View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3387_low_5 (Length: 240)
Name: NF3387_low_5
Description: NF3387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3387_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 9431735 - 9431509
Alignment:
| Q |
1 |
cgtagatgtatctcttctaatttaatcagggtttaagnnnnnnnnnct-tttctaatacattcaatcacaatcccgtaacatttagatcatattatacat |
99 |
Q |
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| T |
9431735 |
cgtagatgtatctcttctaatttaatcagggtttaagtttttttttttctttctaatacattcaatcacaatcccgtaacatttagatcatattatacat |
9431636 |
T |
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| Q |
100 |
atcttttctaaggtttcagtttaattctcattttgaacatgcaataacgttaaatctcttagaatannnnnnnnnccgcccatttaaatcttatatgact |
199 |
Q |
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| T |
9431635 |
atcttttctaaggtttcagtttaattctcattttgaacatgtaataacgttaaatctcttag-atttttttttttccgcccatttaaatcttatatgact |
9431537 |
T |
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| Q |
200 |
tggagaatagtcattgtagttatgcatg |
227 |
Q |
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| T |
9431536 |
cggagaatagtctttgtactaatgcatg |
9431509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 127
Target Start/End: Complemental strand, 9452620 - 9452545
Alignment:
| Q |
52 |
ctaatacattcaatcacaatcccgtaacatttagatcatattatacatatcttttctaaggtttcagtttaattct |
127 |
Q |
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|||||||||||||||||||||| |||||||||||| |||||| | ||||| ||||||||||| ||||||||||| |
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| T |
9452620 |
ctaatacattcaatcacaatccaataacatttagatgatattacatgtatctcttctaaggttttagtttaattct |
9452545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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