View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3386_low_35 (Length: 223)
Name: NF3386_low_35
Description: NF3386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3386_low_35 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 4e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 78 - 223
Target Start/End: Complemental strand, 40283168 - 40283023
Alignment:
| Q |
78 |
gttttaattatgacaatgatcaataataattgtataattttttaacagtgatgtggattgtatgattatttgagcaactgttgcatgagaacaaattctc |
177 |
Q |
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| T |
40283168 |
gttttaattatgacaatgatcaataataattgtataattttttaacagtgatgtggattgtatgattatttgagcaactgttgcatgagaacaaattctc |
40283069 |
T |
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| Q |
178 |
atgacattgattagaattatgaaaagttgataagacatagactctt |
223 |
Q |
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| T |
40283068 |
atgacattgattagaattatgaaaagttgataagacatagactctt |
40283023 |
T |
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Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 78 - 212
Target Start/End: Complemental strand, 40290591 - 40290451
Alignment:
| Q |
78 |
gttttaattatgacaatgatcaataataatt-----gtataattttttaacagtgatgtggattgtatgattattt-gagcaactgttgcatgagaacaa |
171 |
Q |
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| T |
40290591 |
gttttaattatgactacaatcaataataattttgttgtataatctttctacaatgatgtggattgtatgattattttgagaaagtgttgcacgagatcaa |
40290492 |
T |
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| Q |
172 |
attctcatgacattgattagaattatgaaaagttgataaga |
212 |
Q |
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| T |
40290491 |
attcacacgacattgatcggaattatgaaaagttgagaaga |
40290451 |
T |
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