View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3386_low_32 (Length: 243)

Name: NF3386_low_32
Description: NF3386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3386_low_32
NF3386_low_32
[»] chr1 (3 HSPs)
chr1 (71-242)||(40281786-40281957)
chr1 (1-75)||(40282750-40282822)
chr1 (78-166)||(40280307-40280395)


Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 71 - 242
Target Start/End: Complemental strand, 40281957 - 40281786
Alignment:
Q  71 gaattcatttcattgttatcattcattcagtgaaaatacaaaatgtaaaataaatgctctctgcaaattctaacagaatgagccaagagttcattcctta 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  40281957 gaattcatttcattgttatcattcattcagtgaaaatacaaaatgtaaaacagatgctctctgcaaattctaacagaatgagccaagagttcattcctta 40281858  T
Q  171 atatggtatctcaaagcccttctggatccatggagattatgccagcatcggatgctagtccatcttcatctc 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40281857 atatggtatctcaaagcccttctggatccatggagattatgccagcatcggatgctagtccatcttcttctc 40281786  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 40282822 - 40282750
Alignment:
Q  1 tctcagttagttaaactagtttgagattcagttacaatatagcttactttaaagatgatcctatataaaggaatt 75  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  40282822 tctcagttagttaaactagtttgagattcagttaca--atagcttactttaaagatgatcctatataaaggaatt 40282750  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 166
Target Start/End: Complemental strand, 40280395 - 40280307
Alignment:
Q  78 tttcattgttatcattcattcagtgaaaatacaaaatgtaaaataaatgctctctgcaaattctaacagaatgagccaagagttcattc 166  Q
    |||||||||  | |||||||  |||| |||||||||| ||||  |||  ||||||||||||||||||||||||| |||| |||||||||    
T  40280395 tttcattgtatttattcatttggtgacaatacaaaatctaaatcaaaatctctctgcaaattctaacagaatgaaccaatagttcattc 40280307  T

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