View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3386_low_20 (Length: 350)

Name: NF3386_low_20
Description: NF3386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3386_low_20
NF3386_low_20
[»] chr5 (34 HSPs)
chr5 (14-306)||(26299464-26299761)
chr5 (14-319)||(39408724-39409040)
chr5 (14-306)||(27450807-27451112)
chr5 (14-306)||(34719883-34720185)
chr5 (14-319)||(19715778-19716091)
chr5 (14-300)||(26297929-26298227)
chr5 (14-306)||(34856964-34857269)
chr5 (16-204)||(34724970-34725163)
chr5 (14-306)||(34723871-34724161)
chr5 (14-310)||(39406995-39407312)
chr5 (229-306)||(10493397-10493474)
chr5 (178-321)||(27195426-27195574)
chr5 (169-284)||(18879665-18879780)
chr5 (169-284)||(32157365-32157480)
chr5 (229-321)||(4984005-4984102)
chr5 (229-306)||(41782717-41782794)
chr5 (236-317)||(1841024-1841115)
chr5 (229-284)||(11136703-11136758)
chr5 (229-306)||(26217441-26217523)
chr5 (236-284)||(3805420-3805468)
chr5 (239-303)||(28242411-28242475)
chr5 (236-312)||(39413361-39413437)
chr5 (169-216)||(22921544-22921591)
chr5 (169-284)||(27905525-27905640)
chr5 (236-289)||(28430589-28430642)
chr5 (236-284)||(43385843-43385891)
chr5 (169-216)||(1224677-1224724)
chr5 (241-284)||(14501398-14501441)
chr5 (236-283)||(19283631-19283678)
chr5 (169-216)||(29322164-29322211)
chr5 (169-216)||(38523237-38523284)
chr5 (172-282)||(5385072-5385182)
chr5 (238-283)||(15931983-15932028)
chr5 (171-216)||(15932050-15932095)
[»] chr1 (28 HSPs)
chr1 (14-216)||(38061410-38061617)
chr1 (14-97)||(7995006-7995089)
chr1 (169-284)||(37441793-37441908)
chr1 (169-306)||(24575318-24575460)
chr1 (169-306)||(43090012-43090149)
chr1 (229-306)||(5205150-5205232)
chr1 (229-306)||(38061659-38061741)
chr1 (236-295)||(44595858-44595917)
chr1 (169-284)||(32179378-32179493)
chr1 (169-284)||(36418565-36418680)
chr1 (187-319)||(15257844-15257981)
chr1 (228-306)||(47982684-47982762)
chr1 (250-319)||(40160347-40160416)
chr1 (236-312)||(3576955-3577031)
chr1 (229-312)||(7994758-7994846)
chr1 (169-216)||(24470506-24470553)
chr1 (237-283)||(28005781-28005827)
chr1 (229-306)||(29678144-29678226)
chr1 (230-306)||(7955667-7955748)
chr1 (239-284)||(13645766-13645811)
chr1 (175-220)||(42936606-42936651)
chr1 (230-326)||(50445480-50445581)
chr1 (236-283)||(21681669-21681716)
chr1 (236-310)||(31868903-31868982)
chr1 (236-283)||(45654414-45654461)
chr1 (229-283)||(7840786-7840839)
chr1 (243-277)||(47603463-47603497)
chr1 (238-282)||(35309055-35309099)
[»] chr4 (32 HSPs)
chr4 (68-311)||(1803180-1803433)
chr4 (229-320)||(44377614-44377705)
chr4 (169-284)||(49820423-49820538)
chr4 (239-319)||(16743169-16743249)
chr4 (239-312)||(46945225-46945303)
chr4 (169-284)||(50605500-50605615)
chr4 (177-291)||(28266732-28266846)
chr4 (169-277)||(53369114-53369222)
chr4 (169-284)||(9469472-9469587)
chr4 (169-284)||(19850177-19850292)
chr4 (169-284)||(48977049-48977164)
chr4 (238-312)||(50711490-50711564)
chr4 (177-283)||(43386580-43386686)
chr4 (177-283)||(52813045-52813151)
chr4 (176-320)||(24009417-24009566)
chr4 (169-312)||(51409094-51409242)
chr4 (169-216)||(36543407-36543454)
chr4 (169-216)||(44792773-44792820)
chr4 (169-284)||(21436352-21436467)
chr4 (229-283)||(51994129-51994183)
chr4 (239-284)||(52705638-52705683)
chr4 (240-284)||(7505469-7505513)
chr4 (274-322)||(32398468-32398516)
chr4 (236-283)||(4275589-4275636)
chr4 (228-283)||(25133979-25134034)
chr4 (169-216)||(45674405-45674452)
chr4 (261-319)||(38791072-38791130)
chr4 (242-284)||(52813012-52813054)
chr4 (169-206)||(22183886-22183923)
chr4 (239-303)||(9874603-9874667)
chr4 (180-216)||(12790149-12790185)
chr4 (237-277)||(22720796-22720836)
[»] chr3 (23 HSPs)
chr3 (14-105)||(49026108-49026199)
chr3 (169-284)||(39471059-39471174)
chr3 (185-306)||(25252892-25253018)
chr3 (236-295)||(9505888-9505947)
chr3 (229-306)||(7834080-7834157)
chr3 (239-319)||(30662813-30662898)
chr3 (236-285)||(39133822-39133871)
chr3 (229-317)||(40942902-40942995)
chr3 (229-277)||(5418095-5418143)
chr3 (236-284)||(20407797-20407845)
chr3 (230-289)||(7521781-7521840)
chr3 (169-216)||(32688672-32688719)
chr3 (235-312)||(33152104-33152181)
chr3 (169-213)||(45714219-45714263)
chr3 (177-216)||(23206925-23206964)
chr3 (237-295)||(8086982-8087040)
chr3 (229-283)||(12710106-12710159)
chr3 (238-283)||(27040593-27040638)
chr3 (236-277)||(30740784-30740825)
chr3 (239-284)||(39943782-39943827)
chr3 (172-213)||(53530140-53530181)
chr3 (236-284)||(38644271-38644319)
chr3 (236-319)||(52934231-52934319)
[»] scaffold0444 (1 HSPs)
scaffold0444 (229-320)||(1453-1544)
[»] chr2 (18 HSPs)
chr2 (236-311)||(40675183-40675258)
chr2 (169-282)||(12139413-12139526)
chr2 (169-284)||(36538122-36538237)
chr2 (169-282)||(41958594-41958707)
chr2 (169-284)||(20986109-20986224)
chr2 (238-284)||(2647649-2647695)
chr2 (169-216)||(27633255-27633302)
chr2 (236-277)||(3409896-3409937)
chr2 (236-284)||(26435812-26435860)
chr2 (169-213)||(33164544-33164588)
chr2 (177-217)||(34064241-34064281)
chr2 (169-216)||(33830991-33831038)
chr2 (177-219)||(20204376-20204418)
chr2 (235-277)||(29804315-29804357)
chr2 (235-284)||(18667170-18667219)
chr2 (228-289)||(40458372-40458433)
chr2 (178-284)||(44741285-44741391)
chr2 (259-295)||(30711497-30711533)
[»] chr6 (16 HSPs)
chr6 (169-284)||(10346257-10346372)
chr6 (181-295)||(12428077-12428191)
chr6 (169-284)||(7957099-7957214)
chr6 (171-284)||(18961890-18962003)
chr6 (229-284)||(33109877-33109932)
chr6 (259-321)||(26643896-26643958)
chr6 (259-321)||(26749862-26749924)
chr6 (169-311)||(25181145-25181287)
chr6 (169-216)||(6998660-6998707)
chr6 (235-277)||(22295408-22295450)
chr6 (238-291)||(9463744-9463797)
chr6 (236-284)||(6998621-6998669)
chr6 (169-216)||(472939-472986)
chr6 (229-283)||(3082371-3082425)
chr6 (229-306)||(7436718-7436800)
chr6 (187-312)||(13311360-13311490)
[»] chr7 (30 HSPs)
chr7 (235-312)||(36471821-36471898)
chr7 (229-312)||(45054805-45054893)
chr7 (177-320)||(18250634-18250782)
chr7 (169-312)||(35544149-35544296)
chr7 (236-306)||(22074584-22074654)
chr7 (169-284)||(3931328-3931444)
chr7 (169-284)||(37333742-37333858)
chr7 (177-284)||(42071565-42071672)
chr7 (178-284)||(26215762-26215868)
chr7 (171-284)||(7539633-7539746)
chr7 (169-277)||(666196-666304)
chr7 (169-216)||(28950285-28950332)
chr7 (169-284)||(43052327-43052442)
chr7 (230-306)||(17026039-17026120)
chr7 (257-306)||(26719177-26719226)
chr7 (236-284)||(36926454-36926502)
chr7 (169-216)||(388528-388575)
chr7 (169-216)||(15433730-15433777)
chr7 (247-289)||(33172195-33172237)
chr7 (236-284)||(7443874-7443922)
chr7 (169-306)||(18740839-18740976)
chr7 (177-216)||(5795494-5795533)
chr7 (236-283)||(20259977-20260024)
chr7 (169-284)||(222923-223038)
chr7 (169-284)||(5776545-5776660)
chr7 (240-306)||(10618044-10618110)
chr7 (244-289)||(23236837-23236882)
chr7 (236-285)||(41449191-41449240)
chr7 (236-321)||(48633252-48633337)
chr7 (248-319)||(33899664-33899740)
[»] chr8 (9 HSPs)
chr8 (238-319)||(43966887-43966973)
chr8 (239-306)||(13784228-13784295)
chr8 (236-295)||(22930896-22930955)
chr8 (236-312)||(25731901-25731982)
chr8 (170-277)||(11161130-11161237)
chr8 (229-283)||(12377767-12377821)
chr8 (236-277)||(17865721-17865762)
chr8 (228-319)||(39477423-39477519)
chr8 (236-283)||(9413311-9413358)
[»] scaffold0746 (1 HSPs)
scaffold0746 (238-306)||(5335-5403)
[»] scaffold0316 (1 HSPs)
scaffold0316 (172-284)||(18755-18867)
[»] scaffold0658 (1 HSPs)
scaffold0658 (236-283)||(6440-6487)
[»] scaffold0106 (1 HSPs)
scaffold0106 (229-283)||(26539-26593)


