View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3388-Insertion-1 (Length: 805)

Name: NF3388-Insertion-1
Description: NF3388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3388-Insertion-1
NF3388-Insertion-1
[»] chr2 (33 HSPs)
chr2 (8-805)||(24541263-24542065)
chr2 (48-403)||(17911108-17911462)
chr2 (270-404)||(14456435-14456570)
chr2 (261-404)||(40221126-40221269)
chr2 (261-407)||(4286697-4286843)
chr2 (248-312)||(26543972-26544036)
chr2 (270-341)||(45475437-45475508)
chr2 (263-341)||(2917680-2917758)
chr2 (269-388)||(3795286-3795406)
chr2 (327-399)||(4286033-4286105)
chr2 (327-398)||(7779584-7779655)
chr2 (327-402)||(14002455-14002530)
chr2 (263-341)||(23409499-23409577)
chr2 (331-389)||(31568648-31568706)
chr2 (270-312)||(43618599-43618641)
chr2 (269-310)||(2983428-2983469)
chr2 (272-341)||(27276381-27276450)
chr2 (264-304)||(41565352-41565392)
chr2 (286-388)||(3803564-3803667)
chr2 (328-403)||(12252545-12252620)
chr2 (269-312)||(25184834-25184877)
chr2 (269-312)||(33222642-33222685)
chr2 (269-336)||(34921763-34921830)
chr2 (269-312)||(41183228-41183271)
chr2 (269-311)||(17424159-17424201)
chr2 (327-397)||(38779702-38779772)
chr2 (269-311)||(43982226-43982268)
chr2 (284-341)||(2648795-2648852)
chr2 (328-405)||(16544679-16544756)
chr2 (269-310)||(28477071-28477112)
chr2 (269-310)||(31974251-31974292)
chr2 (271-312)||(40055403-40055444)
chr2 (264-301)||(41566164-41566201)
[»] chr3 (38 HSPs)
chr3 (48-403)||(50604198-50604558)
chr3 (48-405)||(3112575-3112937)
chr3 (248-405)||(1294060-1294217)
chr3 (269-405)||(2743330-2743467)
chr3 (263-341)||(7247858-7247936)
chr3 (270-388)||(45507402-45507520)
chr3 (264-371)||(30839159-30839266)
chr3 (284-386)||(13743245-13743347)
chr3 (263-341)||(19440253-19440331)
chr3 (332-406)||(32592149-32592223)
chr3 (263-341)||(41579722-41579800)
chr3 (269-341)||(19341598-19341670)
chr3 (263-399)||(34645501-34645637)
chr3 (269-341)||(41802995-41803067)
chr3 (269-341)||(48250873-48250945)
chr3 (269-312)||(34712763-34712806)
chr3 (263-341)||(41805673-41805751)
chr3 (265-311)||(55385164-55385210)
chr3 (272-341)||(46344934-46345003)
chr3 (269-341)||(4002509-4002581)
chr3 (269-341)||(28611104-28611176)
chr3 (269-341)||(34691622-34691694)
chr3 (269-341)||(52570570-52570642)
chr3 (269-312)||(6143697-6143740)
chr3 (269-304)||(8156542-8156577)
chr3 (269-336)||(30256007-30256074)
chr3 (269-304)||(34712267-34712302)
chr3 (269-311)||(2647703-2647745)
chr3 (270-312)||(6144303-6144345)
chr3 (269-311)||(20918015-20918057)
chr3 (269-311)||(20926977-20927019)
chr3 (270-312)||(21343499-21343541)
chr3 (269-311)||(34049107-34049149)
chr3 (269-311)||(43476219-43476261)
chr3 (269-311)||(46989574-46989616)
chr3 (269-311)||(54389822-54389864)
chr3 (269-310)||(14043902-14043943)
chr3 (269-378)||(24700681-24700790)
[»] chr8 (30 HSPs)
chr8 (68-403)||(26237457-26237784)
chr8 (255-394)||(38330461-38330599)
chr8 (248-394)||(38331030-38331166)
chr8 (280-404)||(27412333-27412457)
chr8 (252-376)||(40039671-40039795)
chr8 (253-376)||(40039088-40039211)
chr8 (263-344)||(18438628-18438709)
chr8 (270-403)||(28694013-28694146)
chr8 (264-372)||(32382666-32382774)
chr8 (264-372)||(32436621-32436729)
chr8 (327-403)||(13782170-13782246)
chr8 (264-312)||(13783107-13783155)
chr8 (269-341)||(42602457-42602529)
chr8 (269-311)||(34366938-34366980)
