View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3387_low_2 (Length: 409)
Name: NF3387_low_2
Description: NF3387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3387_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 53 - 398
Target Start/End: Original strand, 499285 - 499633
Alignment:
| Q |
53 |
tcatcgattaataaaatgt-gagttataattggttcacctacgcaaattttgacaccgtgtatgccaaaatactataccgatttaacaacatttattgat |
151 |
Q |
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| T |
499285 |
tcatcgattaataaaatgtagagttataattggttcacctacgcaaattttgacaccgtgtatgccaaaatactataccggtttaacaacatttattgat |
499384 |
T |
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| Q |
152 |
ctatggtatact--tttacatacatgtctctctacttcacgtcaaagaaattggacattatgaaattcttttgctgtattttaattaagatgataatcgc |
249 |
Q |
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|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
499385 |
ctatggtatactcttttacatacatgtctctctacttcacctcaaagaaattggacattatgaaattcttttgctgtattttaattaagatgataatcgc |
499484 |
T |
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| Q |
250 |
taaacaatgaagaaaaagccaacacatgaagccaaacgtctcatccgttttggactaacctcatttccaataatttgttgattataacgtccaaggatca |
349 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
499485 |
tacacaatgaagaaaaagccaacacatgaagccaaacgtctcacccgttttggactaacctcatttccaataatttgttgattataatgtccaaggatca |
499584 |
T |
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| Q |
350 |
aggttcttgtcatgctgtttactactttttaaattatattccgtttcat |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
499585 |
aggttcttgtcatgctgtttactactttttaaattatattccgtttcat |
499633 |
T |
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