Alignment Details
Target: chr5 (Bit Score: 170; Significance: 3e-91; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 14 - 306
Target Start/End: Complemental strand, 26299761 - 26299464
Alignment:
Q  14 gagaagtgcatctcaattataatgtaaaagctatacatgtagtatatggattgtgctgcagtagtaatgtacgcttcatagttttactttttatttttaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||    
T  26299761 gagaagtgcatctcaattataatgtaaaagctatacatgtagtatatggattgtgctgcagtagtaatgtatgcttcatagtttttttttttatttttaa 26299662  T
Q  114 atatgtcaaatatttttgacnnnnnnnnnggtttgtgaaatatacaattcaagtaaacgagctgaaccgaactgttcttgaactttaaacgagacgaact 213  Q
    |||  |||||||||||||||          |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  26299661 ataaatcaaatatttttgacaaaaaaaaaagtttgtgaaatatacaattcgagtaaacgagctgaaccgaactgttcgtgaactttaaacgagccgaact 26299562  T
Q  214 cgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaattctta-----tcgaatcgagctcagacaggtttgactcgactc 306  Q
    |||  ||        |||| |||||||||||||||||||||| |||||||||||||||||     |||||||||||||||||| ||||||||||||||    
T  26299561 cgagtttaaaaaaaggttcacttcgaactcgagtcgagtttcgagccgaaccaattcttatcgagtcgaatcgagctcagacaagtttgactcgactc 26299464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 14 - 319
Target Start/End: Complemental strand, 39409040 - 39408724
Alignment:
Q  14 gagaagtgcatctcaattataatgtaaaagctatacatgtagtatatggattgtgctgcagtagtaatgtacgcttcatagttttactttt------tat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||      |||    
T  39409040 gagaagtgcatctcaattataatgtaaaagctatacatgtagtatatggattgtgctgcagtagtgatttacgcttcatagttttactttttttttatat 39408941  T
Q  108 ttttaaatatgtcaaatatttttgacnnnnnnnnnggtttgtgaaatatacaattcaagtaaacgagctgaaccgaactgttcttgaactttaaacgaga 207  Q
    ||| ||||||||||||||||||||||          |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||     
T  39408940 tttaaaatatgtcaaatatttttgacaaaaaaaaaagtttgtgaaatatacaattcgagtaaacgagctgaaccgaactgttcgtgaactttaaacgagc 39408841  T
Q  208 cgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaattctta-----tcgaatcgagctcagacaggtttgactcg 302  Q
    ||||||||| |||        ||||||||||||||||||||||||||| |||||||||||||||||     ||||||||||||| |||||||  ||||||    
T  39408840 cgaactcgagcttaaaaaaaagttcgcttcgaactcgagtcgagtttcgagccgaaccaattcttatcgagtcgaatcgagctcggacaggtacgactcg 39408741  T
Q  303 actcatttcctgcccta 319  Q
    |||||||| | ||||||    
T  39408740 actcattttcagcccta 39408724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 14 - 306
Target Start/End: Original strand, 27450807 - 27451112
Alignment:
Q  14 gagaagtgcatctcaattataatgtaaaagctatacatgtagtatatggattgtgctgcagtagtaatgtacgcttcatagttttac-------ttttta 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||       |||||     
T  27450807 gagaagtgcatctcaattataatgtaaaagctatacatgtagtatatggattgtcctgcagtagtaatgtacgcttcatagttttacttctttttttttt 27450906  T
Q  107 tttttaaatatgtcaaatatttttgac-nnnnnnnnnggtttgtgaaatatacaattcaagtaaacgagctgaaccgaactgttcttgaactttaaacga 205  Q
     ||||||||| || |||||||||||||          ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  27450907 attttaaataagttaaatatttttgacaaaaaaaaaaggtttgtgaaatatacaattcgagtaaacgagctgaaccgaactgttcgtgaactttaaacga 27451006  T
Q  206 gacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaattctta-----tcgaatcgagctcagacaggtttgact 300  Q
    | |||||||||  ||       |||||||||||||||||||| ||||||| |||||||||||||||||     |||||||||||||||||||||||||||    
T  27451007 gccgaactcgagtttaaaaaaatgttcgcttcgaactcgagttgagtttcgagccgaaccaattcttatcgagtcgaatcgagctcagacaggtttgact 27451106  T
Q  301 cgactc 306  Q
    ||||||    
T  27451107 cgactc 27451112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 14 - 306
Target Start/End: Original strand, 34719883 - 34720185
Alignment:
Q  14 gagaagtgcatctcaattataatgtaaaagctatacatgtagtatatggattgtgctgcagtagtaatgtacgcttcatagttttac---tttttatttt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||   ||||| ||||    
T  34719883 gagaagtgcatctcaattataatgtaaaagctatacatgtagtatatggattgtgctgcagtagtgatttacgcttcataattttacttttttttttttt 34719982  T
Q  111 taaatatgtcaaatatttttgac--nnnnnnnnnggtttgtgaaatatacaattcaagtaaacgagctgaaccgaactgttcttgaactttaaacgagac 208  Q
    |||||||||||||||||||||||           ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||      
T  34719983 taaatatgtcaaatatttttgacaaaaaaaaaaaggtttgtgaaatatacaattcgagtaaacgagctgaaccgaactgttcgtgaactttaaacgagct 34720082  T
Q  209 gaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaattctta-----tcgaatcgagctcagacaggtttgactcga 303  Q
    |||||||| |||        ||||||||||||||||||||||||||| | |||||||||||||||     ||||||||||||| |||||||| |||||||    
T  34720083 gaactcgagcttaaaaaaaagttcgcttcgaactcgagtcgagtttcgaaccgaaccaattcttatcgagtcgaatcgagctcggacaggttcgactcga 34720182  T
Q  304 ctc 306  Q
    |||    
T  34720183 ctc 34720185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 14 - 319
Target Start/End: Complemental strand, 19716091 - 19715778
Alignment:
Q  14 gagaagtgcatctcaattataatgtaaaagctatacatgtagtatatggattgtgctgcagtagtaatgtacgcttcatagttttactt---tttatttt 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||| ||||    
T  19716091 gagaagtgcatctcaattataatgtaaaagctatacatgtagtatatggattgtgctgcagtagtaatgtacgcttcatagttttacttttatttttttt 19715992  T
Q  111 taaatatgtcaaatatttttg-acnnnnnnnnnggtttgtgaaatatacaattcaagtaaacgagctgaaccgaactgttcttgaactttaaacgagacg 209  Q
     |||||||||||||||||||| |          ||||||||||||||||||||| |||||||||||| | ||||||| ||| ||||||||||||||| ||    
T  19715991 aaaatatgtcaaatatttttgaaaaaaaaaaaaggtttgtgaaatatacaattcgagtaaacgagctaagccgaactattcgtgaactttaaacgagccg 19715892  T
Q  210 aactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaattctta-----tcgaatcgagctcagacaggtttgactcgac 304  Q
    |||||| | ||        ||||||||||||||||||||||||||| ||||||||||||| |||     |||||||||||||||||| ||| ||||| ||    
T  19715891 aactcg-agtttaaaaaaggttcgcttcgaactcgagtcgagtttcgagccgaaccaattattatcgagtcgaatcgagctcagacaagttcgactctac 19715793  T
Q  305 tcatttcctgcccta 319  Q
    |||||||| ||||||    
T  19715792 tcatttccagcccta 19715778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 14 - 300
Target Start/End: Complemental strand, 26298227 - 26297929
Alignment:
Q  14 gagaagtgcatctcaattataatgtaaaagctatacatgtagtatatggattgtgctgcagtagtaatgtacgcttcatagttttact-------tttta 106  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||       ||||     
T  26298227 gagaagtgcatctcaattataatgtaaaagctatacaagtagtatatggattgtgctgcagtagtaatgtacgcttcatagttttacttttttttttttt 26298128  T
Q  107 tttttaaatatgtcaaatatttttgacnnnnnnnnnggtttgtgaaatatacaattcaagtaaacgagctgaaccgaactgttcttgaactttaaacgag 206  Q
    |||||||||| ||||||||||||||||          |||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||    
T  26298127 tttttaaataagtcaaatatttttgacaaaaaaaaaagtttgtgaaatatacaattcgagtaaacgagctgaaccgaactattcgtgaactttaaacgag 26298028  T
Q  207 acgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaattctta-----tcgaatcgagctcagacaggtttgact 300  Q
     |||||||||  ||        ||||||||||||||||| ||||||||| |||||||||||||||||     |||||||||||||| ||||||||||||    
T  26298027 ccgaactcgagtttaaaaaaaggttcgcttcgaactcgaatcgagtttcgagccgaaccaattcttatcgagtcgaatcgagctcacacaggtttgact 26297929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 14 - 306
Target Start/End: Complemental strand, 34857269 - 34856964
Alignment:
Q  14 gagaagtgcatctcaattataatgtaaaagctatacatgtagtatatggattgtgctgcagtagtaatgtacgcttcatagttttact------------ 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||                
T  34857269 gagaagtgcatctcaattataatgtaaaagctatacatgtagtatatggattgtgctgcagtagtaatgtacacttcatagttttacttttttttttttt 34857170  T
Q  102 -ttttatttttaaatatgtcaaatatttttgacnnnnnnnnnggtttgtgaaatatacaattcaagtaaacgagctgaaccgaactgttcttgaacttta 200  Q
     |||| |||||||||||||||||||||||||||         ||||||||||||||||||||| |||||||||||||||||||||||||| |||||        
T  34857169 tttttttttttaaatatgtcaaatatttttgac-aaaaaaaaggtttgtgaaatatacaattcgagtaaacgagctgaaccgaactgttcgtgaac---- 34857075  T
Q  201 aacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaattctta-----tcgaatcgagctcagacaggtt 295  Q
    |||||| |||||||||||||       ||||||||||||||||||||| |||||| |||||||||||||||||     ||||||||| ||||||||| ||    
T  34857074 aacgagccgaactcgaacttaaaaaaatgttcgcttcgaactcgagtcaagtttcgagccgaaccaattcttatcgagtcgaatcgaactcagacagatt 34856975  T
Q  296 tgactcgactc 306  Q
     ||||||||||    
T  34856974 cgactcgactc 34856964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 34724970 - 34725163
Alignment:
Q  16 gaagtgcatctcaattataatgtaaaagctatacatgtagtatatggattgtgctgcagtagtaatgtacgcttcatagttttactttttattttt---- 111  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||        
T  34724970 gaagtgcatctcaattataatgtaaaagttatacatgtagtatatggattgtgctgcagtagtaatgtacgcttcatagttttacttttttttttttttt 34725069  T
Q  112 -aaatatgtcaaatatttttgacnnnnnnnnnggtttgtgaaatatacaattcaagtaaacgagctgaaccgaactgttcttgaactttaaacg 204  Q
     |||| |||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  34725070 aaaatgtgtcaaatatttttgaccaaaaaaaaggtttgtgaaatatacaattcaagtaaacgagctgaaccgaactgttcatgaactttaaacg 34725163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 14 - 306
Target Start/End: Original strand, 34723871 - 34724161
Alignment:
Q  14 gagaagtgcatctcaattataatgtaaaagctatacatgtagtatatggattgtgctgcagtagtaatgtacgcttcatagttttactttttatttttaa 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||        |||||||    
T  34723871 gagaagtgcatctcaattataatgtaaaagctatacatgtagtatacggattgtgctgcagtagtgatttacgcttcatagtttt--------tttttaa 34723962  T
Q  114 atatgtcaaatatttttgac-nnnnnnnnnggtttgtgaaatatacaattcaagtaaacgagctgaaccgaactgttcttgaactttaaacgagacgaac 212  Q
    ||||||||||||||||||||           |||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||  ||||    
T  34723963 atatgtcaaatatttttgacaaaaaaaaaaagtttgtgaaatatacaattcgagtaaacgagctgaaccgaactgttcgtgaactctaaacgagctgaac 34724062  T
Q  213 tcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaattctta-----tcgaatcgagctcagacaggtttgactcgactc 306  Q
    |||| |||        ||||||||||||||||||||||||||| | | |||||||||||||     ||||||||||||| |||||||| ||||||||||    
T  34724063 tcgagcttaaaaaaaggttcgcttcgaactcgagtcgagtttcgaactgaaccaattcttatcgagtcgaatcgagctcggacaggttcgactcgactc 34724161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 14 - 310
Target Start/End: Complemental strand, 39407312 - 39406995
Alignment:
Q  14 gagaagtgcatctcaattataatgtaaaagctatacatgtagtatatggattgtgctgcagtagtaatgtacgcttcatagttttac------------t 101  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||            |    
T  39407312 gagaagtgcatcttaattataatgtaaaagctatacatgtagtatatggattgtgctgcagtagtgatttacgcttcatagttttacttattttttttat 39407213  T
Q  102 ttttatttttaaatatgtcaaatatttttgac----nnnnnnnnnggtttgtgaaatatacaattcaagtaaacgagctgaaccgaactgttcttgaact 197  Q
    |||| |||||||||||||||||||||||||||             ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  39407212 ttttttttttaaatatgtcaaatatttttgacaaaaaaaaaaaaaggtttgtgaaatatacaattcgagtaaacgagctgaaccgaactgttcgtgaact 39407113  T
