View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3386_low_4 (Length: 570)

Name: NF3386_low_4
Description: NF3386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3386_low_4
NF3386_low_4
[»] chr7 (4 HSPs)
chr7 (18-304)||(5684034-5684320)
chr7 (18-304)||(5709084-5709370)
chr7 (356-555)||(5683785-5683984)
chr7 (356-555)||(5708835-5709034)
[»] chr4 (4 HSPs)
chr4 (19-52)||(24611963-24611996)
chr4 (15-57)||(478171-478213)
chr4 (25-55)||(40199789-40199819)
chr4 (14-62)||(7083977-7084025)
[»] chr2 (4 HSPs)
chr2 (14-62)||(12704598-12704646)
chr2 (15-57)||(12891258-12891300)
chr2 (14-52)||(22597054-22597092)
chr2 (15-52)||(9978832-9978869)
[»] chr5 (1 HSPs)
chr5 (14-53)||(17699473-17699512)
[»] chr3 (1 HSPs)
chr3 (15-57)||(13702152-13702194)
[»] chr1 (1 HSPs)
chr1 (14-52)||(20411484-20411522)


Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 304
Target Start/End: Complemental strand, 5684320 - 5684034
Alignment:
Q  18 tgacgactaaggtttaagaaggagagaagagagaggggaacaaagtttaatgaatacaacttcactcactcaaggagaaaattaatagaaccatacacgg 117  Q
    |||| |||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5684320 tgacaactagggtttaaaaaggagagaagagagaggggaagaaagtttaatgaatacaacttcagtcactcaaggagaaaattaatagaaccatacacgg 5684221  T
Q  118 atgaaattataatgaataaaaatggtcatccaaatgcatattccactatattaaaatcttaaataaaattaagaattggaaccaaaaatatagtttagtg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5684220 atgaaattataatgaataaaaatggtcatccaaatgcatattccactatattaaaatcttaaataaaattaagaattggaaccaaaaatatagcttagtg 5684121  T
Q  218 gagtactttatccctgtattgcccgtgtgagtgaggttgattaagtggatgattggtcaaaaatatcattagacagattttgacccc 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5684120 gagtactttatccctgtattgcccgtgtgagtgaggttgattaagtggatgattggtcaaaaatatcattagacagattttgacccc 5684034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 304
Target Start/End: Complemental strand, 5709370 - 5709084
Alignment:
Q  18 tgacgactaaggtttaagaaggagagaagagagaggggaacaaagtttaatgaatacaacttcactcactcaaggagaaaattaatagaaccatacacgg 117  Q
    |||| |||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5709370 tgacaactagggtttaaaaaggagagaagagagaggggaagaaagtttaatgaatacaacttcagtcactcaaggagaaaattaatagaaccatacacgg 5709271  T
Q  118 atgaaattataatgaataaaaatggtcatccaaatgcatattccactatattaaaatcttaaataaaattaagaattggaaccaaaaatatagtttagtg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5709270 atgaaattataatgaataaaaatggtcatccaaatgcatattccactatattaaaatcttaaataaaattaagaattggaaccaaaaatatagcttagtg 5709171  T
Q  218 gagtactttatccctgtattgcccgtgtgagtgaggttgattaagtggatgattggtcaaaaatatcattagacagattttgacccc 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5709170 gagtactttatccctgtattgcccgtgtgagtgaggttgattaagtggatgattggtcaaaaatatcattagacagattttgacccc 5709084  T

