View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3387_low_3 (Length: 407)
Name: NF3387_low_3
Description: NF3387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3387_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 24 - 342
Target Start/End: Original strand, 3950553 - 3950870
Alignment:
| Q |
24 |
gtagatgataacattgaattgatttgttggaatatctcatgtactacttgtgcatgtagatgatgatgatgtttattatagtaatccaaaaaatattata |
123 |
Q |
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| T |
3950553 |
gtagatgataacattgaattgatttgttggaatatctcatgtactacttgtgcatgtagatgatgatgatgtttattatagtaatccaaaaaatattata |
3950652 |
T |
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| Q |
124 |
ccatgagaggaaaaagtacacatgctaattgatgctatcgttcatggtgattgaacaagacttataatgatgcatgaataaaaagataaggattgtgatg |
223 |
Q |
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| T |
3950653 |
ccatgagaggaaaaagtacacatgctaattgatgctatcgttcatggtgattgaacaagacttataatgatgcatgaat-aaaagataaggattgtgatg |
3950751 |
T |
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| Q |
224 |
tgagtctccattaatcataattctactaattgacaataacattgggttatagatcaaggaaaaataattcataaatcatatgatttctttgcatatcttt |
323 |
Q |
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| T |
3950752 |
tgagtctccattaatcataattctactaattgacaataacattgggttatagatcaaggaaaaataattcataaatcatatgatttctttgcatatcttt |
3950851 |
T |
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| Q |
324 |
aaatgtcgggacttcccat |
342 |
Q |
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| T |
3950852 |
aaatgtcgggacttcccat |
3950870 |
T |
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