View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3387_high_4 (Length: 251)
Name: NF3387_high_4
Description: NF3387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3387_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 29 - 246
Target Start/End: Original strand, 9431806 - 9432023
Alignment:
| Q |
29 |
aaataaatggatcaaaatcaagacacgatttctccaaatcgcaccatgaattttgacgaaccttcaacatcaattttgagtaaattttcaacagcagctc |
128 |
Q |
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| T |
9431806 |
aaataaatggatcaaaatcacgacacgatttctccaaatcgcaccatgaattttgacgaaccttcaacatcaattttgagtaaattttcaacagcagctc |
9431905 |
T |
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| Q |
129 |
aatgagtaagtaaatgctaagttaacaaagaagtaattctaggaattttcgctacaattttcattaattttacattttagtttcatctggttatctgaat |
228 |
Q |
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| T |
9431906 |
aatgagtaagtaaatgctaagttaacaaagaagtaattctaggaattttcgctacaattttcattaattttacattttagtttcatctggttatctgaat |
9432005 |
T |
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| Q |
229 |
ctataatcctatgcttct |
246 |
Q |
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| T |
9432006 |
ctataatcctatggttct |
9432023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 9452768 - 9453010
Alignment:
| Q |
1 |
ttaaggtctaaaagaaacacattttccaaaataaatggatcaaaatcaagacacgatttctccaaatcgcaccatgaattttgacgaaccttcaacatca |
100 |
Q |
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| T |
9452768 |
ttaaggtctaaaataa-cacattttccaaaataaatggatcaaaatcacgacacaatttcttcaaatcgcatcaagatttttgacgaaccttcaacatca |
9452866 |
T |
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| Q |
101 |
attttgagtaaattttcaacagcagctcaatgagtaagtaaatgctaagttaacaaagaagtaattctaggaattttcgctacaattttcattaatttta |
200 |
Q |
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| T |
9452867 |
attt-gagtaacttttcaacagcagctcaatgagtatgaaaatgctaagttaacaaagcaataattctaggaattttctcaacaattttcattaatttta |
9452965 |
T |
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| Q |
201 |
cattttagtttcatctggttatctgaatctataatcctatgcttct |
246 |
Q |
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| T |
9452966 |
catgtt-gtttgatatggttatctgaatgtataatcctatggttct |
9453010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 115
Target Start/End: Original strand, 5611675 - 5611728
Alignment:
| Q |
62 |
ccaaatcgcaccatgaattttgacgaaccttcaacatcaattttgagtaaattt |
115 |
Q |
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| T |
5611675 |
ccaaatcataccacgatttttgacgaagcttcaacatcaattttgagtcaattt |
5611728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 115
Target Start/End: Original strand, 21156962 - 21157015
Alignment:
| Q |
62 |
ccaaatcgcaccatgaattttgacgaaccttcaacatcaattttgagtaaattt |
115 |
Q |
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| T |
21156962 |
ccaaatcataccacgatttttgacgaagcttcaacatcaattttgagtcaattt |
21157015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 122
Target Start/End: Complemental strand, 28074030 - 28073998
Alignment:
| Q |
90 |
cttcaacatcaattttgagtaaattttcaacag |
122 |
Q |
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|||||||||||||||||||| |||||||||||| |
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| T |
28074030 |
cttcaacatcaattttgagtcaattttcaacag |
28073998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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