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Target: chr7; HSP #3
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 356 - 555
Target Start/End: Complemental strand, 5683984 - 5683785
Alignment:
Q  356 aatttgttggaatgatcataaaggtaatagtatataactatatatggtatgagacttatcttgatgtatatgtatcattgaccttttttgtacttgtgta 455  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5683984 aatttgttggaatgatcataaaggtaatagtatataactatatatggtatgagacttatcttgatgtatatgtatcattgaccttttttgtacttgtgta 5683885  T
Q  456 ctcatacattgtgctaattgtactacacattaatttggtgactatagtcaaaatgacaattaaccacttgaacagccaaagtttataatcatttgcaatt 555  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||    
T  5683884 ctcatacattgtgctaattgtactacacattaatttggtgactatagtcaaaatgataattaaccacttgaacaaccaaagtttataatcatttggaatt 5683785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 356 - 555
Target Start/End: Complemental strand, 5709034 - 5708835
Alignment:
Q  356 aatttgttggaatgatcataaaggtaatagtatataactatatatggtatgagacttatcttgatgtatatgtatcattgaccttttttgtacttgtgta 455  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5709034 aatttgttggaatgatcataaaggtaatagtatataactatatatggtatgagacttatcttgatgtatatgtatcattgaccttttttgtacttgtgta 5708935  T
Q  456 ctcatacattgtgctaattgtactacacattaatttggtgactatagtcaaaatgacaattaaccacttgaacagccaaagtttataatcatttgcaatt 555  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||    
T  5708934 ctcatacattgtgctaattgtactacacattaatttggtgactatagtcaaaatgataattaaccacttgaacaaccaaagtttataatcatttggaatt 5708835  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 24611963 - 24611996
Alignment:
Q  19 gacgactaaggtttaagaaggagagaagagagag 52  Q
    ||||||||||||||||||||||||||||||||||    
T  24611963 gacgactaaggtttaagaaggagagaagagagag 24611996  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 478171 - 478213
Alignment:
Q  15 gggtgacgactaaggtttaagaaggagagaagagagaggggaa 57  Q
    |||||||| ||| ||||| ||||||||||||||||||||||||    
T  478171 gggtgacggctagggtttgagaaggagagaagagagaggggaa 478213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 55
Target Start/End: Original strand, 40199789 - 40199819
Alignment:
Q  25 taaggtttaagaaggagagaagagagagggg 55  Q
    |||||||||||||||||||||||||||||||    
T  40199789 taaggtttaagaaggagagaagagagagggg 40199819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 7083977 - 7084025
Alignment:
Q  14 agggtgacgactaaggtttaagaaggagagaagagagaggggaacaaag 62  Q
    ||||||||||||| ||||| ||||||||| ||||||||| |||| ||||    
T  7083977 agggtgacgactagggtttgagaaggagaaaagagagagaggaagaaag 7084025  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 12704646 - 12704598
Alignment:
Q  14 agggtgacgactaaggtttaagaaggagagaagagagaggggaacaaag 62  Q
    ||||||||||||| ||||| ||||||||||||||||||| |||| ||||    
T  12704646 agggtgacgactagggtttgagaaggagagaagagagagaggaagaaag 12704598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 12891258 - 12891300
Alignment:
Q  15 gggtgacgactaaggtttaagaaggagagaagagagaggggaa 57  Q
    |||||||||||| ||||| ||||||||||||||||||| ||||    
T  12891258 gggtgacgactagggtttgagaaggagagaagagagagaggaa 12891300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 22597092 - 22597054
Alignment:
Q  14 agggtgacgactaaggtttaagaaggagagaagagagag 52  Q
    ||||||||||||| ||||| |||||||||||||||||||    
T  22597092 agggtgacgactagggtttgagaaggagagaagagagag 22597054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 9978832 - 9978869
Alignment:
Q  15 gggtgacgactaaggtttaagaaggagagaagagagag 52  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  9978832 gggtgacgactaaggtttgagaaagagagaagagagag 9978869  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 17699512 - 17699473
Alignment:
Q  14 agggtgacgactaaggtttaagaaggagagaagagagagg 53  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  17699512 agggtgacgactagggtttgagaaggagagaagagagagg 17699473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 13702152 - 13702194
Alignment:
Q  15 gggtgacgactaaggtttaagaaggagagaagagagaggggaa 57  Q
    |||||||| ||| ||||| ||||||||||||||||||||||||    
T  13702152 gggtgacggctatggtttgagaaggagagaagagagaggggaa 13702194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 20411522 - 20411484
Alignment:
Q  14 agggtgacgactaaggtttaagaaggagagaagagagag 52  Q
    ||||||||| ||||||||| |||||||||||||||||||    
T  20411522 agggtgacgtctaaggtttgagaaggagagaagagagag 20411484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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