chr8 (269-338)||(21406267-21406336)
chr8 (269-338)||(21800759-21800828)
chr8 (330-398)||(4174027-4174095)
chr8 (269-341)||(18205783-18205855)
chr8 (269-341)||(35962304-35962376)
chr8 (320-399)||(35555227-35555306)
chr8 (328-403)||(38134175-38134250)
chr8 (269-312)||(40740932-40740975)
chr8 (270-341)||(41855365-41855436)
chr8 (269-311)||(22550869-22550911)
chr8 (264-310)||(32383204-32383250)
chr8 (264-310)||(32437159-32437205)
chr8 (327-405)||(39208403-39208481)
chr8 (269-311)||(39601731-39601773)
chr8 (330-399)||(4395043-4395112)
chr8 (265-341)||(41858123-41858197)
[»] chr5 (24 HSPs)
chr5 (49-256)||(4434125-4434328)
chr5 (296-403)||(4434333-4434441)
chr5 (248-399)||(13838407-13838558)
chr5 (269-391)||(27532621-27532743)
chr5 (266-399)||(27531861-27531994)
chr5 (263-312)||(41201754-41201803)
chr5 (269-404)||(7017445-7017581)
chr5 (320-404)||(34080127-34080211)
chr5 (327-403)||(41622108-41622184)
chr5 (269-344)||(34122518-34122593)
chr5 (270-337)||(34682258-34682325)
chr5 (263-337)||(3603146-3603220)
chr5 (264-345)||(1398597-1398678)
chr5 (269-345)||(18307247-18307323)
chr5 (269-341)||(18538339-18538411)
chr5 (270-338)||(29430022-29430090)
chr5 (270-338)||(29430583-29430651)
chr5 (265-304)||(11346041-11346080)
chr5 (269-304)||(28876677-28876712)
chr5 (269-312)||(35926388-35926431)
chr5 (269-311)||(19037474-19037516)
chr5 (327-388)||(13563617-13563678)
chr5 (264-341)||(28388518-28388595)
chr5 (271-304)||(39743154-39743187)
[»] chr1 (35 HSPs)
chr1 (53-164)||(49697687-49697798)
chr1 (197-403)||(49697465-49697683)
chr1 (267-399)||(41459213-41459345)
chr1 (269-404)||(44470015-44470150)
chr1 (269-370)||(24364729-24364830)
chr1 (263-344)||(41804031-41804112)
chr1 (264-373)||(6562866-6562975)
chr1 (327-406)||(38879280-38879359)
chr1 (263-341)||(46141779-46141857)
chr1 (327-380)||(48228364-48228417)
chr1 (264-341)||(52802127-52802204)
chr1 (270-393)||(1167506-1167630)
chr1 (265-337)||(11183187-11183259)
chr1 (261-389)||(47585547-47585674)
chr1 (265-394)||(13147439-13147569)
chr1 (281-339)||(46973203-46973261)
chr1 (327-405)||(50036780-50036858)
chr1 (269-402)||(26606734-26606867)
chr1 (269-341)||(6562165-6562237)
chr1 (269-341)||(13173833-13173904)
chr1 (327-403)||(13761106-13761182)
chr1 (269-341)||(23276112-23276184)
chr1 (265-341)||(49927513-49927589)
chr1 (263-310)||(36072397-36072444)
chr1 (261-304)||(47586233-47586276)
chr1 (270-309)||(50037275-50037314)
chr1 (262-312)||(5845485-5845535)
chr1 (263-341)||(6437537-6437615)
chr1 (269-311)||(13636126-13636168)
chr1 (269-311)||(19161919-19161961)
chr1 (263-341)||(29438018-29438096)
chr1 (269-338)||(3941154-3941223)
chr1 (269-310)||(16270029-16270070)
chr1 (263-304)||(26633561-26633602)
chr1 (269-310)||(44336277-44336318)
[»] chr6 (14 HSPs)
chr6 (270-399)||(31496173-31496302)
chr6 (270-399)||(31501559-31501688)
chr6 (269-341)||(23958887-23958959)
chr6 (270-404)||(17596874-17597009)
chr6 (265-399)||(31516061-31516195)
chr6 (270-311)||(14012380-14012421)
chr6 (320-405)||(35096604-35096689)
chr6 (269-341)||(31768750-31768822)
chr6 (269-311)||(6204854-6204896)
chr6 (269-311)||(11691821-11691863)
chr6 (269-311)||(22305135-22305177)
chr6 (364-397)||(21510700-21510733)
chr6 (269-338)||(28362735-28362804)
chr6 (270-399)||(31480301-31480430)
[»] chr4 (28 HSPs)
