View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3387_low_1 (Length: 883)
Name: NF3387_low_1
Description: NF3387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3387_low_1 |
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| [»] scaffold0206 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 676; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 676; E-Value: 0
Query Start/End: Original strand, 104 - 864
Target Start/End: Original strand, 3476671 - 3477431
Alignment:
| Q |
104 |
cctatcttggttggtggctatgcttgaaacgatttcaaggaattttggtgttagattatattagaactcttgtattttgtactttattttaataagttag |
203 |
Q |
| |
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||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3476671 |
cctatcttggttggtggctatccttgaaacaatttcaaggaattttggtgttagattatattagaactcttgtattttgtactttattttaataagttag |
3476770 |
T |
|
| Q |
204 |
gttaatttggtatatgaatacgtaaaatctttatgcttgtattgtactactatgtatgtatataaagtttgttgttttgtattagtttctatctatacta |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3476771 |
gttaatttggtatatgaatacgtaaaatctttatgcttgtattgtactactatgtatgtatataaagtttgttgttttgtattagtttctatctatacta |
3476870 |
T |
|
| Q |
304 |
ttcatattcatagaatgttattgtatttatttaagtatcatgacttgttaggaaattgttaattgttgaagtttagcagtaccttgtgaattgaagttta |
403 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3476871 |
ttcatattcatagaatgttattgtatttatttgagtatcatggcttgttaggaaattgttaattgttgaagtttagcagtaccttgtgaattgaagttta |
3476970 |
T |
|
| Q |
404 |
ttgtagttgtttgtttgatgggttttttgatttgatgataataactggcaacacaaaactctacatgttactagttttgctgtgtaacgtaagtgtgagt |
503 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
3476971 |
ttgtagttgtttgtttgatggggtttttgatttgatgataataactggcaacacaaaactctacatgttactagttttgttgtgtaacgtaagtttgagt |
3477070 |
T |
|
| Q |
504 |
gagtgtatgtttggatgagcaataagtttggcaaaattattgtagcaccatgattttgttgaagctacaaagtgcagtttttataaaaaatcacacaggc |
603 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3477071 |
gagtgtatgtttggatgagcaataagtttggcaaaattattgtagcaccatgattttgttgaagctacaaagtgtagtttttataaaaaatcacacaggc |
3477170 |
T |
|
| Q |
604 |
ttagaaaatcacacaggctcaccgtattatgacaaatttaattactgtcaatccaaacatttatcaagtannnnnnnagtattgtggttgttgataagtg |
703 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
3477171 |
ttaaaaaatcacacaggctcaccgtattatgacaaatttaattactgtcaatccaaacagttatcaagtatttttttagtattgtggttgttgataagtg |
3477270 |
T |
|
| Q |
704 |
acatgatgataagattagattaactagagtttgtgagttggtggatgattaagattgctggaaattgcatgagattcatgggaatctttctaccatcttt |
803 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3477271 |
acatgatgataagattagattaactagagtttgtgagttggtgaatgattaaggttgctggaaattgcatgagattcatgggaatctttctaccatcttg |
3477370 |
T |
|
| Q |
804 |
gtgaattgaatctgtcacacatttctctgattgatgatgatgataatgacagggaagacta |
864 |
Q |
| |
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||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
3477371 |
gtgaattgaatttgtcacacatttctccgattgatgatgatgataatgatagggaagacta |
3477431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 3476570 - 3476613
Alignment:
| Q |
3 |
aggaggagcagagagcttgtgttgatgggttgcaaggtttggat |
46 |
Q |
| |
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||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
3476570 |
aggaggagccgggagcttgtgttgatgggttgcaaggtttggat |
3476613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0206 (Bit Score: 529; Significance: 0; HSPs: 2)
Name: scaffold0206
Description:
Target: scaffold0206; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 104 - 847
Target Start/End: Original strand, 16016 - 16751
Alignment:
| Q |
104 |