Q  198 ttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaattctta-----tcgaatcgagctcagacag 292  Q
    ||||||||| ||||||||| |||        |||| |||||||||||||||||||||| | |||||||||||||||     ||||||| ||||| |||||    
T  39407112 ttaaacgagccgaactcgagcttaaaaaaaagttcacttcgaactcgagtcgagtttcgaaccgaaccaattcttatcgagtcgaatcaagctcggacag 39407013  T
Q  293 gtttgactcgactcattt 310  Q
    ||  ||||||||||||||    
T  39407012 gtacgactcgactcattt 39406995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 229 - 306
Target Start/End: Complemental strand, 10493474 - 10493397
Alignment:
Q  229 gttcgcttcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagctcagacaggtttgactcgactc 306  Q
    ||||| ||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||| || |||||||    
T  10493474 gttcgtttcgaactcgagtcgagtttcgagccgaaccatttcttatcgagtcgagctcagacaggttcgattcgactc 10493397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 321
Target Start/End: Complemental strand, 27195574 - 27195426
Alignment:
Q  178 aaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaattcttat--- 274  Q
    |||||| |||||| ||||||||||||||| |||||||||  |         ||||| ||| ||||||||| ||||||| ||||||||||||||||||       
T  27195574 aaccgagctgttcgtgaactttaaacgagccgaactcgagttagagaaaaggttcgtttcaaactcgagtagagtttcgagccgaaccaattcttattga 27195475  T
Q  275 --cgaatcgagctcagacaggtttgactcgactcatttcctgccctaat 321  Q
      ||| ||||||||||||| ||| |||||||||||||||| ||||||||    
T  27195474 gtcgagtcgagctcagacatgttcgactcgactcatttccagccctaat 27195426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 284
Target Start/End: Complemental strand, 18879780 - 18879665
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaat 268  Q
    ||||||| |||||||||||||| ||||||||||| ||| ||||||||| ||         |||||  ||||||||||| | |||||| ||||||||||||    
T  18879780 aacgagccgaaccgaactgttcgtgaactttaaatgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccaagtttcgagccgaaccaat 18879681  T
Q  269 tcttatcgaatcgagc 284  Q
    ||||||||| ||||||    
T  18879680 tcttatcgagtcgagc 18879665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 284
Target Start/End: Original strand, 32157365 - 32157480
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaat 268  Q
    ||||||| ||||||||||| || ||||||||||||||| ||||||||| ||         |||||  ||||||||||| | |||||| ||||||||||||    
T  32157365 aacgagccgaaccgaactggtcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccaagtttcgagccgaaccaat 32157464  T
Q  269 tcttatcgaatcgagc 284  Q
    ||||||||| ||||||    
T  32157465 tcttatcgagtcgagc 32157480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 229 - 321
Target Start/End: Original strand, 4984005 - 4984102
Alignment:
Q  229 gttcgcttcgaactcgagtcgagtttcaagccgaaccaattcttatcgaat-----cgagctcagacaggtttgactcgactcatttcctgccctaat 321  Q
    ||||| || |||||||||||||||||||||| ||||||||||||||||| |     |||||||||||| |||  |||||||| |||||| ||||||||    
T  4984005 gttcgttttgaactcgagtcgagtttcaagctgaaccaattcttatcgagtcgagccgagctcagacaagttcaactcgacttatttccagccctaat 4984102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 229 - 306
Target Start/End: Complemental strand, 41782794 - 41782717
Alignment:
Q  229 gttcgcttcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagctcagacaggtttgactcgactc 306  Q
    ||||| || |||||||||||||||||| ||||||||||||||||||| || |||||||| |||  || ||||||||||    
T  41782794 gttcgttttgaactcgagtcgagtttcgagccgaaccaattcttatcaaaccgagctcaaacaaattcgactcgactc 41782717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 317
Target Start/End: Original strand, 1841024 - 1841115
Alignment:
Q  236 tcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgag-----ctcagacaggtttg-----actcgactcatttcctgccc 317  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||     ||||||||||||||     ||||||||||||||| ||||    
T  1841024 tcgaactcgagtcgagtttcgagccgaaccaattcttatcgagtcgagtcgagctcagacaggtttggttcgactcgactcatttccagccc 1841115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 284
Target Start/End: Original strand, 11136703 - 11136758
Alignment:
Q  229 gttcgcttcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagc 284  Q
    ||||| || |||||||||||||||||| ||||||||| ||||||||||||||||||    
T  11136703 gttcgttttgaactcgagtcgagtttcgagccgaacctattcttatcgaatcgagc 11136758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 229 - 306
Target Start/End: Complemental strand, 26217523 - 26217441
Alignment:
Q  229 gttcgcttcgaactcgagtcgagtttcaagccgaaccaattctta-----tcgaatcgagctcagacaggtttgactcgactc 306  Q
    ||||| || |||||||||||||||||| |||||||||||||||||     ||||| |||||||||||| ||| ||||||||||    
T  26217523 gttcgttttgaactcgagtcgagtttcgagccgaaccaattcttattgagtcgaaccgagctcagacaagttcgactcgactc 26217441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 284
Target Start/End: Original strand, 3805420 - 3805468
Alignment:
Q  236 tcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagc 284  Q
    ||||||||||| |||||||| ||||||||||||||||||||| ||||||    
T  3805420 tcgaactcgagccgagtttcgagccgaaccaattcttatcgagtcgagc 3805468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 239 - 303
Target Start/End: Complemental strand, 28242475 - 28242411
Alignment:
Q  239 aactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagctcagacaggtttgactcga 303  Q
    ||||||| ||||||||| |||| |||||||||||||| |||| |||||||||| |||||| ||||    
T  28242475 aactcgattcgagtttcgagccaaaccaattcttatctaatcaagctcagacatgtttgattcga 28242411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 312
Target Start/End: Complemental strand, 39413437 - 39413361
Alignment:
Q  236 tcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagctcagacaggtttgactcgactcatttcc 312  Q
    ||||| ||||||||||||| ||||  ||| |||| ||||||| ||||||||| ||  ||||||||||||||||||||    
T  39413437 tcgaattcgagtcgagttttaagcgtaactaatttttatcgagtcgagctcatacgagtttgactcgactcatttcc 39413361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 22921591 - 22921544
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcga 216  Q
    ||||||| |||||||||||||| ||||||||||||||| |||||||||    
T  22921591 aacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcga 22921544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 284
Target Start/End: Complemental strand, 27905640 - 27905525
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaat 268  Q
    ||||||| |||||||||||||| ||||||||||||||| |||| |||  ||         |||||  ||||||||||| ||||||||  |||||||||||    
T  27905640 aacgagccgaaccgaactgttcgtgaactttaaacgagccgaattcgggctgaaaaaatagttcgtgtcgaactcgagccgagtttcgtgccgaaccaat 27905541  T
Q  269 tcttatcgaatcgagc 284  Q
    ||||||| | ||||||    
T  27905540 tcttatcaagtcgagc 27905525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 289
Target Start/End: Complemental strand, 28430642 - 28430589
Alignment:
Q  236 tcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagctcaga 289  Q
    |||||||||||||||||||  ||| |||| |||||||||||| |||||||||||    
T  28430642 tcgaactcgagtcgagttttgagctgaactaattcttatcgagtcgagctcaga 28430589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 284
Target Start/End: Complemental strand, 43385891 - 43385843
Alignment:
Q  236 tcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagc 284  Q
    ||||||||||| |||||||| ||| ||||||||||||||||| ||||||    
T  43385891 tcgaactcgagccgagtttcgagctgaaccaattcttatcgagtcgagc 43385843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 1224724 - 1224677
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcga 216  Q
    ||||||| |||||||||||||| ||||| ||||||||| |||||||||    
T  1224724 aacgagccgaaccgaactgttcgtgaaccttaaacgagtcgaactcga 1224677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 241 - 284
Target Start/End: Original strand, 14501398 - 14501441
Alignment:
Q  241 ctcgagtcgagtttcaagccgaaccaattcttatcgaatcgagc 284  Q
    ||||||||||||||| ||||||||| ||||||||||| ||||||    
T  14501398 ctcgagtcgagtttcgagccgaaccgattcttatcgagtcgagc 14501441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 283
Target Start/End: Original strand, 19283631 - 19283678
Alignment:
Q  236 tcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgag 283  Q
    |||||||||||||||||||| |||  |||||||||||||||| |||||    
T  19283631 tcgaactcgagtcgagtttcgagctaaaccaattcttatcgagtcgag 19283678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 29322211 - 29322164
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcga 216  Q
    ||||||| ||||||||| |||| ||||||||||||||| |||||||||    
T  29322211 aacgagccgaaccgaacagttcgtgaactttaaacgagccgaactcga 29322164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 38523237 - 38523284
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcga 216  Q
    ||||||| ||||| |||||||| ||||||||||||||| |||||||||    
T  38523237 aacgagccgaaccaaactgttcgtgaactttaaacgagccgaactcga 38523284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 282
Target Start/End: Original strand, 5385072 - 5385182
Alignment:
Q  172 gagctgaaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaattct 271  Q
    |||| |||||||| ||||| ||||||||||||||| ||||||||| ||         |||||  | ||||||||||| |||||| |||||||| |||| |    
T  5385072 gagccgaaccgaattgttcgtgaactttaaacgagtcgaactcgagctaaaaaaagagttcgtgttgaactcgagtcaagtttcgagccgaacaaatttt 5385171  T
Q  272 tatcgaatcga 282  Q
     ||||||||||    
T  5385172 aatcgaatcga 5385182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 283
Target Start/End: Complemental strand, 15932028 - 15931983
Alignment:
Q  238 gaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgag 283  Q
    ||||||||  |||||||||||| ||||||||||||||||| |||||    
T  15932028 gaactcgaaccgagtttcaagctgaaccaattcttatcgagtcgag 15931983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 15932095 - 15932050
Alignment:
Q  171 cgagctgaaccgaactgttcttgaactttaaacgagacgaactcga 216  Q
    ||||| |||||||||||||| ||||||||||||||  |||||||||    
T  15932095 cgagccgaaccgaactgttcgtgaactttaaacgaaccgaactcga 15932050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 133; Significance: 4e-69; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 14 - 216
Target Start/End: Original strand, 38061410 - 38061617
Alignment:
Q  14 gagaagtgcatctcaattataatgtaaaagctatacatgtagtatatggattgtgctgcagtagtaatgtacgcttcatagttttactttttat-----t 108  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |     |    
T  38061410 gagaagtgcatctcaattataatgtaaaagctatacaaatagtatatggattgtgctgcagtagtaatgtacgcttcatagttttactttttttttttgt 38061509  T
Q  109 tttaaatatgtcaaatatttttgacnnnnnnnnnggtttgtgaaatatacaattcaagtaaacgagctgaaccgaactgttcttgaactttaaacgagac 208  Q
    |||||||||||||||||||||||||         ||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||| |    
T  38061510 tttaaatatgtcaaatatttttgacaaaaaaaaaggtttgtgaaatatacaattcgagtaaacgagctgaaccgaactgttcgtgaattttaaacgagcc 38061609  T
Q  209 gaactcga 216  Q
    ||||||||    
T  38061610 gaactcga 38061617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 14 - 97
Target Start/End: Complemental strand, 7995089 - 7995006
Alignment:
Q  14 gagaagtgcatctcaattataatgtaaaagctatacatgtagtatatggattgtgctgcagtagtaatgtacgcttcatagttt 97  Q
    |||||||  |||||||||||||||| ||||||||| ||||||||||||||||||||| | ||||||||||||| ||||||||||    
