View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3386_low_5 (Length: 548)
Name: NF3386_low_5
Description: NF3386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3386_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 20 - 538
Target Start/End: Original strand, 9336319 - 9336821
Alignment:
| Q |
20 |
ggtataagtatacgtgtcatgtattcattattgagggatatttggttaggatatatgcgatcatttattcaggaacattcnnnnnnnccttgaactgcaa |
119 |
Q |
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| T |
9336319 |
ggtataagtatatgtgtcatgtattcattgttgagggatatttggttaggatatatgcgatcatttattcaggaacattctttttttccttgaactgcaa |
9336418 |
T |
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| Q |
120 |
agattaataatagatcatatcgaaaatgagagtgagtacaagtaactcgttcatcaacattgttgtccagctggttttggtcttcactcttctgattaat |
219 |
Q |
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| T |
9336419 |
agattaataatagatcatatcgaaaatgagagtgagtacaagtaactcgttcatcaacattgttgtccagctggttttggtcttcactcttctgattaat |
9336518 |
T |
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| Q |
220 |
gttcttgtggctgtatatatatgtggttgggactgtgttggctttctcttcatgtgatattccttgtcacagtctttccaccacagtctttttgagaaaa |
319 |
Q |
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| T |
9336519 |
gttcttgtggctg--tatatatgtggttgggactgtcttggctttctcttcgtgtgatattccttgt--------------cacagtctttttgagaaaa |
9336602 |
T |
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| Q |
320 |
tgacctaacagattcaaagttctaactccacccaaatcaccgttaaaagcaaaaaccctacctaccaaaaactgagacattaaccgaattcaaggatgcg |
419 |
Q |
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| T |
9336603 |
tgacctaccagattcaaagttctaactccacccaaatcaccgttaaaagcaaaaaccctacctaccaaaaactgaaacattaaccgaattcaaggatgcg |
9336702 |
T |
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| Q |
420 |
aagatccttaggatcggtgatggatttacagatagaagccaaatcgatattcacttcacttcgcacctcccggttcgaatgaaaacgactatccttccat |
519 |
Q |
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| T |
9336703 |
agggtccttaggatcgatgatggatttacagatagaagccaaatcgatattcgcttcacttcgcacctcccagttcgaatgaaaaagactatccttccat |
9336802 |
T |
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| Q |
520 |
tctgataacattattcttc |
538 |
Q |
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| T |
9336803 |
tctgataacattattcttc |
9336821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 470
Target Start/End: Original strand, 8209356 - 8209426
Alignment:
| Q |
400 |
taaccgaattcaaggatgcgaagatccttaggatcggtgatggatttacagatagaagccaaatcgatatt |
470 |
Q |
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| T |
8209356 |
taaccgaattgacgaatgcgaggatcgttaggatcggtgatggagtgaaagagagaagctaaatcgatatt |
8209426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 400 - 485
Target Start/End: Original strand, 42365183 - 42365268
Alignment:
| Q |
400 |
taaccgaattcaaggatgcgaagatccttaggatcggtgatggatttacagatagaagccaaatcgatattcacttcacttcgcac |
485 |
Q |
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| T |
42365183 |
taaccgaattcacggatgcgagggtctttaggatcggtgattgagtcacagagagaagccagatcaatattggcttcatttcgcac |
42365268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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