View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3386_low_18 (Length: 356)
Name: NF3386_low_18
Description: NF3386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3386_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 85 - 345
Target Start/End: Original strand, 34483676 - 34483939
Alignment:
| Q |
85 |
gataataactctcttaattagacacttaatttcaatgcaactttggcttcatttggcatacaagtatttgaatttgtggaagatatgttgttgacaagct |
184 |
Q |
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| T |
34483676 |
gataataactctcttaattagacacttaatttcaatgcaactttggcttcatttggcatacaagtatttgaatttgcggaagatatgttgttgacaagct |
34483775 |
T |
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| Q |
185 |
ggtagttacgtacagaatgttactctttatttattctgtaatgccacaagcctttttctgcaccataatgtacgtgattctccttcgtatttttatttat |
284 |
Q |
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| T |
34483776 |
attagttacgtacagaatgttactctttatttattctgtaattccacaagccttcttctgcaccataatgtac-ttattctccttcgtatttttatttat |
34483874 |
T |
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| Q |
285 |
taatttataaaatatataaattagttccgca----atctcatttatcattcaatctcgacttcat |
345 |
Q |
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| T |
34483875 |
taatttataaaatatataaattagttccgcaatatatctcatttatcattcaatctcgacttcat |
34483939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 34482681 - 34482731
Alignment:
| Q |
17 |
atgtatgactctcttttgcaaaaagacttgttgagagacgtgagttgagag |
67 |
Q |
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| T |
34482681 |
atgtatgactctcttttgcaaaaagacttgttgagagacgtgagttgagag |
34482731 |
T |
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