T  7995089 gagaagtatatctcaattataatgtcaaagctatatatgtagtatatggattgtgctacggtagtaatgtacgtttcatagttt 7995006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 169 - 284
Target Start/End: Original strand, 37441793 - 37441908
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaat 268  Q
    ||||||| |||||||||||||| ||||||||||||||| ||||||||| ||         |||||  ||||||||||| |||||||| ||||||||||||    
T  37441793 aacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccgaaccaat 37441892  T
Q  269 tcttatcgaatcgagc 284  Q
    ||||||||| ||||||    
T  37441893 tcttatcgagtcgagc 37441908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 306
Target Start/End: Complemental strand, 24575460 - 24575318
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaat 268  Q
    ||||||| |||||||  ||||| ||||||||||||||| |||||||||  |         ||||| ||| ||||||||||||||||| ||||||||||||    
T  24575460 aacgagccgaaccgagttgttcgtgaactttaaacgagccgaactcgagttaaaaaaaaagttcgtttcaaactcgagtcgagtttcgagccgaaccaat 24575361  T
Q  269 tcttatcg-----aatcgagctcagacaggtttgactcgactc 306  Q
    ||||||||     ||||||||||||||||||| ||||||||||    
T  24575360 tcttatcgattcaaatcgagctcagacaggttcgactcgactc 24575318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 169 - 306
Target Start/End: Original strand, 43090012 - 43090149
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaat 268  Q
    ||||||| |||||||  || || ||||||||||||||| ||||||||| |         |||||| || |||||||||||||||||| ||||||||||||    
T  43090012 aacgagccgaaccgagttgctcgtgaactttaaacgagccgaactcgagcccaaaaaaatgttcgttttgaactcgagtcgagtttcgagccgaaccaat 43090111  T
Q  269 tcttatcgaatcgagctcagacaggtttgactcgactc 306  Q
    |||| ||||  |||||||||||| ||| ||||||||||    
T  43090112 tcttgtcgagccgagctcagacaagttcgactcgactc 43090149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 229 - 306
Target Start/End: Original strand, 5205150 - 5205232
Alignment:
Q  229 gttcgcttcgaactcgagtcgagtttcaagccgaaccaattctta-----tcgaatcgagctcagacaggtttgactcgactc 306  Q
    ||||| ||| ||||||||||||||||| |||||||||||||||||     |||||||||||||||||||||| ||||||||||    
T  5205150 gttcgtttcaaactcgagtcgagtttcgagccgaaccaattcttatggagtcgaatcgagctcagacaggttcgactcgactc 5205232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 229 - 306
Target Start/End: Original strand, 38061659 - 38061741
Alignment:
Q  229 gttcgcttcgaactcgagtcgagtttcaagccgaaccaattctta-----tcgaatcgagctcagacaggtttgactcgactc 306  Q
    |||||||||||||||||||||| |||  |||||||||||||||||     |||||||||||||||||||||| ||||||||||    
T  38061659 gttcgcttcgaactcgagtcgaattttgagccgaaccaattcttatcgagtcgaatcgagctcagacaggttcgactcgactc 38061741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 236 - 295
Target Start/End: Complemental strand, 44595917 - 44595858
Alignment:
Q  236 tcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagctcagacaggtt 295  Q
    |||||||| ||||||||||| | ||||||||||||||||||| |||||||||||||||||    
T  44595917 tcgaactcaagtcgagtttcgaaccgaaccaattcttatcgagtcgagctcagacaggtt 44595858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 284
Target Start/End: Complemental strand, 32179493 - 32179378
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaat 268  Q
    ||||||| |||||||||||||| |||| |||||||||| ||||||||| ||         |||||  || ||||| || |||||||| ||||||||||||    
T  32179493 aacgagccgaaccgaactgttcgtgaattttaaacgagccgaactcgagctgaaaaaatagttcgtgtcaaactcaagccgagtttcgagccgaaccaat 32179394  T
Q  269 tcttatcgaatcgagc 284  Q
    ||||||||||||||||    
T  32179393 tcttatcgaatcgagc 32179378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 284
Target Start/End: Complemental strand, 36418680 - 36418565
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaat 268  Q
    ||||||| |||||||||||||| ||||||||||||||  ||||||||| ||          ||||  ||||||||||| |||||||| ||||||||||||    
T  36418680 aacgagccgaaccgaactgttcgtgaactttaaacgaaccgaactcgagctgaaaaaataattcgtgtcgaactcgagccgagtttcgagccgaaccaat 36418581  T
Q  269 tcttatcgaatcgagc 284  Q
    ||||||||| ||||||    
T  36418580 tcttatcgagtcgagc 36418565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 319
Target Start/End: Original strand, 15257844 - 15257981
Alignment:
Q  187 gttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatc-----g 281  Q
    |||| ||||||||||||||| ||||||||| ||         ||||| |||||||||||  |||||||| ||||||||||||||||||||| ||     |    
T  15257844 gttcgtgaactttaaacgagccgaactcgagctagaaaaatggttcgtttcgaactcgaaccgagtttcgagccgaaccaattcttatcgagtcgagttg 15257943  T
Q  282 agctcagacaggtttgactcgactcatttcctgcccta 319  Q
    ||||||||||| || |||||||||||||| | ||||||    
T  15257944 agctcagacagattcgactcgactcattttcagcccta 15257981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 228 - 306
Target Start/End: Complemental strand, 47982762 - 47982684
Alignment:
Q  228 tgttcgcttcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagctcagacaggtttgactcgactc 306  Q
    |||||| || |||||||||||||||||| | ||||||| |||||| | || ||||||| ||||||||| ||||||||||    
T  47982762 tgttcgttttgaactcgagtcgagtttcgaaccgaaccgattcttgttgagtcgagcttagacaggttcgactcgactc 47982684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 40160347 - 40160416
Alignment:
Q  250 agtttcaagccgaaccaattcttatcgaatcgagctcagacaggtttgactcgactcatttcctgcccta 319  Q
    |||||| || |||||||||||||||||| |||||||||||||  || |||||||||||||| | ||||||    
T  40160347 agtttcgagtcgaaccaattcttatcgagtcgagctcagacaaattcgactcgactcattttcagcccta 40160416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 312
Target Start/End: Complemental strand, 3577031 - 3576955
Alignment:
Q  236 tcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagctcagacaggtttgactcgactcatttcc 312  Q
    |||||||| | ||||||||| ||| ||||||||||||||| | ||||| | ||||| ||| ||||||||||||||||    
T  3577031 tcgaactcaaatcgagtttcgagctgaaccaattcttatcaagtcgagattagacaagttcgactcgactcatttcc 3576955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 229 - 312
Target Start/End: Complemental strand, 7994846 - 7994758
Alignment:
Q  229 gttcgcttcgaactcgagtcgagtttcaagccgaaccaattcttatc-----gaatcgagctcagacaggtttgactcgactcatttcc 312  Q
    ||||| ||||||||||||||||||||| ||| ||| |||||||||||     || |||| |||| ||||||| ||||||||||||||||    
T  7994846 gttcgtttcgaactcgagtcgagtttcgagctgaatcaattcttatcgagttgagtcgaactcaaacaggttcgactcgactcatttcc 7994758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 24470506 - 24470553
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcga 216  Q
    ||||||| |||||||||||||| ||||||||||||||| |||||||||    
T  24470506 aacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcga 24470553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 283
Target Start/End: Complemental strand, 28005827 - 28005781
Alignment:
Q  237 cgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgag 283  Q
    |||||| |||||||||||| ||||||||||||||||||||| |||||    
T  28005827 cgaacttgagtcgagtttcgagccgaaccaattcttatcgagtcgag 28005781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 306
Target Start/End: Original strand, 29678144 - 29678226
Alignment:
Q  229 gttcgcttcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgag-----ctcagacaggtttgactcgactc 306  Q
    ||||| |||||||| |||||||||||| |||||||||| |||||||||| |||||     |||||||||||| || |||||||    
T  29678144 gttcgtttcgaacttgagtcgagtttcgagccgaaccatttcttatcgagtcgagtcaagctcagacaggttcgattcgactc 29678226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 306
Target Start/End: Complemental strand, 7955748 - 7955667
Alignment:
Q  230 ttcgcttcgaactcgagtcgagtttcaagccgaaccaattctta-----tcgaatcgagctcagacaggtttgactcgactc 306  Q
    |||| |||||||||||  |||||||| |||||||||||||||||     |||| |||||||||||||| || ||||||||||    
T  7955748 ttcgtttcgaactcgaaccgagtttcgagccgaaccaattcttattgagtcgagtcgagctcagacagattcgactcgactc 7955667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 13645766 - 13645811
Alignment:
Q  239 aactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagc 284  Q
    ||||||||||||||||| ||||||||||||||| ||||| ||||||    
T  13645766 aactcgagtcgagtttcgagccgaaccaattctaatcgagtcgagc 13645811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 42936651 - 42936606
Alignment:
Q  175 ctgaaccgaactgttcttgaactttaaacgagacgaactcgaactt 220  Q
    ||||||| |||||||| ||||||||||||||| |||||||||||||    
T  42936651 ctgaaccaaactgttcgtgaactttaaacgagccgaactcgaactt 42936606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 326
Target Start/End: Complemental strand, 50445581 - 50445480
Alignment:
Q  230 ttcgcttcgaactcgagtcgagtttcaagccgaaccaattctta-----tcgaatcgagctcagacaggtttgactcgactcatttcctgccctaatcct 324  Q
    |||| |||||||| |||||||||||| ||| ||| |||||||||     |||||||||||||||||  ||| || |||||| |||||| |||||| ||||    
T  50445581 ttcggttcgaactagagtcgagtttcgagctgaatcaattcttaacgagtcgaatcgagctcagacgagttcgattcgacttatttccagccctattcct 50445482  T
Q  325 aa 326  Q
    ||    
T  50445481 aa 50445480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 283
Target Start/End: Original strand, 21681669 - 21681716
Alignment:
Q  236 tcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgag 283  Q
    ||||||||||| ||||||| |||| ||||||||||||||||| |||||    
T  21681669 tcgaactcgagccgagttttaagctgaaccaattcttatcgagtcgag 21681716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 310
Target Start/End: Complemental strand, 31868982 - 31868903
Alignment:
Q  236 tcgaactcgagtcgagtttcaagccgaaccaattctta-----tcgaatcgagctcagacaggtttgactcgactcattt 310  Q
    |||||||||||||||||||| ||||||  |||||||||     ||||  |||||||||||  ||||||||||||||||||    
T  31868982 tcgaactcgagtcgagtttcgagccgagtcaattcttattgagtcgagccgagctcagacgagtttgactcgactcattt 31868903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 283
Target Start/End: Original strand, 45654414 - 45654461
Alignment:
Q  236 tcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgag 283  Q
    ||||||||||| ||| |||||||| ||||||||||||||||| |||||    
T  45654414 tcgaactcgagccgaatttcaagctgaaccaattcttatcgagtcgag 45654461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 283
Target Start/End: Complemental strand, 7840839 - 7840786
Alignment:
Q  229 gttcgcttcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgag 283  Q
    ||||| |||||||||||||||| |||| ||||||||||||||||| ||| |||||    
T  7840839 gttcggttcgaactcgagtcga-tttcgagccgaaccaattcttaacgagtcgag 7840786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 277
Target Start/End: Original strand, 47603463 - 47603497
Alignment:
Q  243 cgagtcgagtttcaagccgaaccaattcttatcga 277  Q
    ||||||||||||| |||||||||||||||||||||    
T  47603463 cgagtcgagtttcgagccgaaccaattcttatcga 47603497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 35309099 - 35309055
Alignment:
Q  238 gaactcgagtcgagtttcaagccgaaccaattcttatcgaatcga 282  Q
    ||||||||  |||||||| ||||||||||||||||||||| ||||    
T  35309099 gaactcgaaccgagtttcgagccgaaccaattcttatcgagtcga 35309055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 8e-43; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 68 - 311
Target Start/End: Complemental strand, 1803433 - 1803180
Alignment:
Q  68 gctgcagtagtaatgtacgcttcatagttttactttttattttt----aaatatgtcaaatatttttgacnnnnnnnnn-ggtttgtgaaatatacaatt 162  Q
    ||||||||||| |||||||||||||| |||||||||||||||||    |||||||| |||||||||||||          ||||||||||||||||||||    
T  1803433 gctgcagtagtgatgtacgcttcataattttactttttattttttttaaaatatgttaaatatttttgacaaaaaaaaaaggtttgtgaaatatacaatt 1803334  T
Q  163 caagtaaacgagctgaaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccga 262  Q
    | |||||||||||||||||||||| ||  ||||||||||||||  ||||||||| |||        |||||||||||||||||||| |||||| | ||||    
T  1803333 cgagtaaacgagctgaaccgaactcttagtgaactttaaacgaaccgaactcgagcttaaaaaaaggttcgcttcgaactcgagtcaagtttcgaaccga 1803234  T
Q  263 accaattctt-----atcgaatcgagctcagacaggtttgactcgactcatttc 311  Q
    ||||||| ||     |||||||||| ||||||||||||  ||||||||||||||    
T  1803233 accaatttttatcgaatcgaatcgaactcagacaggttcaactcgactcatttc 1803180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 229 - 320
Target Start/End: Complemental strand, 44377705 - 44377614
Alignment:
Q  229 gttcgcttcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagctcagacaggtttgactcgactcatttcctgccctaa 320  Q
    ||||| ||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||    
T  44377705 gttcgtttcaaactcgagtcgagtttcgagccgaaccaattcttatcgagtcgagctcagacaggttcgactcgactcatttccagccctaa 44377614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 169 - 284
Target Start/End: Complemental strand, 49820538 - 49820423
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaat 268  Q
    ||||||| |||| ||||||||| ||||||||||||||| ||||||||| ||         |||||  |||||||||||||||||||| ||||||||||||    
T  49820538 aacgagccgaactgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagtcgagtttcgagccgaaccaat 49820439  T
Q  269 tcttatcgaatcgagc 284  Q
    ||||||||| ||||||    
T  49820438 tcttatcgagtcgagc 49820423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 239 - 319
Target Start/End: Original strand, 16743169 - 16743249
Alignment:
Q  239 aactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagctcagacaggtttgactcgactcatttcctgcccta 319  Q
    |||| |||||||||||| ||||||||||||||||||||| ||||||||||||| ||| |||| ||| ||||||| ||||||    
T  16743169 aacttgagtcgagtttcgagccgaaccaattcttatcgagtcgagctcagacaagttcgacttgacacatttccagcccta 16743249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 239 - 312
Target Start/End: Original strand, 46945225 - 46945303
Alignment:
Q  239 aactcgagtcgagtttcaagccgaaccaattcttatc-----gaatcgagctcagacaggtttgactcgactcatttcc 312  Q
    ||||||||||||||||| |||||||||||||||||||     || ||||||||||||||||| ||||||||||||||||    
T  46945225 aactcgagtcgagtttcgagccgaaccaattcttatcgagttgagtcgagctcagacaggttcgactcgactcatttcc 46945303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 169 - 284
Target Start/End: Complemental strand, 50605615 - 50605500
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaat 268  Q
    ||||||| |||||||||||||| |||||||||||| || ||||||||| ||         |||||  ||||||||||| |||||||| ||||||||||||    
T  50605615 aacgagccgaaccgaactgttcgtgaactttaaacaagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccgaaccaat 50605516  T
Q  269 tcttatcgaatcgagc 284  Q
    ||||||||| ||||||    
T  50605515 tcttatcgagtcgagc 50605500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 177 - 291
Target Start/End: Original strand, 28266732 - 28266846
Alignment:
Q  177 gaaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaattcttatcg 276  Q
    |||||||||||||| ||||||||||||||| ||||||||| ||         |||||  |||||||||||||||||||| |||||| | ||||||||||     
T  28266732 gaaccgaactgttcgtgaactttaaacgagtcgaactcgagctaaaaaaagagttcgtgtcgaactcgagtcgagtttcgagccgagcaaattcttatcc 28266831  T
Q  277 aatcgagctcagaca 291  Q
    | |||||||||||||    
T  28266832 agtcgagctcagaca 28266846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 169 - 277
Target Start/End: Complemental strand, 53369222 - 53369114
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaat 268  Q
    ||||||| ||||||||| |||| ||||||||||||||| ||||||||| ||         |||||  ||||||||||| |||||||| ||||||||||||    
T  53369222 aacgagccgaaccgaacagttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccgaaccaat 53369123  T
Q  269 tcttatcga 277  Q
    |||||||||    
T  53369122 tcttatcga 53369114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 284
Target Start/End: Complemental strand, 9469587 - 9469472
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaat 268  Q
    ||||||| ||| |||||||||| ||||||||||||||  ||||||||| ||         |||||  ||||||||||| |||||||| ||||||||||||    
T  9469587 aacgagccgaatcgaactgttcgtgaactttaaacgatccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccgaaccaat 9469488  T
Q  269 tcttatcgaatcgagc 284  Q
    ||||||||| ||||||    
T  9469487 tcttatcgagtcgagc 9469472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 284
Target Start/End: Complemental strand, 19850292 - 19850177
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaat 268  Q
    ||||||| |||||||||||||| ||||||||||||||| ||||||||| ||         |||||  ||||||||||| |||||||| ||||||||||||    
T  19850292 aacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccgaaccaat 19850193  T
Q  269 tcttatcgaatcgagc 284  Q
      ||||||| ||||||    
T  19850192 gtttatcgagtcgagc 19850177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 284
Target Start/End: Complemental strand, 48977164 - 48977049
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaat 268  Q
    ||||||| ||||| || ||||| |||| |||||||||| ||||||||| ||         |||||  ||||||||||| |||||||| ||||||||||||    
T  48977164 aacgagccgaaccaaattgttcgtgaattttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccgaaccaat 48977065  T
Q  269 tcttatcgaatcgagc 284  Q
    ||||||||||||||||    
T  48977064 tcttatcgaatcgagc 48977049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 312
Target Start/End: Original strand, 50711490 - 50711564
Alignment:
Q  238 gaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagctcagacaggtttgactcgactcatttcc 312  Q
    ||||||||  |||||||  ||||||||||||||||||||| |||||||||||||| || ||||||||| ||||||    
T  50711490 gaactcgaaccgagttttgagccgaaccaattcttatcgagtcgagctcagacagattcgactcgacttatttcc 50711564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 177 - 283
Target Start/End: Complemental strand, 43386686 - 43386580
Alignment:
Q  177 gaaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaattcttatcg 276  Q
    |||||||||||||| ||||||||||||||| |||| |||| ||         |||||  ||||||||||||||||||||||||||| | |||||||||||    
T  43386686 gaaccgaactgttcgtgaactttaaacgagtcgaattcgagctgaaaaaagagttcgtgtcgaactcgagtcgagtttcaagccgagcaaattcttatcg 43386587  T
Q  277 aatcgag 283  Q
    | |||||    
T  43386586 agtcgag 43386580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 177 - 283
Target Start/End: Complemental strand, 52813151 - 52813045
Alignment:
Q  177 gaaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaattcttatcg 276  Q
    |||||||||||||| ||||||||||||||| |||| |||| ||         |||||  ||||||||||||||||||||||||||| | |||||||||||    
T  52813151 gaaccgaactgttcgtgaactttaaacgaggcgaattcgagctgaaaaaagagttcgtgtcgaactcgagtcgagtttcaagccgagcaaattcttatcg 52813052  T
Q  277 aatcgag 283  Q
    | |||||    
T  52813051 agtcgag 52813045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 176 - 320
Target Start/End: Original strand, 24009417 - 24009566
Alignment:
Q  176 tgaaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaattcttatc 275  Q
    ||||||||||||||| |||||||||||||||  |||||||| ||         ||||| || |||||||||||| ||||| ||  |||||||||||||||    
T  24009417 tgaaccgaactgttcgtgaactttaaacgagcagaactcgagctaaaaaaaaggttcgttttgaactcgagtcgggtttcgagttgaaccaattcttatc 24009516  T
Q  276 gaa-----tcgagctcagacaggtttgactcgactcatttcctgccctaa 320  Q
    |||     ||||||||||| || || ||||||||| |||||| |||||||    
T  24009517 gaatcgtgtcgagctcagatagattcgactcgactaatttccagccctaa 24009566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 312
Target Start/End: Original strand, 51409094 - 51409242
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaat 268  Q
    ||||||| || ||||||||| | ||||||||||||||| ||||||||| ||         |||||  |||||||||| ||||||||| |||||||| |||    
T  51409094 aacgagccgagccgaactgtacgtgaactttaaacgagtcgaactcgagctaaaaaaatagttcgtgtcgaactcgaatcgagtttcgagccgaacaaat 51409193  T
Q  269 tctta-----tcgaatcgagctcagacaggtttgactcgactcatttcc 312  Q
    |||||     |||| ||||||||||||| ||| ||||||||| ||||||    
T  51409194 tcttatcgagtcgagtcgagctcagacaagttcgactcgacttatttcc 51409242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 36543454 - 36543407
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcga 216  Q
    ||||||| |||||||||||||| ||||||||||||||| |||||||||    
T  36543454 aacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcga 36543407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 44792773 - 44792820
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcga 216  Q
    ||||||| |||||||||||||| ||||||||||||||| |||||||||    
T  44792773 aacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcga 44792820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 284
Target Start/End: Complemental strand, 21436467 - 21436352
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaat 268  Q
    |||||||  ||||||||||||| ||||||||||||||| ||||||||| ||         || ||  ||||| ||||| |||||||| ||||||| ||||    
T  21436467 aacgagccaaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagtccgtgtcgaattcgagccgagtttcgagccgaatcaat 21436368  T
Q  269 tcttatcgaatcgagc 284  Q
    ||||||||| ||||||    
T  21436367 tcttatcgagtcgagc 21436352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 283
Target Start/End: Complemental strand, 51994183 - 51994129
Alignment:
Q  229 gttcgcttcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgag 283  Q
    ||||| ||||||||||||||||||||| ||| ||||||||||||| ||| |||||    
T  51994183 gttcggttcgaactcgagtcgagtttcgagctgaaccaattcttaacgagtcgag 51994129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 284
Target Start/End: Complemental strand, 52705683 - 52705638
Alignment:
Q  239 aactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagc 284  Q
    ||||||| ||||||||| ||||||||||||||||||||| ||||||    
T  52705683 aactcgaatcgagtttcgagccgaaccaattcttatcgagtcgagc 52705638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 7505513 - 7505469
Alignment:
Q  240 actcgagtcgagtttcaagccgaaccaattcttatcgaatcgagc 284  Q
    |||||||||||||||| ||||||| ||||||||||||| ||||||    
T  7505513 actcgagtcgagtttcgagccgaatcaattcttatcgagtcgagc 7505469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 322
Target Start/End: Original strand, 32398468 - 32398516
Alignment:
Q  274 tcgaatcgagctcagacaggtttgactcgactcatttcctgccctaatc 322  Q
    |||| ||||||||||||| ||| |||||||||||||||| |||||||||    
T  32398468 tcgagtcgagctcagacaagttcgactcgactcatttccagccctaatc 32398516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 283
Target Start/End: Original strand, 4275589 - 4275636
Alignment:
Q  236 tcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgag 283  Q
    ||||||||||| |||||||| ||| ||||||||||||||||| |||||    
