View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3386_low_19 (Length: 354)
Name: NF3386_low_19
Description: NF3386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3386_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 19 - 336
Target Start/End: Complemental strand, 1892368 - 1892051
Alignment:
| Q |
19 |
catcgaacgtttatattagttcaagacgaaccattaaaggttctgttcaattttaccgaactattttaacagttcggttcaattttcctcgtagttacat |
118 |
Q |
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| T |
1892368 |
catcgaacgtttatattagttcaagacgaaccattaaaggttctgttcaattttaccgaactattttaacagttcggttcaattttcctcgtagttacat |
1892269 |
T |
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| Q |
119 |
gcaatgatcacttacattttctacatgtcaatgtagtatttaatgttcatgactctttcagtgtttcatatgtttccgaacttcaattcttaaagtataa |
218 |
Q |
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| T |
1892268 |
tcaatgatcacttacattttctacatgtcagtgtagtatttaatgttcatgactctttcagtgtttcatatgtttccgaacttcaattcttaaagtataa |
1892169 |
T |
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| Q |
219 |
cgtctctcattttgcataatactaatcctacctgaaaaatgtagcgtagcgatagcagaaagaagtcaattgttagcagaatgccaccaatcgcccaact |
318 |
Q |
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| T |
1892168 |
cgtctctcattttgcataatactaatcctacctgaaaaatgtagcgtagcgatagcagaaagaagtcaattgttagcagaatgccaccaatcgcccaact |
1892069 |
T |
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| Q |
319 |
tgaatccgctgccatgag |
336 |
Q |
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| T |
1892068 |
tgaatccactgccatgag |
1892051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 215 - 325
Target Start/End: Complemental strand, 1912994 - 1912884
Alignment:
| Q |
215 |
ataacgtctctcattttgcataatactaatcctacctgaaaaatgtagcgtagcgatagcagaaagaagtcaattgttagcagaatgccaccaatcgccc |
314 |
Q |
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| T |
1912994 |
ataacatctatcattttgcataatagtaaccctacctgtaaaatgtaccatagtgaaaccagaaaatagtcaattgtcagcagaataccagcaatggccc |
1912895 |
T |
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| Q |
315 |
aacttgaatcc |
325 |
Q |
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| T |
1912894 |
aacttgaatcc |
1912884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 1903128 - 1903076
Alignment:
| Q |
198 |
acttcaattcttaaagtataacgtctctcattttgcataatactaatcctacc |
250 |
Q |
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|||| |||| |||| |||||| ||||||||||||||||||||||| |||||| |
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| T |
1903128 |
actttaatttttaatgtataatatctctcattttgcataatactaaccctacc |
1903076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 1907361 - 1907309
Alignment:
| Q |
198 |
acttcaattcttaaagtataacgtctctcattttgcataatactaatcctacc |
250 |
Q |
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|||| |||| |||| |||||| ||||||||||||||||||||||| |||||| |
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| T |
1907361 |
actttaatttttaatgtataatatctctcattttgcataatactaaccctacc |
1907309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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