chr4 (269-399)||(20208449-20208579)
chr4 (320-391)||(6790211-6790282)
chr4 (261-404)||(33409461-33409600)
chr4 (269-399)||(19069125-19069256)
chr4 (49-114)||(21091593-21091658)
chr4 (261-310)||(33410225-33410274)
chr4 (263-339)||(955791-955867)
chr4 (269-341)||(9889991-9890063)
chr4 (269-388)||(15995671-15995791)
chr4 (320-399)||(46439617-46439696)
chr4 (263-341)||(11494541-11494618)
chr4 (272-337)||(29700309-29700374)
chr4 (269-310)||(37022065-37022106)
chr4 (285-381)||(3403804-3403900)
chr4 (264-312)||(26791675-26791723)
chr4 (260-304)||(33383839-33383883)
chr4 (328-403)||(48807449-48807522)
chr4 (269-304)||(11084011-11084046)
chr4 (284-399)||(40335155-40335270)
chr4 (263-310)||(49572898-49572945)
chr4 (269-311)||(6178114-6178156)
chr4 (269-311)||(8109418-8109460)
chr4 (269-311)||(21018008-21018050)
chr4 (269-311)||(49094111-49094153)
chr4 (269-311)||(55793947-55793989)
chr4 (329-382)||(6790984-6791037)
chr4 (269-310)||(21022892-21022933)
chr4 (286-399)||(44010503-44010616)
[»] chr7 (23 HSPs)
chr7 (265-341)||(9494806-9494882)
chr7 (248-310)||(48590322-48590384)
chr7 (279-406)||(40140670-40140798)
chr7 (320-399)||(34139724-34139803)
chr7 (327-376)||(38266163-38266212)
chr7 (269-341)||(30355243-30355315)
chr7 (269-341)||(48314670-48314742)
chr7 (248-279)||(7974972-7975003)
chr7 (269-312)||(10098121-10098164)
chr7 (265-304)||(15074228-15074267)
chr7 (270-301)||(27919070-27919101)
chr7 (269-312)||(29112399-29112442)
chr7 (265-304)||(34742395-34742434)
chr7 (269-304)||(36781453-36781488)
chr7 (269-312)||(38265471-38265514)
chr7 (269-303)||(8522140-8522174)
chr7 (269-311)||(9367728-9367770)
chr7 (271-381)||(22640673-22640783)
chr7 (265-303)||(31324806-31324844)
chr7 (271-341)||(34623386-34623456)
chr7 (331-376)||(18220022-18220067)
chr7 (270-303)||(31323084-31323117)
chr7 (263-304)||(38555411-38555452)
[»] scaffold0341 (2 HSPs)
scaffold0341 (264-373)||(18056-18165)
scaffold0341 (269-341)||(17355-17427)
[»] scaffold0068 (1 HSPs)
scaffold0068 (333-410)||(46663-46740)
[»] scaffold0176 (1 HSPs)
scaffold0176 (320-399)||(649-728)
[»] scaffold0618 (1 HSPs)
scaffold0618 (272-341)||(3882-3951)
[»] scaffold0794 (1 HSPs)
scaffold0794 (269-312)||(5297-5340)
[»] scaffold0116 (1 HSPs)
scaffold0116 (270-341)||(15960-16031)
[»] scaffold0065 (1 HSPs)
scaffold0065 (327-403)||(65252-65329)


Alignment Details
Target: chr2 (Bit Score: 565; Significance: 0; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 8 - 805
Target Start/End: Complemental strand, 24542065 - 24541263
Alignment:
Q  8 gtaatgataaaacaaatcacctactcctctnnnnnnnnnnttcacttggttcgtatctagaaaaaataattaacttgctcaattaaatatagaatttaac 107  Q
    |||||||||||||||||||||| |||||||          ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24542065 gtaatgataaaacaaatcacctgctcctctaaataaaaa-ttcacttggttcgtatctagaaaaaataattgacttgctcaattaaatatagaatttaac 24541967  T
Q  108 ttcaatagaactttttaattgaccttctcagtgtgtatagtgctaactaaaaatcttaaatcttaattacaatcaaataaatgggggcggaattaaagca 207  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  24541966 ttcaataaaactttttaattgaccttctaagtgtgtatagtgctaactaaaaatcttatatcttaattacaatcaaatcaatgggggcggaattaaagca 24541867  T
Q  208 aaatgcattaatgactacaagatggaagaaaatgctctacatgggtgaaactaaatttcgacagttaactgccgaggttttcctcggaagttaactgaag 307  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  24541866 aaatgcattaatgactacaggattgaagaaaatgctctacatgggtgaaactgaatttcgacagttaactgccgaggttttcttcggaagttaactgaag 24541767  T
