q |
162 |
cagcaaataccagtagtttgaaatcgctaatgtcgtcgccaagcgcttc |
210 |
Q |
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| T |
47944988 |
ccgcaaacaccaacagcttcaaatcactaacatcatcaccaagcgcttc |
47945036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 47944801 - 47944862
Alignment:
| Q |
8 |
tgagatgaaccattagtaagaatctaaggaagagtgtacctcaaggatatcactgaagaaga |
69 |
Q |
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| T |
47944801 |
tgagatgaaccattggtaagaatctcaggaagagtatacctcaaagatatcattgatgaaga |
47944862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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