View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3386_low_7 (Length: 527)

Name: NF3386_low_7
Description: NF3386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3386_low_7
NF3386_low_7
[»] chr4 (7 HSPs)
chr4 (285-509)||(35765787-35766011)
chr4 (291-337)||(13217018-13217064)
chr4 (147-188)||(35765659-35765700)
chr4 (288-337)||(27001072-27001121)
chr4 (147-186)||(53840092-53840131)
chr4 (147-179)||(13216889-13216921)
chr4 (147-179)||(24572237-24572269)
[»] chr7 (2 HSPs)
chr7 (458-496)||(48770145-48770183)
chr7 (422-492)||(48100813-48100883)
[»] chr6 (2 HSPs)
chr6 (291-337)||(6261056-6261102)
chr6 (422-496)||(23508919-23508993)
[»] chr2 (3 HSPs)
chr2 (422-492)||(11818516-11818586)
chr2 (447-496)||(11553349-11553398)
chr2 (287-337)||(3548107-3548157)
[»] chr1 (6 HSPs)
chr1 (295-337)||(13693848-13693890)
chr1 (422-491)||(13288084-13288153)
chr1 (422-492)||(4614887-4614957)
chr1 (422-496)||(5185341-5185415)
chr1 (422-492)||(24065210-24065280)
chr1 (423-492)||(41117187-41117256)
[»] chr5 (3 HSPs)
chr5 (147-186)||(11078996-11079035)
chr5 (441-496)||(36044933-36044988)
chr5 (292-337)||(34403842-34403887)
[»] chr3 (4 HSPs)
chr3 (290-337)||(17372813-17372860)
chr3 (291-333)||(43430279-43430321)
chr3 (305-338)||(39721811-39721844)
chr3 (291-339)||(30075438-30075486)
[»] chr8 (3 HSPs)
chr8 (295-333)||(14976547-14976585)
chr8 (422-496)||(26931930-26932004)
chr8 (147-179)||(72962-72994)


Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 285 - 509
Target Start/End: Original strand, 35765787 - 35766011
Alignment:
Q  285 tattggactggtgtggcacctgccacaccatgcctagttcaggtccgcccctgctgatgatgctcttcatgctactcagaacgaactttctgaatttggt 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35765787 tattggactggtgtggcacctgccacaccatgcctagttcaggtccgcccctgctgatgatgctcttcatgctactcagaacgaactttctgaatttggt 35765886  T
Q  385 tgtatcatgactttctgtcggtccctatgcnnnnnnnaccaactctaaggtggaacttgtgaggcgacaatccaatgaggttgctcatgtgctcgcagga 484  Q
    ||||||||| |||||||||||||||||| |       | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35765887 tgtatcatgtctttctgtcggtccctatcctttttttatcaactctaaggtggaacttgtgaggcgacaatccaatgaggttgctcatgtgctcgcagga 35765986  T
Q  485 gaagccacattatatatattagcta 509  Q
    |||||||||||||||||||||||||    
T  35765987 gaagccacattatatatattagcta 35766011  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 291 - 337
Target Start/End: Original strand, 13217018 - 13217064
Alignment:
Q  291 actggtgtggcacctgccacaccatgcctagttcaggtccgcccctg 337  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||    
T  13217018 actggtgtggcacctgccacaccataccttgttcaggtccgcccctg 13217064  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 35765659 - 35765700
Alignment:
Q  147 gtccccgtattaatatatgattaaaaatatagatgcatgtgt 188  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  35765659 gtccccgtattaatatatgattaaaaatatagacgcatgtgt 35765700  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 288 - 337
Target Start/End: Complemental strand, 27001121 - 27001072
Alignment:
Q  288 tggactggtgtggcacctgccacaccatgcctagttcaggtccgcccctg 337  Q
    |||||||||||||||| |||||||||  ||||||| ||||||||||||||    
T  27001121 tggactggtgtggcacttgccacaccgggcctagtccaggtccgcccctg 27001072  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 186
Target Start/End: Complemental strand, 53840131 - 53840092
Alignment:
Q  147 gtccccgtattaatatatgattaaaaatatagatgcatgt 186  Q
    |||||| ||||||||||||| |||||||||||||||||||    
T  53840131 gtccccatattaatatatgagtaaaaatatagatgcatgt 53840092  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 13216889 - 13216921
Alignment:
Q  147 gtccccgtattaatatatgattaaaaatataga 179  Q
    |||||||||||||||||||| ||||||||||||    
T  13216889 gtccccgtattaatatatgagtaaaaatataga 13216921  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 24572237 - 24572269
Alignment:
Q  147 gtccccgtattaatatatgattaaaaatataga 179  Q
    |||||||||||||||||||| ||||||||||||    