Q  308 ccggtcttggacttcctctgcagttaactgccgaaggacattttagtactttacatgtgtttttcagccaaacagcatgtgtcaacaacaatactcttaa 407  Q
    || || || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  24541766 ccagttttagacttcctctgcagttaactgccgaaggacattttagtattttacatgtgtttttcagccaaacaacacgtgtcaacaacaatactcttaa 24541667  T
Q  408 tttggtatttgcatgttggctaagaatttttagtggccaagtttgcttaatgg-----nnnnnnnnnnnnnnnncatacaagaagtttgcttaatggtta 502  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||                     ||||||||||||||||||||||||||    
T  24541666 tttggtatttgcatgttggctaagaatttttaatggccaagtttgcttaatggtttttttttttttttttttttcatacaagaagtttgcttaatggtta 24541567  T
Q  503 agtagtcttgctttatggtaagaatcttgggtgactaagttcaagaccaagatgttttactacatatatgttgggtgnnnnnnngggaaagatcaagaag 602  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||       ||||||||||||||||    
T  24541566 agtagtcttgctttatggtaagaacctt-ggtgactaagttcaagaccaagatgttttactacatatatgttggttgtttttttgggaaagatcaagaag 24541468  T
Q  603 tttgcttaatggttaagtagtcttgatttatggtaagaagcctaagtaagttcaagaccaagatgttttactacatatatgttggttgttttttgggaaa 702  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||    
T  24541467 tttgcttaatggttaagtagtcttgatttatggtaagaagcctaagtaagttcaagaccaagatgttttactacatatgtgttggttgtttttttgggaa 24541368  T
Q  703 agatttcttctttagtaagattacttcttagttaatattgcttcat-gtcaatctttatgtcatgg-ggctaagtaaattcggtcactaaatttactcaa 800  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  24541367 agatttcttctttagtaagattacttcttagttaatattgcttcatggtcaatctttatgtcatggtggctaagtaaatttggtcactaaatttactcaa 24541268  T
Q  801 caaga 805  Q
    |||||    
T  24541267 caaga 24541263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 48 - 403
Target Start/End: Complemental strand, 17911462 - 17911108
Alignment:
Q  48 ttcacttggttcgtatctagaaaaaataattaacttgctcaattaaatatagaatttaacttcaatagaactttttaattgaccttctcagtgtgtatag 147  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||| | |||||||    
T  17911462 ttcacttggttcgtatccagaaaaaataattgacttgctcaattaaatatagcatttaacttcaataaaactttctaattgaccttctcactatgtatag 17911363  T
Q  148 tgctaactaaaaatcttaaatcttaattacaatcaaataaatgggggcggaattaaagcaaaatgcattaatgactacaagatggaagaaaatgctctac 247  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| |||||    
T  17911362 tgctaacaaaaaatcttaaatcttaattacaatcaaatcaatgggg-cggaattaaagcaaaatgcattaatggctacaggatggaagaaaatggtctac 17911264  T
Q  248 atgggtgaaactaaatttcgacagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccgaaggaca 347  Q
    ||| |||||||| ||||||  ||||||||||| |||||||||||||| | ||||||| ||||||| |||||||||||| ||||||||||| |||||||||    
T  17911263 atgagtgaaactgaatttcagcagttaactgctgaggttttcctcggtaattaactgcagccggttttggacttcctcggcagttaactgtcgaaggaca 17911164  T
Q  348 ttttagtactttacatgtgtttttcagccaaacagcatgtgtcaacaacaatactc 403  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||    
T  17911163 ttttagtattttacatgtgtttttcagccaaacaacatgtgtcaacatcaatactc 17911108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 270 - 404
Target Start/End: Complemental strand, 14456570 - 14456435
Alignment:
Q  270 agttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga-aggacattttagtactttacatgtgtt 368  Q