T  4275589 tcgaactcgagccgagtttcgagctgaaccaattcttatcgagtcgag 4275636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 228 - 283
Target Start/End: Complemental strand, 25134034 - 25133979
Alignment:
Q  228 tgttcgcttcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgag 283  Q
    |||||| |||||||||||  || ||||| ||||||||||||||||||||| |||||    
T  25134034 tgttcgtttcgaactcgaaccgggtttcgagccgaaccaattcttatcgagtcgag 25133979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 45674452 - 45674405
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcga 216  Q
    ||||||| |||||||||| ||| ||||||||||||||| |||||||||    
T  45674452 aacgagccgaaccgaactattcgtgaactttaaacgagccgaactcga 45674405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 319
Target Start/End: Complemental strand, 38791130 - 38791072
Alignment:
Q  261 gaaccaattcttatcgaatcgagctcagacaggtttgactcgactcatttcctgcccta 319  Q
    ||||||||| ||||||| ||||||||| ||| ||| |||||||||||||| | ||||||    
T  38791130 gaaccaatttttatcgagtcgagctcaaacatgttcgactcgactcattttcagcccta 38791072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 284
Target Start/End: Complemental strand, 52813054 - 52813012
Alignment:
Q  242 tcgagtcgagtttcaagccgaaccaattcttatcgaatcgagc 284  Q
    ||||||||||||||||||||| | |||||||||||| ||||||    
T  52813054 tcgagtcgagtttcaagccgagcaaattcttatcgagtcgagc 52813012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 22183923 - 22183886
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgag 206  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  22183923 aacgagcggaaccgaactgttcgtgaactttaaacgag 22183886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 303
Target Start/End: Original strand, 9874603 - 9874667
Alignment:
Q  239 aactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagctcagacaggtttgactcga 303  Q
    ||||||||||||||||| | ||||   |||| ||||||| ||||||||||| | |||||||||||    
T  9874603 aactcgagtcgagtttcgaaccgatttaatttttatcgagtcgagctcagataagtttgactcga 9874667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 12790149 - 12790185
Alignment:
Q  180 ccgaactgttcttgaactttaaacgagacgaactcga 216  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  12790149 ccgaactgttcgtgaactttaaacgagccgaactcga 12790185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 277
Target Start/End: Complemental strand, 22720836 - 22720796
Alignment:
Q  237 cgaactcgagtcgagtttcaagccgaaccaattcttatcga 277  Q
    ||||||||  ||||||||| |||||||||||||||||||||    
T  22720836 cgaactcgtatcgagtttcgagccgaaccaattcttatcga 22720796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 49026199 - 49026108
Alignment:
Q  14 gagaagtgcatctcaattataatgtaaaagctatacatgtagtatatggattgtgctgcagtagtaatgtacgcttcatagttttacttttt 105  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||| | |||||||||||||||||| ||||||||||||||||||||    
T  49026199 gagaagtgcatctcaattatcatgtaaaagctatatatgtagtatatggactatgctgcagtagtaatgtatgcttcatagttttacttttt 49026108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 284
Target Start/End: Original strand, 39471059 - 39471174
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaat 268  Q
    ||||||| ||| |||||||||| |||||||||||||||  |||||||| ||         |||||  ||||||||||| |||||||| ||||||||||||    
T  39471059 aacgagccgaatcgaactgttcgtgaactttaaacgagctgaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccgaaccaat 39471158  T
Q  269 tcttatcgaatcgagc 284  Q
    ||||||||| ||||||    
T  39471159 tcttatcgagtcgagc 39471174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 185 - 306
Target Start/End: Complemental strand, 25253018 - 25252892
Alignment:
Q  185 ctgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatc---- 280  Q
    |||||| ||||||||||||||| ||||||||| |||        |||||  | |||||||||||||||||  ||||||||||||||||||||| ||        
T  25253018 ctgttcgtgaactttaaacgagccgaactcgagcttaacaaaaagttcgtattgaactcgagtcgagttttgagccgaaccaattcttatcgagtcgagt 25252919  T
Q  281 -gagctcagacaggtttgactcgactc 306  Q
     ||||||||||||||| ||||||||||    
T  25252918 tgagctcagacaggttcgactcgactc 25252892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 295
Target Start/End: Original strand, 9505888 - 9505947
Alignment:
Q  236 tcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagctcagacaggtt 295  Q
    |||||||||||| ||||||| ||||||| ||||||||||||| ||||| |||||||||||    
T  9505888 tcgaactcgagttgagtttcgagccgaatcaattcttatcgagtcgagttcagacaggtt 9505947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 306
Target Start/End: Complemental strand, 7834157 - 7834080
Alignment:
Q  229 gttcgcttcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagctcagacaggtttgactcgactc 306  Q
    ||||| ||| ||||||| | ||||||  ||| ||||||||||||||||| ||||| ||||||||||| ||||||||||    
T  7834157 gttcgtttcaaactcgaattgagttttgagctgaaccaattcttatcgagtcgagttcagacaggttcgactcgactc 7834080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 319
Target Start/End: Original strand, 30662813 - 30662898
Alignment:
Q  239 aactcgagtcgagtttcaagccgaaccaattcttatcga-----atcgagctcagacaggtttgactcgactcatttcctgcccta 319  Q
    ||||||||| ||||||| | ||||| |||||||||||||     ||||||||||||||||||  ||||||||||||||| ||||||    
T  30662813 aactcgagttgagtttcgaaccgaatcaattcttatcgagtcgaatcgagctcagacaggttcaactcgactcatttccagcccta 30662898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 285
Target Start/End: Complemental strand, 39133871 - 39133822
Alignment:
Q  236 tcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagct 285  Q
    ||||||||||| |||||||| ||||||||||||||||||||| |||||||    
T  39133871 tcgaactcgagccgagtttcgagccgaaccaattcttatcgagtcgagct 39133822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 317
Target Start/End: Complemental strand, 40942995 - 40942902
Alignment:
Q  229 gttcgcttcgaactcgagtcgagtttcaagccgaaccaattcttatc-----gaatcgagctcagacaggtttgactcgactcatttcctgccc 317  Q
    ||||| || ||||||||| |||||||| || ||||||||||||||||     || |||||||||||||| || |||||||||||||||| ||||    
T  40942995 gttcgttttgaactcgagccgagtttcgagtcgaaccaattcttatcgagttgagtcgagctcagacagattcgactcgactcatttccagccc 40942902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 229 - 277
Target Start/End: Complemental strand, 5418143 - 5418095
Alignment:
Q  229 gttcgcttcgaactcgagtcgagtttcaagccgaaccaattcttatcga 277  Q
    ||||| || |||||||||||||||||| |||||||||||||||||||||    
T  5418143 gttcgttttgaactcgagtcgagtttcgagccgaaccaattcttatcga 5418095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 284
Target Start/End: Original strand, 20407797 - 20407845
Alignment:
Q  236 tcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagc 284  Q
    |||||||||||||||||||| |||||||||||| |||||||| ||||||    
T  20407797 tcgaactcgagtcgagtttcgagccgaaccaatacttatcgagtcgagc 20407845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 289
Target Start/End: Original strand, 7521781 - 7521840
Alignment:
Q  230 ttcgcttcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagctcaga 289  Q
    |||| ||||||||||||||||||||| |||||||| |||| ||||||| || ||||||||    
T  7521781 ttcgtttcgaactcgagtcgagtttcgagccgaacgaatttttatcgagtctagctcaga 7521840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 32688719 - 32688672
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcga 216  Q
    ||||||| |||||||||||||| ||||||||||||||| |||||||||    
T  32688719 aacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcga 32688672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 33152104 - 33152181
Alignment:
Q  235 ttcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagctcagacaggtttgactcgactcatttcc 312  Q
    ||||||||| ||||||||||| |||||||| |||||  ||||| |||| ||| |||||||| || ||| |||||||||    
T  33152104 ttcgaactcaagtcgagtttcgagccgaacaaattcacatcgagtcgaactcggacaggttcgattcggctcatttcc 33152181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 45714263 - 45714219
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaact 213  Q
    ||||||||||||| |||||||| ||||||||||||||| ||||||    
T  45714263 aacgagctgaaccaaactgttcgtgaactttaaacgagtcgaact 45714219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 23206925 - 23206964
Alignment:
Q  177 gaaccgaactgttcttgaactttaaacgagacgaactcga 216  Q
    |||||||||||||| ||||||||||||||| |||||||||    
T  23206925 gaaccgaactgttcgtgaactttaaacgagccgaactcga 23206964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 295
Target Start/End: Original strand, 8086982 - 8087040
Alignment:
Q  237 cgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagctcagacaggtt 295  Q
    |||||| |||||||||||| ||| |||| || | ||||||| |||||||||||||||||    
T  8086982 cgaactagagtcgagtttcgagctgaacaaaattttatcgagtcgagctcagacaggtt 8087040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 283
Target Start/End: Complemental strand, 12710159 - 12710106
Alignment:
Q  229 gttcgcttcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgag 283  Q
    ||||| ||| ||||||||||||||||| ||||| ||||||||||||||| |||||    
T  12710159 gttcgtttcaaactcgagtcgagtttcgagccg-accaattcttatcgagtcgag 12710106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 283
Target Start/End: Original strand, 27040593 - 27040638
Alignment:
Q  238 gaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgag 283  Q
    |||||||||||||||||| ||||||||||| ||||| ||| |||||    
T  27040593 gaactcgagtcgagtttcgagccgaaccaaatcttaacgagtcgag 27040638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 277
Target Start/End: Complemental strand, 30740825 - 30740784
Alignment:
Q  236 tcgaactcgagtcgagtttcaagccgaaccaattcttatcga 277  Q
    |||||||||||||||||||| |||| ||||| ||||||||||    
T  30740825 tcgaactcgagtcgagtttcgagccaaaccatttcttatcga 30740784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 39943782 - 39943827
Alignment:
Q  239 aactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagc 284  Q
    |||||||| |||||||| ||| ||||||||||||||||| ||||||    
T  39943782 aactcgagccgagtttcgagctgaaccaattcttatcgagtcgagc 39943827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 213
Target Start/End: Original strand, 53530140 - 53530181
Alignment:
Q  172 gagctgaaccgaactgttcttgaactttaaacgagacgaact 213  Q
    |||||||||| |||||||| ||||||||||||||| ||||||    
T  53530140 gagctgaaccaaactgttcgtgaactttaaacgagccgaact 53530181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 284
Target Start/End: Original strand, 38644271 - 38644319
Alignment:
Q  236 tcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagc 284  Q
    |||||||||||||||||||  |||||||| |||||||||| | ||||||    
T  38644271 tcgaactcgagtcgagttttgagccgaacaaattcttatctagtcgagc 38644319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 319
Target Start/End: Complemental strand, 52934319 - 52934231
Alignment:
Q  236 tcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgag-----ctcagacaggtttgactcgactcatttcctgcccta 319  Q
    |||||||| ||||||||||| ||||||  ||||||||||||| |||||     ||||||  | || |||||||||||||||| ||||||    
T  52934319 tcgaactcaagtcgagtttcgagccgagtcaattcttatcgagtcgagtcgagctcagatggattcgactcgactcatttccagcccta 52934231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0444 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0444
Description:

Target: scaffold0444; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 229 - 320
Target Start/End: Original strand, 1453 - 1544
Alignment:
Q  229 gttcgcttcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagctcagacaggtttgactcgactcatttcctgccctaa 320  Q
    ||||| ||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||    
T  1453 gttcgtttcaaactcgagtcgagtttcgagccgaaccaattcttatcgagtcgagctcagacaggttcgactcgactcatttccagccctaa 1544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 236 - 311
Target Start/End: Complemental strand, 40675258 - 40675183
Alignment:
Q  236 tcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagctcagacaggtttgactcgactcatttc 311  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  40675258 tcgaactcgagtcgagtttcgagccgaaccaattcttatcgaatcgagctcagacaagttcgactcgactcatttc 40675183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 169 - 282
Target Start/End: Complemental strand, 12139526 - 12139413
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaat 268  Q
    ||||||||||||||||| |||| ||||||||||||||| ||||||||| ||         |||||  ||||||||||| |||||||| ||||||||||||    
T  12139526 aacgagctgaaccgaacagttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccgaaccaat 12139427  T
Q  269 tcttatcgaatcga 282  Q
    ||||||||| ||||    
T  12139426 tcttatcgagtcga 12139413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 169 - 284
Target Start/End: Complemental strand, 36538237 - 36538122
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaat 268  Q
    ||||||| |||||||||||||| ||||||||||||||| | ||||||| ||         |||||  ||||||||||| |||||||| ||||||||||||    
T  36538237 aacgagccgaaccgaactgttcgtgaactttaaacgagccaaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccgaaccaat 36538138  T
Q  269 tcttatcgaatcgagc 284  Q
    ||||||||| ||||||    
T  36538137 tcttatcgagtcgagc 36538122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 282
Target Start/End: Complemental strand, 41958707 - 41958594
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaat 268  Q
    ||||||| |||||||||||||| ||||||||||||||| ||||||||| ||         |||||  ||||||||||| |||||||| ||||||||||||    
T  41958707 aacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccgaaccaat 41958608  T
Q  269 tcttatcgaatcga 282  Q
    | ||||||| ||||    
T  41958607 ttttatcgagtcga 41958594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 284
Target Start/End: Complemental strand, 20986224 - 20986109
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaat 268  Q
    ||||||| |||| ||||||||| ||||||||||||||| ||||||||| ||         |||||  |||||||| || |||||||| ||||||||||||    
T  20986224 aacgagccgaacagaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcaagccgagtttcgagccgaaccaat 20986125  T
Q  269 tcttatcgaatcgagc 284  Q
    ||||||||| ||||||    
T  20986124 tcttatcgagtcgagc 20986109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 238 - 284
Target Start/End: Original strand, 2647649 - 2647695
Alignment:
Q  238 gaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagc 284  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||    
T  2647649 gaactcgagtcgagtttcgagccgaaccaattcttatcgagtcgagc 2647695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 27633302 - 27633255
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcga 216  Q
    ||||||| |||||||||||||| ||||||||||||||| |||||||||    
T  27633302 aacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcga 27633255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 277
Target Start/End: Original strand, 3409896 - 3409937
Alignment:
Q  236 tcgaactcgagtcgagtttcaagccgaaccaattcttatcga 277  Q
    ||||||||||||||||||||||||||| | ||||||||||||    
T  3409896 tcgaactcgagtcgagtttcaagccgagctaattcttatcga 3409937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 284
Target Start/End: Complemental strand, 26435860 - 26435812
Alignment:
Q  236 tcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagc 284  Q
    ||||||||||  |||||||| | ||||||||||||||||||||||||||    
T  26435860 tcgaactcgaaccgagtttcgaaccgaaccaattcttatcgaatcgagc 26435812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 33164544 - 33164588
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaact 213  Q
    ||||||| |||||||||||||| ||||||||||||||| ||||||    
T  33164544 aacgagccgaaccgaactgttcgtgaactttaaacgagccgaact 33164588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 34064281 - 34064241
Alignment:
Q  177 gaaccgaactgttcttgaactttaaacgagacgaactcgaa 217  Q
    |||||||||||||| ||||||||||||||| ||||||||||    
T  34064281 gaaccgaactgttcgtgaactttaaacgagccgaactcgaa 34064241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 33831038 - 33830991
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcga 216  Q
    ||||||| |||||||| ||||| ||||||||||||||| |||||||||    
T  33831038 aacgagccgaaccgaattgttcgtgaactttaaacgagccgaactcga 33830991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 20204376 - 20204418
Alignment:
Q  177 gaaccgaactgttcttgaactttaaacgagacgaactcgaact 219  Q
    ||||| |||||||| ||||||||||||||| ||||||||||||    
T  20204376 gaaccaaactgttcgtgaactttaaacgagccgaactcgaact 20204418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 277
Target Start/End: Complemental strand, 29804357 - 29804315
Alignment:
Q  235 ttcgaactcgagtcgagtttcaagccgaaccaattcttatcga 277  Q
    |||||||| |||||||||||| ||||||||||||| |||||||    
T  29804357 ttcgaacttgagtcgagtttcgagccgaaccaatttttatcga 29804315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 284
Target Start/End: Complemental strand, 18667219 - 18667170
Alignment:
Q  235 ttcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagc 284  Q
    |||||||||||||| |||||| ||||||| | ||||||||||| ||||||    
T  18667219 ttcgaactcgagtcaagtttcgagccgaagctattcttatcgagtcgagc 18667170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 40458433 - 40458372
Alignment:
Q  228 tgttcgcttcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagctcaga 289  Q
    |||||| ||||||||||||||||||||  ||||||| || ||||||| || || ||||||||    
T  40458433 tgttcgtttcgaactcgagtcgagttttgagccgaatcatttcttattgagtcaagctcaga 40458372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 284
Target Start/End: Original strand, 44741285 - 44741391
Alignment:
Q  178 aaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaattcttatcga 277  Q
    ||||||||||||| ||||||||||||||| |||| | || ||         |||||  |||||||||||||||||||| |||||| | |||||||||| |    
T  44741285 aaccgaactgttcgtgaactttaaacgagtcgaatttgagctgaaaaaagagttcgtgtcgaactcgagtcgagtttcgagccgagcaaattcttatcaa 44741384  T
Q  278 atcgagc 284  Q
     ||||||    
T  44741385 gtcgagc 44741391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 295
Target Start/End: Complemental strand, 30711533 - 30711497
Alignment:
Q  259 ccgaaccaattcttatcgaatcgagctcagacaggtt 295  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  30711533 ccgaaccaattcttaacgagtcgagctcagacaggtt 30711497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 284
Target Start/End: Complemental strand, 10346372 - 10346257
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaat 268  Q
    ||||||| |||||||||||||| ||||||||||||||| ||||||||| ||         |||||  ||||||||||| |||||||| ||||||||||||    
T  10346372 aacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccgaaccaat 10346273  T
Q  269 tcttatcgaatcgagc 284  Q
    ||||||||||||||||    
T  10346272 tcttatcgaatcgagc 10346257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 181 - 295
Target Start/End: Complemental strand, 12428191 - 12428077
Alignment:
Q  181 cgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatc 280  Q
    |||||||||| | ||||||||||||| ||||||||| |||        |||||  |||||||||||||||||||| ||||||| ||||||||||||| ||    
T  12428191 cgaactgttcgtaaactttaaacgagtcgaactcgagcttaacaaaaagttcgtatcgaactcgagtcgagtttcgagccgaatcaattcttatcgagtc 12428092  T
Q  281 gagctcagacaggtt 295  Q
    |||||||||||||||    
T  12428091 gagctcagacaggtt 12428077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 284
Target Start/End: Complemental strand, 7957214 - 7957099
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaat 268  Q
    ||||||| |||||||||||||| |||||||||||||||  |||||||| ||         |||||  | ||||||||| |||||||| ||||||||||||    
T  7957214 aacgagccgaaccgaactgttcgtgaactttaaacgagctgaactcgagctgaaaaaatagttcgtgttgaactcgagccgagtttcgagccgaaccaat 7957115  T
Q  269 tcttatcgaatcgagc 284  Q
    ||||||||| ||||||    
T  7957114 tcttatcgagtcgagc 7957099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 284
Target Start/End: Complemental strand, 18962003 - 18961890
Alignment:
Q  171 cgagctgaaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaattc 270  Q
    ||||| |||||||||||||| ||||||||||||||| ||||||||  ||         ||| |  ||||||||||| |||||||| ||||||||||||||    
T  18962003 cgagccgaaccgaactgttcgtgaactttaaacgagtcgaactcgggctgaaaaaatagtttgtgtcgaactcgagccgagtttcgagccgaaccaattc 18961904  T
Q  271 ttatcgaatcgagc 284  Q
    ||||||| ||||||    
T  18961903 ttatcgagtcgagc 18961890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 284
Target Start/End: Complemental strand, 33109932 - 33109877
Alignment:
Q  229 gttcgcttcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagc 284  Q
    ||||| || |||||||||||||||||| ||||||||||||||||||||| ||||||    
T  33109932 gttcgttttgaactcgagtcgagtttcgagccgaaccaattcttatcgagtcgagc 33109877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 26643958 - 26643896
Alignment:
Q  259 ccgaaccaattcttatcgaatcgagctcagacaggtttgactcgactcatttcctgccctaat 321  Q
    |||| |||||||||| ||| |||||| |||||||||| |||||||||||||||| ||||||||    
T  26643958 ccgagccaattcttaacgagtcgagcacagacaggttcgactcgactcatttccagccctaat 26643896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 26749924 - 26749862
Alignment:
Q  259 ccgaaccaattcttatcgaatcgagctcagacaggtttgactcgactcatttcctgccctaat 321  Q
    |||| |||||||||| ||| |||||| |||||||||| |||||||||||||||| ||||||||    
T  26749924 ccgagccaattcttaacgagtcgagcacagacaggttcgactcgactcatttccagccctaat 26749862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 311
Target Start/End: Original strand, 25181145 - 25181287
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaat 268  Q
    ||||||| ||| |||||||||  |||| |||||||||| ||||||||| |||        |||||  |||||||| ||  ||||||| ||| || | |||    
T  25181145 aacgagccgaatcgaactgtttgtgaattttaaacgagtcgaactcgagcttaaaaaagagttcgtgtcgaactcaagctgagtttcgagctgagcaaat 25181244  T
Q  269 tcttatcgaatcgagctcagacaggtttgactcgactcatttc 311  Q
    ||||| ||| |||||||||||||||||  ||||||||||||||    
T  25181245 tcttaacgagtcgagctcagacaggttcaactcgactcatttc 25181287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 6998707 - 6998660
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcga 216  Q
    ||||||| |||||||||||||| ||||||||||||||| |||||||||    
T  6998707 aacgagccgaaccgaactgttcgtgaactttaaacgagtcgaactcga 6998660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 277
Target Start/End: Complemental strand, 22295450 - 22295408
Alignment:
Q  235 ttcgaactcgagtcgagtttcaagccgaaccaattcttatcga 277  Q
    ||||||||||||||||||||| ||||||||||||||| |||||    
T  22295450 ttcgaactcgagtcgagtttcgagccgaaccaattctaatcga 22295408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 9463744 - 9463797
Alignment:
Q  238 gaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagctcagaca 291  Q
    |||||||||| ||||||||||| ||||||||||| ||||| | |||||||||||    
T  9463744 gaactcgagttgagtttcaagctgaaccaattctaatcgagttgagctcagaca 9463797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 284
Target Start/End: Complemental strand, 6998669 - 6998621
Alignment:
Q  236 tcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagc 284  Q
    |||||||||||||||||||| |||||| | |||||||||||| ||||||    
T  6998669 tcgaactcgagtcgagtttcgagccgagcaaattcttatcgagtcgagc 6998621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 472986 - 472939
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcga 216  Q
    ||||||||||| | |||||||| ||||||||||||||| |||||||||    
T  472986 aacgagctgaatcaaactgttcgtgaactttaaacgagtcgaactcga 472939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 283
Target Start/End: Original strand, 3082371 - 3082425
Alignment:
Q  229 gttcgcttcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgag 283  Q
    ||||| ||||||||| ||||||||||| |||| ||||| ||||||| ||||||||    
T  3082371 gttcgtttcgaactctagtcgagtttcgagcccaaccatttcttattgaatcgag 3082425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 306
Target Start/End: Complemental strand, 7436800 - 7436718
Alignment:
Q  229 gttcgcttcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgag-----ctcagacaggtttgactcgactc 306  Q
    ||||| ||| ||||||||| ||||||| |||||||||| |||||||||| |||||     |||||||||||| || |||||||    
T  7436800 gttcgtttcaaactcgagtggagtttcgagccgaaccatttcttatcgagtcgagtcgagctcagacaggttcgattcgactc 7436718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 312
Target Start/End: Complemental strand, 13311490 - 13311360
Alignment:
Q  187 gttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaattctta-----tcgaatcg 281  Q
    |||| ||||||||||||||| ||||||||| ||         ||||| |||||||||||  |||||||  || ||||||||||||||     |||| |||    
T  13311490 gttcgtgaactttaaacgagccgaactcgagctagaaaaaaggttcgtttcgaactcgaaccgagttttgagtcgaaccaattcttatcgagtcgagtcg 13311391  T
Q  282 agctcagacaggtttgactcgactcatttcc 312  Q
    |||||||||||  | ||||||||||||||||    
T  13311390 agctcagacagactcgactcgactcatttcc 13311360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 36471898 - 36471821
Alignment:
Q  235 ttcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagctcagacaggtttgactcgactcatttcc 312  Q
    |||||||| |||||||||||  ||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  36471898 ttcgaacttgagtcgagttttgagccgaatcaattcttatcgagtcgagctcagacaggttcgactcgactcatttcc 36471821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 229 - 312
Target Start/End: Complemental strand, 45054893 - 45054805
Alignment:
Q  229 gttcgcttcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcg-----agctcagacaggtttgactcgactcatttcc 312  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||| |||     |||||||||| ||| ||||||||||||||||    
T  45054893 gttcgttttgaactcgagtcgagtttcaagccgaaccaattcttatcgagtcgagccaagctcagacaagttcgactcgactcatttcc 45054805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 320
Target Start/End: Original strand, 18250634 - 18250782
Alignment:
Q  177 gaaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaattctta--- 273  Q
    |||||||||||||| ||||||||||||||| |||||||||  |         ||||| ||| |||||||||| |||||| |||||||||||||||||       
T  18250634 gaaccgaactgttcgtgaactttaaacgagccgaactcgagttagagaaaaggttcgtttcaaactcgagtcaagtttcgagccgaaccaattcttatcg 18250733  T
Q  274 --tcgaatcgagctcagacaggtttgactcgactcatttcctgccctaa 320  Q
      |||| ||||||||| ||| |||||||||||||| ||||| |||||||    
T  18250734 agtcgagtcgagctcaaacaagtttgactcgactcgtttccagccctaa 18250782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 312
Target Start/End: Original strand, 35544149 - 35544296
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaat 268  Q
    |||||||  |||||| |||||| ||||||||||||||| ||||||| || ||       |||| | ||| ||||| | ||||||||| ||||||||||||    
T  35544149 aacgagccaaaccgagctgttcgtgaactttaaacgagccgaactc-aagttagagaaatgtttgtttcaaactcaaatcgagtttcgagccgaaccaat 35544247  T
Q  269 tcttatcga-----atcgagctcagacaggtttgactcgactcatttcc 312  Q
    |||||||||     |||||||||||||| ||||||||||||||||||||    
T  35544248 tcttatcgagtcgaatcgagctcagacatgtttgactcgactcatttcc 35544296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 236 - 306
Target Start/End: Complemental strand, 22074654 - 22074584
Alignment:
Q  236 tcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagctcagacaggtttgactcgactc 306  Q
    |||||||||||||||||||| ||||||||||||||||||||| || |||||||| ||||| ||||| ||||    
T  22074654 tcgaactcgagtcgagtttcgagccgaaccaattcttatcgagtctagctcagataggttcgactcaactc 22074584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 169 - 284
Target Start/End: Original strand, 3931328 - 3931444
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnnt-gttcgcttcgaactcgagtcgagtttcaagccgaaccaa 267  Q
    ||||||| |||||||||||||| |||||||||||||||  |||||||| ||        | |||||  ||||||||||| |||||||| |||||||||||    
T  3931328 aacgagccgaaccgaactgttcgtgaactttaaacgagctgaactcgagctgaaaaaaatagttcgtgtcgaactcgagccgagtttcgagccgaaccaa 3931427  T
Q  268 ttcttatcgaatcgagc 284  Q
    |||||||||| ||||||    
T  3931428 ttcttatcgagtcgagc 3931444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 169 - 284
Target Start/End: Complemental strand, 37333858 - 37333742
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnnt-gttcgcttcgaactcgagtcgagtttcaagccgaaccaa 267  Q
    ||||||| |||||||||||||| ||||||||||||||| ||||||||| ||        | ||||   ||||||||||| |||||||| |||||||||||    
T  37333858 aacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaaatagttcatatcgaactcgagccgagtttcgagccgaaccaa 37333759  T
Q  268 ttcttatcgaatcgagc 284  Q
    |||||||||| ||||||    
T  37333758 ttcttatcgagtcgagc 37333742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 284
Target Start/End: Complemental strand, 42071672 - 42071565
Alignment:
Q  177 gaaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaattcttatcg 276  Q
    |||||||||||||| ||||||||||||||| ||||||||| ||         |||||  ||||||||||| |||||||| |||||||||||||||||| |    
T  42071672 gaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccgaaccaattcttattg 42071573  T
Q  277 aatcgagc 284  Q
    | ||||||    
T  42071572 agtcgagc 42071565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 178 - 284
Target Start/End: Complemental strand, 26215868 - 26215762
Alignment:
Q  178 aaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaattcttatcga 277  Q
    ||||||||||||| ||||||||||||||| |||||||||  |         |||||  ||||||||||| |||||||| |||||||||||||||||||||    
T  26215868 aaccgaactgttcgtgaactttaaacgagccgaactcgagttgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccgaaccaattcttatcga 26215769  T
Q  278 atcgagc 284  Q
     ||||||    
T  26215768 gtcgagc 26215762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 284
Target Start/End: Original strand, 7539633 - 7539746
Alignment:
Q  171 cgagctgaaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaattc 270  Q
    |||||||||||||||||||| | ||||||||||||| ||||||||| ||          ||||  ||||||||||| |||||||| ||| ||||||||||    
T  7539633 cgagctgaaccgaactgttcgtaaactttaaacgagccgaactcgagctgaaaaaaaaattcgagtcgaactcgagccgagtttcgagctgaaccaattc 7539732  T
Q  271 ttatcgaatcgagc 284  Q
    ||||||| ||||||    
T  7539733 ttatcgagtcgagc 7539746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 277
Target Start/End: Original strand, 666196 - 666304
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaat 268  Q
    ||||||| |||||||||||||| ||||||||||||||| |||||| || ||         ||| |  ||||||||||| |||||||| ||||||||||||    
T  666196 aacgagccgaaccgaactgttcgtgaactttaaacgagccgaacttgagctgaaaaaatagtttgtgtcgaactcgagccgagtttcgagccgaaccaat 666295  T
Q  269 tcttatcga 277  Q
    |||||||||    
T  666296 tcttatcga 666304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 28950285 - 28950332
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcga 216  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||    
T  28950285 aacgagctgaaccgaactgttcgtgaactttaaacgagccgaactcga 28950332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 169 - 284
Target Start/End: Complemental strand, 43052442 - 43052327
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaat 268  Q
    ||||||| |||| ||||||||| ||||||||||| ||| ||||||||| ||         |||||  ||||||||||| | |||||| ||||||||||||    
T  43052442 aacgagccgaactgaactgttcgtgaactttaaatgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccaagtttcgagccgaaccaat 43052343  T
Q  269 tcttatcgaatcgagc 284  Q
    ||||||||| ||||||    
T  43052342 tcttatcgagtcgagc 43052327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 306
Target Start/End: Original strand, 17026039 - 17026120
Alignment:
Q  230 ttcgcttcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcga-----gctcagacaggtttgactcgactc 306  Q
    |||| ||| ||||||||||||||||| ||||||||||||||||||||| ||||     ||||||||| ||| ||||||||||    
T  17026039 ttcgtttcaaactcgagtcgagtttcgagccgaaccaattcttatcgagtcgagtcgagctcagacaagttcgactcgactc 17026120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 306
Target Start/End: Complemental strand, 26719226 - 26719177
Alignment:
Q  257 agccgaaccaattcttatcgaatcgagctcagacaggtttgactcgactc 306  Q
    ||||||||||||||||||||| |||||||||||||| || ||||||||||    
T  26719226 agccgaaccaattcttatcgagtcgagctcagacagattcgactcgactc 26719177  T