T  24572237 gtccccgtattaatatatgagtaaaaatataga 24572269  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 458 - 496
Target Start/End: Original strand, 48770145 - 48770183
Alignment:
Q  458 aatgaggttgctcatgtgctcgcaggagaagccacatta 496  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  48770145 aatgaggttgctcatgttctcgcaggagaagccacatta 48770183  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 492
Target Start/End: Complemental strand, 48100883 - 48100813
Alignment:
Q  422 accaactctaaggtggaacttgtgaggcgacaatccaatgaggttgctcatgtgctcgcaggagaagccac 492  Q
    |||||||||| ||||||  |||  ||||||||| | |||| ||||||||||||||| ||||||||| ||||    
T  48100883 accaactctagggtggagtttgctaggcgacaagcaaatgtggttgctcatgtgcttgcaggagaatccac 48100813  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 337
Target Start/End: Complemental strand, 6261102 - 6261056
Alignment:
Q  291 actggtgtggcacctgccacaccatgcctagttcaggtccgcccctg 337  Q
    ||||||||| ||||||||||||||||||| |||||||||||| ||||    
T  6261102 actggtgtgacacctgccacaccatgccttgttcaggtccgctcctg 6261056  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 496
Target Start/End: Complemental strand, 23508993 - 23508919
Alignment:
Q  422 accaactctaaggtggaacttgtgaggcgacaatccaatgaggttgctcatgtgctcgcaggagaagccacatta 496  Q
    ||||| |||| ||||||  |||| ||||||||| | |||| |||||||||||| || ||||||||||||||||||    
T  23508993 accaattctagggtggagtttgttaggcgacaagcaaatggggttgctcatgttcttgcaggagaagccacatta 23508919  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 492
Target Start/End: Complemental strand, 11818586 - 11818516
Alignment:
Q  422 accaactctaaggtggaacttgtgaggcgacaatccaatgaggttgctcatgtgctcgcaggagaagccac 492  Q
    |||||||||| ||||||  |||| ||||||||| | || |||||||||||||| || ||||||||||||||    
T  11818586 accaactctagggtggagtttgttaggcgacaagcaaacgaggttgctcatgttcttgcaggagaagccac 11818516  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 447 - 496
Target Start/End: Original strand, 11553349 - 11553398
Alignment:
Q  447 ggcgacaatccaatgaggttgctcatgtgctcgcaggagaagccacatta 496  Q
    |||||||| | |||||||||| |||||| |||||||||||||||||||||    
T  11553349 ggcgacaagctaatgaggttgatcatgttctcgcaggagaagccacatta 11553398  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 287 - 337
Target Start/End: Complemental strand, 3548157 - 3548107
Alignment:
Q  287 ttggactggtgtggcacctgccacaccatgcctagttcaggtccgcccctg 337  Q
    ||||||||||||||||| ||||| |||  ||||||| ||||||||||||||    
T  3548157 ttggactggtgtggcacttgccataccgagcctagtccaggtccgcccctg 3548107  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 337
Target Start/End: Complemental strand, 13693890 - 13693848
Alignment:
Q  295 gtgtggcacctgccacaccatgcctagttcaggtccgcccctg 337  Q
    |||||||||||||||||| |||||| |||||||||||||||||    
T  13693890 gtgtggcacctgccacactatgccttgttcaggtccgcccctg 13693848  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 422 - 491
Target Start/End: Original strand, 13288084 - 13288153
Alignment:
Q  422 accaactctaaggtggaacttgtgaggcgacaatccaatgaggttgctcatgtgctcgcaggagaagcca 491  Q
    |||||||||| ||||||  |||  ||||||||| | |||| ||||||||||||||| |||||||||||||    
T  13288084 accaactctagggtggagtttgctaggcgacaaacaaatgcggttgctcatgtgcttgcaggagaagcca 13288153  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 492
Target Start/End: Original strand, 4614887 - 4614957
Alignment:
Q  422 accaactctaaggtggaacttgtgaggcgacaatccaatgaggttgctcatgtgctcgcaggagaagccac 492  Q
    |||||||||| ||||||  |||  ||||||||| | |||| ||||||||||||||| |||| |||||||||    
T  4614887 accaactctagggtggagtttgctaggcgacaaacaaatgtggttgctcatgtgcttgcagaagaagccac 4614957  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 496
Target Start/End: Complemental strand, 5185415 - 5185341
Alignment:
Q  422 accaactctaaggtggaacttgtgaggcgacaatccaatgaggttgctcatgtgctcgcaggagaagccacatta 496  Q
    |||||||||| ||||||  |||| | ||||||| |||||||||||| |||||| || ||| |||||| |||||||    
T  5185415 accaactctagggtggagtttgttaagcgacaaaccaatgaggttgttcatgttcttgcaagagaagtcacatta 5185341  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 492