    ||||||||||||||||||||||||| ||||||||| ||||||| ||    || ||| |||||||||||| ||  ||  ||||| ||| |||||  |||||    
T  14456570 agttaactgccgaggttttcctcggcagttaactgcagccggttttatttttgctcggcagttaactgcagagggggtattttggtattttactggtgtt 14456471  T
Q  369 tttcagccaaacagcatgtgtcaacaacaatactct 404  Q
    | |||||||||||  ||||||||||| |||||||||    
T  14456470 tctcagccaaacataatgtgtcaacagcaatactct 14456435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 261 - 404
Target Start/End: Original strand, 40221126 - 40221269
Alignment:
Q  261 aatttcgacagttaactgccgaggttttcctcggaagttaactgaagccggt---cttggacttcctctgcagttaactgccgaaggacattttagtact 357  Q
    ||||||| |||||||||||||||||||||||||| ||||||||| |||||||    || || |   || ||||||||||||||| ||| |||| |||| |    
T  40221126 aatttcggcagttaactgccgaggttttcctcggtagttaactgcagccggtgtctttagaat---tcggcagttaactgccgagggatatttaagtaat 40221222  T
Q  358 ttacatgtgtttttcagccaaacagcatgtgtcaacaacaatactct 404  Q
    ||||  |||| | ||||||||| | |||||||||||| |||| ||||    
T  40221223 ttactcgtgtatctcagccaaagaacatgtgtcaacagcaattctct 40221269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 261 - 407
Target Start/End: Original strand, 4286697 - 4286843
Alignment:
Q  261 aatttcgacagttaactgccgaggttttcctcggaagttaactgaagccggt---cttggacttcctctgcagttaactgccgaaggacattttagtact 357  Q
    ||||||| ||||||||||||||||||||| |||||||||||||| ||| |||    || || |   || ||||||||||| ||| ||  |||| |||| |    
T  4286697 aatttcggcagttaactgccgaggttttcatcggaagttaactgcagctggtttctttagaat---tcggcagttaactgtcgaggggtatttgagtaat 4286793  T
Q  358 ttacatgtgtttttcagccaaacagcatgtgtcaacaacaatactcttaa 407  Q
    ||||  |||||| ||||||||| | ||||||||||||||||| |||||||    
T  4286794 ttactagtgtttctcagccaaagaacatgtgtcaacaacaattctcttaa 4286843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 248 - 312
Target Start/End: Original strand, 26543972 - 26544036
Alignment:
Q  248 atgggtgaaactaaatttcgacagttaactgccgaggttttcctcggaagttaactgaagccggt 312  Q
    |||||||||||| ||||||| ||||||||| |||||||||||||| | ||||||||| |||||||    
T  26543972 atgggtgaaactgaatttcggcagttaactaccgaggttttcctcagtagttaactgcagccggt 26544036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 270 - 341
Target Start/End: Complemental strand, 45475508 - 45475437
Alignment:
Q  270 agttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga 341  Q
    |||||||| |||||||||||||||| ||||||||| ||||||| || || || ||| |||||||||||||||    
T  45475508 agttaactaccgaggttttcctcggcagttaactgtagccggtttttgaatttctcggcagttaactgccga 45475437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 263 - 341
Target Start/End: Complemental strand, 2917758 - 2917680
Alignment:
Q  263 tttcgacagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga 341  Q
    ||||||||||||||| | |||||||||||||| ||||||||| ||||||| ||  | || ||| |||||||||||||||    
T  2917758 tttcgacagttaactactgaggttttcctcggcagttaactgtagccggtttttcaatttctcggcagttaactgccga 2917680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 269 - 388
Target Start/End: Complemental strand, 3795406 - 3795286
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga-aggacattttagtactttacatgtgt 367  Q
    ||||||||| || ||||||||||||| ||||||||| ||||||  ||  | ||||||  ||||||||||||||  ||| |||  |||| ||||| |||||    
T  3795406 cagttaacttccaaggttttcctcggcagttaactgcagccggatttcaaattcctcgacagttaactgccgaggggatattcaagtaatttacttgtgt 3795307  T
