View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3386_low_22 (Length: 309)
Name: NF3386_low_22
Description: NF3386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3386_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 14 - 287
Target Start/End: Complemental strand, 40097896 - 40097625
Alignment:
| Q |
14 |
ataataataaaaatgcctaaaaagataatggtcatttaactgtaatcgtaaggcatataacaacaccaaaacaatccgctnnnnnnntaataaataatga |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||| |
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| T |
40097896 |
ataataataaaaatgcctaaaaagataatggtcatttaactgtaatcgtaaggcatataacaacaacaaaacaatccgttaaaaaaataataaataatga |
40097797 |
T |
|
| Q |
114 |
tattagtagnnnnnnnnntatgacttgcacaaaacttcataacaatctgtaaggcatttttactgcttgaacaaaactgctaaataaatgatattagtnn |
213 |
Q |
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| T |
40097796 |
tattagtagaaaaaaaa--atgacttgcacaaaacttcataataatctgtaaggcatttttattgcttgaacaaaactgctaaagaaatgatattagtaa |
40097699 |
T |
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| Q |
214 |
nnnnntgacttgtgcaaggcatttttatattttatattttaatgatattgttcatattttactgattgcacaaa |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40097698 |
aaaaatgacttgtgcaaggcatttttatattttatattttaatgatattgttcatattttactgattgcacaaa |
40097625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 14 - 294
Target Start/End: Original strand, 1927665 - 1927943
Alignment:
| Q |
14 |
ataataataaaaatgcctaaaaagataatggtcatttaactgtaatcgtaaggcatataacaacaccaaaacaatccgctnnnnnnntaataaataatga |
113 |
Q |
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| T |
1927665 |
ataataataaaaatgcctaaaaagataatgatcatttaattgtaatcgtaaggcatataacaacaacaaaacaatccgctaaaaaaataataaataatga |
1927764 |
T |
|
| Q |
114 |
tattagtagnnnnnnnnntatgacttgcacaaaacttcataacaatctgtaaggcatttttactgcttgaacaaaactgctaaataaatgatattagtnn |
213 |
Q |
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| T |
1927765 |
tattagtagaaaaaaaa--atgacttgcacaaaacttcataacaatttgtaaggcatttttactgcttgaacaaaactgctgaagaaatgatattagtaa |
1927862 |
T |
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| Q |
214 |
nnnnntgacttgtgcaaggcatttttatattttatattttaatgatattgttcatattttactgattgcacaaaactttat |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
1927863 |
aaaaatgacttgtgcaaggcatttttatattttatattttaatgatattgttcatattttactgcttgcacaaaactttat |
1927943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 41 - 294
Target Start/End: Complemental strand, 30878628 - 30878375
Alignment:
| Q |
41 |
atggtcatttaactgtaatcgtaaggcatataacaacaccaaaacaatccgctnnnnnnntaataaataatgatattagtagnnnnnnnnntatgacttg |
140 |
Q |
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||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
30878628 |
atggtcatttaacagtaatcgtaaggcatataacaacaacaaaacaatccgctaaaaaaataataaataatgatattagtaggaaaaaaaaaatgacttg |
30878529 |
T |
|
| Q |
141 |
cacaaaacttcataacaatctgtaaggcatttttactgcttgaacaaaactgctaaataaatgatattagtnnnnnnntgacttgtgcaaggcattttta |
240 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
30878528 |
cacaaaacttcataacaatctgtaaggcatttttactgcttgaacaaaactgctaaagaaatgatattagtaaaaaaatgacttgtgcaaggcattttta |
30878429 |
T |
|
| Q |
241 |
tattttatattttaatgatattgttcatattttactgattgcacaaaactttat |
294 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30878428 |
tattttatattttaatgatattgttcatattttactgcttgcacaaaactttat |
30878375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 14 - 294
Target Start/End: Original strand, 34028216 - 34028496
Alignment:
| Q |
14 |
ataataataaaaatgcctaaaaagataatggtcatttaactgtaatcgtaaggcatataacaacaccaaaacaatccgctnnnnnnntaataaataatga |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
34028216 |
ataataataaaaatgcctaaaaagataatggtcatttaactgtaatcgtaaggcatataacaacaacaaaacaatccgctaaaaaaataataaataatga |
34028315 |
T |
|
| Q |
114 |
tattagtagnnnnnnnnntatgacttgcacaaaacttcataacaatctgtaaggcatttttactgcttgaacaaaactgctaaataaatgatattagt-n |
212 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||| |||| |
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| T |
34028316 |
tattagtagaaaaaaaaa-atgacttgcacaaaacttcataacaatctgtaagacatttttactgcttgaacaaaactgctaaagaaattatactagtaa |
34028414 |
T |
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| Q |
213 |
nnnnnntgacttgtgcaaggcatttttatattttatattttaatgatattgttcatattttactgattgcacaaaactttat |
294 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||| |
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| T |
34028415 |
aaaaaatgacttgtgcaaggcatttttatattttatatttgaatgataatgttcatattttactgcttgcacaaaactttat |
34028496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 14 - 294
Target Start/End: Original strand, 20157032 - 20157316
Alignment:
| Q |
14 |
ataataataaaaatgcctaaaaagataatggtcatttaactgtaatcgtaaggcatataacaacaccaaaacaatccgctnnnnnnntaataaataatga |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| | || ||||||||||||| |
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| T |
20157032 |
ataataataaaaatgcctaaaaagataatggtcatttaactgcaatcgtaaggcatataacaacaacaaaacaattcactaaaaaaataataaataatga |
20157131 |
T |
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| Q |
114 |
tattagtagnnnnnnnnntatgacttgcacaaaacttcataacaatctgtaaggca-----tttttactgcttgaacaaaactgctaaataaatgatatt |
208 |
Q |
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| T |
20157132 |
tattagtgggaaaaaaaa-atgacttgcacaaaacttcataataatctgtaaggcaaggcatttttactgcttgaacaaaactgctaaagaaatgatatt |
20157230 |
T |
|
| Q |
209 |
agtnnnnnnntgacttgtgcaaggcatttttatattttatattttaatgatattgttcatattttactgattgcacaaaactttat |
294 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20157231 |
agtaaaaaagtgacttgtgcaaggcatttttatattttatattttaatgatattgttcatattttactgattgcacaaaactttat |
20157316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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