Target Start/End: Original strand, 24065210 - 24065280
Alignment:
Q  422 accaactctaaggtggaacttgtgaggcgacaatccaatgaggttgctcatgtgctcgcaggagaagccac 492  Q
    ||||||| || ||||||  |||| ||||||||| | || |||||||||||||| || ||||||||||||||    
T  24065210 accaactttagggtggagtttgttaggcgacaagcaaacgaggttgctcatgttcttgcaggagaagccac 24065280  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 492
Target Start/End: Original strand, 41117187 - 41117256
Alignment:
Q  423 ccaactctaaggtggaacttgtgaggcgacaatccaatgaggttgctcatgtgctcgcaggagaagccac 492  Q
    ||||||||  ||||||  |||| ||||||||| ||||||||||||||||||  || ||| ||||||||||    
T  41117187 ccaactctcgggtggagtttgttaggcgacaagccaatgaggttgctcatgctcttgcaagagaagccac 41117256  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 186
Target Start/End: Complemental strand, 11079035 - 11078996
Alignment:
Q  147 gtccccgtattaatatatgattaaaaatatagatgcatgt 186  Q
    |||||||||||||||||||| |||||||||||| ||||||    
T  11079035 gtccccgtattaatatatgagtaaaaatatagacgcatgt 11078996  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 496
Target Start/End: Original strand, 36044933 - 36044988
Alignment:
Q  441 ttgtgaggcgacaatccaatgaggttgctcatgtgctcgcaggagaagccacatta 496  Q
    |||| ||||||||| ||||||||||||||||| | || | ||||||||||||||||    
T  36044933 ttgttaggcgacaagccaatgaggttgctcatattcttgtaggagaagccacatta 36044988  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 337
Target Start/End: Complemental strand, 34403887 - 34403842
Alignment:
Q  292 ctggtgtggcacctgccacaccatgcctagttcaggtccgcccctg 337  Q
    |||||||||||| ||||||||   ||||||||||||||||||||||    
T  34403887 ctggtgtggcacttgccacactgggcctagttcaggtccgcccctg 34403842  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 337
Target Start/End: Original strand, 17372813 - 17372860
Alignment:
Q  290 gactggtgtggcacctgccacaccatgcctagttcaggtccgcccctg 337  Q
    |||||||||||||| |||||||||  ||||||| ||||||||||||||    
T  17372813 gactggtgtggcacttgccacaccgggcctagtccaggtccgcccctg 17372860  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 291 - 333
Target Start/End: Original strand, 43430279 - 43430321
Alignment:
Q  291 actggtgtggcacctgccacaccatgcctagttcaggtccgcc 333  Q
    ||||||||||||| |||||||| |||||| |||||||||||||    
T  43430279 actggtgtggcacttgccacacgatgccttgttcaggtccgcc 43430321  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 338
Target Start/End: Complemental strand, 39721844 - 39721811
Alignment:
Q  305 tgccacaccatgcctagttcaggtccgcccctgc 338  Q
    ||||||||||||||| ||||||||||||||||||    
T  39721844 tgccacaccatgccttgttcaggtccgcccctgc 39721811  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 30075486 - 30075438
Alignment:
Q  291 actggtgtggcacctgccacaccatgcctagttcaggtccgcccctgct 339  Q
    ||||||||||||| ||||||||||||||| ||||| ||  |||||||||    
T  30075486 actggtgtggcacttgccacaccatgccttgttcaagtttgcccctgct 30075438  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 295 - 333
Target Start/End: Complemental strand, 14976585 - 14976547
Alignment:
Q  295 gtgtggcacctgccacaccatgcctagttcaggtccgcc 333  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  14976585 gtgtggcacttgccacaccatgccttgttcaggtccgcc 14976547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 496
Target Start/End: Complemental strand, 26932004 - 26931930
Alignment:
Q  422 accaactctaaggtggaacttgtgaggcgacaatccaatgaggttgctcatgtgctcgcaggagaagccacatta 496  Q
    |||||||||| ||| ||  |||| |||| |||| ||||||| |||| |||||| || ||||||||||||||||||    
T  26932004 accaactctagggtagagtttgttaggcaacaagccaatgaagttgttcatgttcttgcaggagaagccacatta 26931930  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 72962 - 72994
Alignment:
Q  147 gtccccgtattaatatatgattaaaaatataga 179  Q
    |||||||||||||||||||| ||||||||||||    
T  72962 gtccccgtattaatatatgagtaaaaatataga 72994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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