Q  368 ttttcagccaaacagcatgtg 388  Q
    || ||||||||||| ||||||    
T  3795306 ttctcagccaaacaacatgtg 3795286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 327 - 399
Target Start/End: Complemental strand, 4286105 - 4286033
Alignment:
Q  327 gcagttaactgccgaaggacattttagtactttacatgtgtttttcagccaaacagcatgtgtcaacaacaat 399  Q
    ||||||||||||||| ||  |||| |||| |||||  |||||| ||||||||||| |||||||||||||||||    
T  4286105 gcagttaactgccgatgggtatttgagtaatttactcgtgtttctcagccaaacaacatgtgtcaacaacaat 4286033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 327 - 398
Target Start/End: Complemental strand, 7779655 - 7779584
Alignment:
Q  327 gcagttaactgccgaaggacattttagtactttacatgtgtttttcagccaaacagcatgtgtcaacaacaa 398  Q
    ||||||||||||||||||| |||||  |  ||||||||||||| ||||||||||   |||||||||||||||    
T  7779655 gcagttaactgccgaaggatattttcatcttttacatgtgtttctcagccaaaccaaatgtgtcaacaacaa 7779584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 327 - 402
Target Start/End: Complemental strand, 14002530 - 14002455
Alignment:
Q  327 gcagttaactgccgaaggacattttagtactttacatgtgtttttcagccaaacagcatgtgtcaacaacaatact 402  Q
    ||||||||||||||| |||||||| |||| |||||  |||||| ||||||||||   ||||||||||| |||||||    
T  14002530 gcagttaactgccgagggacatttgagtaatttactcgtgtttctcagccaaaccaaatgtgtcaacagcaatact 14002455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 263 - 341
Target Start/End: Original strand, 23409499 - 23409577
Alignment:
Q  263 tttcgacagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga 341  Q
    ||||| ||||| ||| |||||||||||||||| ||||||||| |||| || || || |||||| ||| |||||||||||    
T  23409499 tttcggcagtttacttccgaggttttcctcggcagttaactgcagccagtttttgaattcctcggcaattaactgccga 23409577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 331 - 389
Target Start/End: Original strand, 31568648 - 31568706
Alignment:
Q  331 ttaactgccgaaggacattttagtactttacatgtgtttttcagccaaacagcatgtgt 389  Q
    ||||||||||| ||  ||||||||| ||||||||||||| ||||||||||| |||||||    
T  31568648 ttaactgccgaggggtattttagtattttacatgtgtttctcagccaaacaacatgtgt 31568706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 270 - 312
Target Start/End: Complemental strand, 43618641 - 43618599
Alignment:
Q  270 agttaactgccgaggttttcctcggaagttaactgaagccggt 312  Q
    ||||||||||||||||||||||||| ||||||||| |||||||    
T  43618641 agttaactgccgaggttttcctcggtagttaactgcagccggt 43618599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 269 - 310
Target Start/End: Complemental strand, 2983469 - 2983428
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccg 310  Q
    |||||||||||||||||||||||||| ||||||||| |||||    
T  2983469 cagttaactgccgaggttttcctcggtagttaactgcagccg 2983428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 272 - 341
Target Start/End: Original strand, 27276381 - 27276450
Alignment:
Q  272 ttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga 341  Q
    |||||| |||||||||||||||| ||||||||| ||||||  ||  | |||||| |||||||||||||||    
T  27276381 ttaactcccgaggttttcctcggcagttaactgcagccggatttcaaattcctcagcagttaactgccga 27276450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 41565392 - 41565352
Alignment:
Q  264 ttcgacagttaactgccgaggttttcctcggaagttaactg 304  Q
    |||| |||||||||||||||||||||||||| |||||||||    