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Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 284
Target Start/End: Complemental strand, 36926502 - 36926454
Alignment:
Q  236 tcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagc 284  Q
    ||||||||||| |||||||| ||||||||||||||||||||| ||||||    
T  36926502 tcgaactcgagccgagtttcgagccgaaccaattcttatcgagtcgagc 36926454  T

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Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 388575 - 388528
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcga 216  Q
    ||||||| |||||||||||||| ||||||||||||||| |||||||||    
T  388575 aacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcga 388528  T

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Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 15433777 - 15433730
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcga 216  Q
    ||||||| |||||||||||||| ||||||||||||||| |||||||||    
T  15433777 aacgagccgaaccgaactgttcatgaactttaaacgagccgaactcga 15433730  T

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Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 289
Target Start/End: Original strand, 33172195 - 33172237
Alignment:
Q  247 tcgagtttcaagccgaaccaattcttatcgaatcgagctcaga 289  Q
    ||||||||| |||||| ||||||||||||||||||||||||||    
T  33172195 tcgagtttcgagccgagccaattcttatcgaatcgagctcaga 33172237  T

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Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 284
Target Start/End: Complemental strand, 7443922 - 7443874
Alignment:
Q  236 tcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagc 284  Q
    ||||||||||| |||||||| | ||||||||||||||||||| ||||||    
T  7443922 tcgaactcgagccgagtttcgaaccgaaccaattcttatcgagtcgagc 7443874  T

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Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 306
Target Start/End: Original strand, 18740839 - 18740976
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaat 268  Q
    ||||||| |||||||  ||||| ||||||||||||||| |||||||||  ||         || | ||| |||||||||||||||   | ||||| ||||    
T  18740839 aacgagccgaaccgagttgttcgtgaactttaaacgagtcgaactcgagtttaaaaaaagatttgtttcaaactcgagtcgagttatgaaccgaatcaat 18740938  T
Q  269 tcttatcgaatcgagctcagacaggtttgactcgactc 306  Q
    ||||||||| ||||||| ||| ||||| ||||||||||    
T  18740939 tcttatcgagtcgagcttagagaggttcgactcgactc 18740976  T

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Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 5795494 - 5795533
Alignment:
Q  177 gaaccgaactgttcttgaactttaaacgagacgaactcga 216  Q
    |||||||||||||| ||||||||||||||| |||||||||    
T  5795494 gaaccgaactgttcgtgaactttaaacgagccgaactcga 5795533  T

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Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 283
Target Start/End: Original strand, 20259977 - 20260024
Alignment:
Q  236 tcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgag 283  Q
    ||||||||||| ||||||| |||| ||||||||||||||||| |||||    
T  20259977 tcgaactcgagccgagttttaagctgaaccaattcttatcgagtcgag 20260024  T

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Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 284
Target Start/End: Original strand, 222923 - 223038
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaat 268  Q
    ||||||| |||||||||||||| |||| |||||||||| | || |||| ||         |||||  |||||||||||||||||||| |||||| | |||    
T  222923 aacgagccgaaccgaactgttcgtgaattttaaacgagtcaaattcgagctgaaaaaagagttcgtgtcgaactcgagtcgagtttcgagccgagcaaat 223022  T
Q  269 tcttatcgaatcgagc 284  Q
    | ||||||| ||||||    
T  223023 ttttatcgagtcgagc 223038  T

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Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 284
Target Start/End: Original strand, 5776545 - 5776660
Alignment:
Q  169 aacgagctgaaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaat 268  Q
    ||||||| |||||||| ||||| |||| |||||||||| ||||||||| ||         ||||   ||||||||||| |||||||| ||| |||| |||    
T  5776545 aacgagccgaaccgaattgttcgtgaattttaaacgagccgaactcgagctgaaaaaatagttcttgtcgaactcgagccgagtttcgagctgaactaat 5776644  T
Q  269 tcttatcgaatcgagc 284  Q
    ||||||||| ||||||    
T  5776645 tcttatcgagtcgagc 5776660  T

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Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 306
Target Start/End: Complemental strand, 10618110 - 10618044
Alignment:
Q  240 actcgagtcgagtttcaagccgaaccaattcttatcgaatcgagctcagacaggtttgactcgactc 306  Q
    |||||||||||||||| | ||||||||||| ||||||| || |  ||||||||||| || |||||||    
T  10618110 actcgagtcgagtttcgaaccgaaccaatttttatcgagtccaattcagacaggttcgattcgactc 10618044  T

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Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 23236837 - 23236882
Alignment:
Q  244 gagtcgagtttcaagccgaaccaattcttatcgaatcgagctcaga 289  Q
    |||||||||||| |||||| | |||||||||||| |||||||||||    
T  23236837 gagtcgagtttcgagccgagctaattcttatcgagtcgagctcaga 23236882  T

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Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 285
Target Start/End: Complemental strand, 41449240 - 41449191
Alignment:
Q  236 tcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagct 285  Q
    ||||| ||||||||| |||| |||||| |||||||||||||| |||||||    
T  41449240 tcgaattcgagtcgaatttcgagccgagccaattcttatcgagtcgagct 41449191  T

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Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 321
Target Start/End: Complemental strand, 48633337 - 48633252
Alignment:
Q  236 tcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagctcagacaggtttgactcgactcatttcctgccctaat 321  Q
    |||||||||||| ||||||  ||| || |  |||| |||||| ||||||||||||  ||| ||||||||||||||||  |||||||    
T  48633337 tcgaactcgagttgagttttgagctgagctgattcatatcgagtcgagctcagacgagttcgactcgactcatttccaaccctaat 48633252  T

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Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 319
Target Start/End: Original strand, 33899664 - 33899740
Alignment:
Q  248 cgagtttcaagccgaaccaattcttatcgaatcgag-----ctcagacaggtttgactcgactcatttcctgcccta 319  Q
    |||||||| ||||||| ||||||||||||| |||||     || |||||| || |||||||||||||||| ||||||    
T  33899664 cgagtttcgagccgaatcaattcttatcgagtcgagtcgagctgagacagattcgactcgactcatttccagcccta 33899740  T

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Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 238 - 319
Target Start/End: Complemental strand, 43966973 - 43966887
Alignment:
Q  238 gaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagc-----tcagacaggtttgactcgactcatttcctgcccta 319  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||     ||||||| ||| |||||||||||||||| ||||||    
T  43966973 gaactcgagtcgagtttcgagccgaaccaattcttatcgagtcgagccgagttcagacaagttcgactcgactcatttccagcccta 43966887  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 239 - 306
Target Start/End: Complemental strand, 13784295 - 13784228
Alignment:
Q  239 aactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagctcagacaggtttgactcgactc 306  Q
    |||||||||| |||||  ||||||||||||| ||||||| ||||||||||||||||| ||||||||||    
T  13784295 aactcgagtcaagttttgagccgaaccaatttttatcgagtcgagctcagacaggttcgactcgactc 13784228  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 236 - 295
Target Start/End: Original strand, 22930896 - 22930955
Alignment:
Q  236 tcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagctcagacaggtt 295  Q
    ||||||||||| |||||||| ||||||||||||||||||||| ||||| |||||||||||    
T  22930896 tcgaactcgagccgagtttcgagccgaaccaattcttatcgagtcgagttcagacaggtt 22930955  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 236 - 312
Target Start/End: Original strand, 25731901 - 25731982
Alignment:
Q  236 tcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagctcagaca-----ggtttgactcgactcatttcc 312  Q
    ||||||| ||||||| |||| ||||||||||||||||||||| |||||||||||||     |||| ||||||||||||||||    
T  25731901 tcgaacttgagtcgactttcgagccgaaccaattcttatcgagtcgagctcagacaaattcggttcgactcgactcatttcc 25731982  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 277
Target Start/End: Complemental strand, 11161237 - 11161130
Alignment:
Q  170 acgagctgaaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaatt 269  Q
    |||| |||||||||||||||| |||||||||||||||  |||||||| ||         |||||   |||||||||| |||| ||| |||||||||||||    
T  11161237 acgaactgaaccgaactgttcgtgaactttaaacgagctgaactcgagctgaaaaaatagttcgtggcgaactcgagccgaggttcgagccgaaccaatt 11161138  T
Q  270 cttatcga 277  Q
    ||||||||    
T  11161137 cttatcga 11161130  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 283
Target Start/End: Complemental strand, 12377821 - 12377767
Alignment:
Q  229 gttcgcttcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgag 283  Q
    ||||| ||||||||||||||||||||| ||| ||||  |||||||||||||||||    
T  12377821 gttcgtttcgaactcgagtcgagtttcgagctgaacacattcttatcgaatcgag 12377767  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 277
Target Start/End: Original strand, 17865721 - 17865762
Alignment:
Q  236 tcgaactcgagtcgagtttcaagccgaaccaattcttatcga 277  Q
    |||||||||||||||||||| ||| |||||||||||||||||    
T  17865721 tcgaactcgagtcgagtttcgagctgaaccaattcttatcga 17865762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 319
Target Start/End: Complemental strand, 39477519 - 39477423
Alignment:
Q  228 tgttcgcttcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgag-----ctcagacaggtttgactcgactcatttcctgcccta 319  Q
    |||||| |||||| ||||| | |||||| |  |||||||||||||||||| |||||     ||||||||| || |||||||||||||||| ||||||    
T  39477519 tgttcgtttcgaattcgagccaagtttcgaatcgaaccaattcttatcgagtcgagtcgagctcagacagattcgactcgactcatttccagcccta 39477423  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 283
Target Start/End: Original strand, 9413311 - 9413358
Alignment:
Q  236 tcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgag 283  Q
    |||||||| ||||||||||| |||||||||| |||||||||| |||||    
T  9413311 tcgaactcaagtcgagtttcgagccgaaccatttcttatcgagtcgag 9413358  T

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Target: scaffold0746 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0746
Description:

Target: scaffold0746; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 238 - 306
Target Start/End: Original strand, 5335 - 5403
Alignment:
Q  238 gaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgagctcagacaggtttgactcgactc 306  Q
    ||||||||||||| |||| | |||||||||||||||||||||||||||||||||| ||||  |||||||    
T  5335 gaactcgagtcgactttcgaaccgaaccaattcttatcgaatcgagctcagacagatttggttcgactc 5403  T

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Target: scaffold0316 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 284
Target Start/End: Complemental strand, 18867 - 18755
Alignment:
Q  172 gagctgaaccgaactgttcttgaactttaaacgagacgaactcgaacttnnnnnnntgttcgcttcgaactcgagtcgagtttcaagccgaaccaattct 271  Q
    |||| |||||||||||||| ||||||||||||||| ||||||||| ||         |||||  ||||||||||  |||||||  |||||||||||||||    
T  18867 gagccgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgaaccgagttttgagccgaaccaattct 18768  T
Q  272 tatcgaatcgagc 284  Q
    |||||| ||||||    
T  18767 tatcgagtcgagc 18755  T

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Target: scaffold0658 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 283
Target Start/End: Original strand, 6440 - 6487
Alignment:
Q  236 tcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgag 283  Q
    ||||||||||| |||||||||| ||||||||||||||||||| |||||    
T  6440 tcgaactcgagccgagtttcaacccgaaccaattcttatcgagtcgag 6487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 283
Target Start/End: Complemental strand, 26593 - 26539
Alignment:
Q  229 gttcgcttcgaactcgagtcgagtttcaagccgaaccaattcttatcgaatcgag 283  Q
    ||||| |||||||||||||||| |||| ||| ||||||||||||||||| |||||    
T  26593 gttcgtttcgaactcgagtcgaatttcgagctgaaccaattcttatcgagtcgag 26539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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