cctatcttggttggtggctatgcttgaaacgatttcaaggaattttggtgttagattatattagaactcttgtattttgtactttattttaataagttag |
203 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
16016 |
cctatcttcgttggtggctatgcttgaaacgatttcaaggaattttggtgttagattatattagaactcttgttttttgtactctattttaataagttag |
16115 |
T |
|
| Q |
204 |
gttaatttggtatatgaatacgtaaaatctttatgcttgtattgtactactatgtatgtatataaagtttgttgttttg-----tattagtttctatcta |
298 |
Q |
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||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
16116 |
gttaatttggtgtatgaattcgtaaaatctttatgcttgtattgtactactatgtatgtatataaagtttgttgttttgtattatattagtttctatcta |
16215 |
T |
|
| Q |
299 |
tactattcatattcatagaa---tgttattgtatttatttaagtatcatgacttgttaggaaattgttaattgttgaagtttagcagtaccttgtgaatt |
395 |
Q |
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|||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16216 |
tactattcatattcatagaatgttgttattgtatttatttgagtatcatggcttgttaggaaattgttaattgttgaagtttagcagtaccttgtgaatt |
16315 |
T |
|
| Q |
396 |
gaagtttattgtagttgtttgtttgatgggttttttgatttgatgataataactggcaacacaaaactctacatgttactagttttgctgtgtaacgt-- |
493 |
Q |
| |
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|| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
16316 |
gaggtttattgtagttgtttgtttgatggggtttttgatttgatgataataacttgcaacacaaaactctacatgttactagttttgttgtgtaacgtgc |
16415 |
T |
|
| Q |
494 |
aagtgtgagtgagtgtatgtttggatgagcaataagtttggcaaaattattgtagcaccatgattttgttgaagctacaaagtgcagtttttataaaaaa |
593 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||| |
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| T |
16416 |
aagtgtgagtgagtgtatgtttggatgagcaataagtttggcaaaattattgtagccccataattttgttgaagctacaaagtgtagtttttataa---- |
16511 |
T |
|
| Q |
594 |
tcacacaggcttagaaaatcacacaggctcaccgtattatgacaaatttaattactgtcaatccaaacatttatcaagtannnnnnnagtattgtggttg |
693 |
Q |
| |
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|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
16512 |
--------------aatatcacacatgctcaccgtattatgacaaatttaattactgtcaatccaaacatttatcaagtattttttgagtattgtggttg |
16597 |
T |
|
| Q |
694 |
ttgataagtgacatgatgataagattagattaactagagtttgtgagttggtggatgattaagattgctggaaattgcatgagattcatgggaatctttc |
793 |
Q |
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||||||||||||| |||||| ||||||||||||||||||||| ||||||| || ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
16598 |
ttgataagtgacacgatgatgagattagattaactagagtttctgagttgttgaatgattaaggttgctggaaattgcatgagattcatgggaatctttc |
16697 |
T |
|
| Q |
794 |
taccatctttgtgaattgaatctgtcacacatttctctgattgatgatgatgat |
847 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
16698 |
taccctctttgtgaattgaatttgtcacacatttctccgattgatgatgatgat |
16751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0206; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 15918 - 15958
Alignment:
| Q |
6 |
aggagcagagagcttgtgttgatgggttgcaaggtttggat |
46 |
Q |
| |
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|||||| | |||||||||||||||||||||||||||||||| |
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| T |
15918 |
aggagccgggagcttgtgttgatgggttgcaaggtttggat |
15958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 548 - 585
Target Start/End: Complemental strand, 50230033 - 50229996
Alignment:
| Q |
548 |
gcaccatgattttgttgaagctacaaagtgcagttttt |
585 |
Q |
| |
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|||| ||||||||||||||||||||||||| ||||||| |
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| T |
50230033 |
gcactatgattttgttgaagctacaaagtgtagttttt |
50229996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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