View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3386_low_11 (Length: 423)
Name: NF3386_low_11
Description: NF3386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3386_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 4645680 - 4646082
Alignment:
| Q |
1 |
atttattataattaacnnnnnnngagaaaatacaagatagctagcttggaatgaatttcatcatatcataggaattatattgcatatagaataaaagatc |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4645680 |
atttattataattaactttatttgagaaaatacaagatagctagcttggaatgaatttcatcatatcataggaattatattgcatatagaataaaagatc |
4645779 |
T |
|
| Q |
101 |
attaattaagcatagaaagtggttaattaggcaatgtagtagaggggatcagggagcttgaaagtcctttcaccagtgttggttccaagaatatcactcc |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4645780 |
attaattaagcacagaaagtggttaattaggcaatgtagtagaggggatcagggagcttgaaagtcctttcaccagtattggttccaagaatatcactcc |
4645879 |
T |
|
| Q |
201 |
attgatctccaatgtttccaacaattctgtatccttcttcctccaatttctttctctcagatgatttgtatgtaactgctgttttaccatgatatatggt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4645880 |
attgatctccaatgtttccaacaattctgtatccttcttcctccaatttctttctctcagatgatttgtatgtaactgctgttttaccatgatatatggt |
4645979 |
T |
|
| Q |
301 |
tgtattcctgcaaccnnnnnnntttagtatattttttaatgtacatacaaattaatacta-ttttcttaagtttaatataatatgctagtttaagtcgtt |
399 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
4645980 |
tgtattcctgcaaccaaaaaaatttagtatattttttaatgtacatacaaattaatactattttttttaagtttaatataatatgctagtttaagtcgtt |
4646079 |
T |
|
| Q |
400 |
gat |
402 |
Q |
| |
|
||| |
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|
| T |
4646080 |
gat |
4646082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 131 - 296
Target Start/End: Original strand, 4650104 - 4650269
Alignment:
| Q |
131 |
gcaatgtagtagaggggatcagggagcttgaaagtcctttcaccagtgttggttccaagaatatcactccattgatctccaatgtttccaacaattctgt |
230 |
Q |
| |
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||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||| |
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| T |
4650104 |
gcaatgtagtaaagaggatcagggagcttgaaagtcctttcaccagtgttggttccaagaatatcactccattggtctccactgtttccaataattctcc |
4650203 |
T |
|
| Q |
231 |
atccttcttcctccaatttctttctctcagatgatttgtatgtaactgctgttttaccatgatata |
296 |
Q |
| |
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|||||||||| || | |||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
4650204 |
atccttcttcttcaagcttctttctctcagatgatttgtattgaactgcagttttaccatgatata |
4650269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 136 - 295
Target Start/End: Complemental strand, 23682147 - 23681988
Alignment:
| Q |
136 |
gtagtagaggggatcagggagcttgaaagtcctttcaccagtgttggttccaagaatatcactccattgatctccaatgtttccaacaattctgtatcct |
235 |
Q |
| |
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|||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||| |||||| ||||| |
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| T |
23682147 |
gtagtaaagaggatcagggagtttgaaagtcctttcaccagtgttggttccaagaatatcactccattggtctccactatttccaataattctccatcct |
23682048 |
T |
|
| Q |
236 |
tcttcctccaatttctttctctcagatgatttgtatgtaactgctgttttaccatgatat |
295 |
Q |
| |
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||||| || | |||||||||||||||||||||||| || |||| |||||||||||||| |
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|
| T |
23682047 |
tcttcttcaagcttctttctctcagatgatttgtattgaaatgctattttaccatgatat |
23681988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 206 - 310
Target Start/End: Original strand, 41872257 - 41872361
Alignment:
| Q |
206 |
tctccaatgtttccaacaattctgtatccttcttcctccaatttctttctctcagatgatttgtatgtaactgctgttttaccatgatatatggttgtat |
305 |
Q |
| |
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||||| |||||||||| ||| |||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
41872257 |
tctcctatgtttccaatgattttgtatccttcttcctccagcttctttctctctgacgatttgtatgtaactgctgttttaccatgatatattgatgtat |
41872356 |
T |
|
| Q |
306 |
tcctg |
310 |
Q |
| |
|
|||| |
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|
| T |
41872357 |
ccctg |
41872361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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