T  41565392 ttcggcagttaactgccgaggttttcctcggtagttaactg 41565352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 286 - 388
Target Start/End: Original strand, 3803564 - 3803667
Alignment:
Q  286 tttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccgaagg-acattttagtactttacatgtgtttttcagccaaacagca 384  Q
    ||||||||| ||||||||| ||||||  ||  | |||||| ||||||||||||||| || | ||||  ||| ||||| ||||||| ||||||||||| ||    
T  3803564 tttcctcggcagttaactgcagccggatttcaaattcctcggcagttaactgccgatgggatatttgggtaatttacttgtgtttctcagccaaacaaca 3803663  T
Q  385 tgtg 388  Q
    ||||    
T  3803664 tgtg 3803667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 328 - 403
Target Start/End: Original strand, 12252545 - 12252620
Alignment:
Q  328 cagttaactgccgaaggacattttagtactttacatgtgtttttcagccaaacagcatgtgtcaacaacaatactc 403  Q
    ||||||||||||||||||||||| |||| ||||  ||||||| ||| |||||    |||| |||||||||||||||    
T  12252545 cagttaactgccgaaggacatttgagtaatttatttgtgtttctcaaccaaatcaaatgtatcaacaacaatactc 12252620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 269 - 312
Target Start/End: Original strand, 25184834 - 25184877
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggt 312  Q
    ||||||||| |||||||||||||||| ||||||||| |||||||    
T  25184834 cagttaactaccgaggttttcctcggcagttaactgcagccggt 25184877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 269 - 312
Target Start/End: Complemental strand, 33222685 - 33222642
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggt 312  Q
    |||||||||||||| ||||||||||| ||||||||| |||||||    
T  33222685 cagttaactgccgaagttttcctcggcagttaactgcagccggt 33222642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 269 - 336
Target Start/End: Original strand, 34921763 - 34921830
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaact 336  Q
    ||||||||| |||||||||||||| | ||||||||| ||||||| || || || ||| ||||||||||    
T  34921763 cagttaactaccgaggttttcctcagcagttaactgcagccggtttttgaatttctcggcagttaact 34921830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 269 - 312
Target Start/End: Original strand, 41183228 - 41183271
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggt 312  Q
    ||||||||| |||||||||||||||| ||||||||| |||||||    
T  41183228 cagttaactaccgaggttttcctcggtagttaactgcagccggt 41183271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 269 - 311
Target Start/End: Complemental strand, 17424201 - 17424159
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccgg 311  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||    
T  17424201 cagttaactaccgaggttttcctcggcagttaactgcagccgg 17424159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 327 - 397
Target Start/End: Original strand, 38779702 - 38779772
Alignment:
Q  327 gcagttaactgccgaaggacattttagtactttacatgtgtttttcagccaaacagcatgtgtcaacaaca 397  Q
    ||||||||||||||| ||| ||||| ||  || |||||||||| ||||||||||   ||||||||||||||    
T  38779702 gcagttaactgccgagggatattttcgtctttcacatgtgtttctcagccaaaccaaatgtgtcaacaaca 38779772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 269 - 311
Target Start/End: Complemental strand, 43982268 - 43982226
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccgg 311  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||    
T  43982268 cagttaactaccgaggttttcctcggcagttaactgcagccgg 43982226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 284 - 341
Target Start/End: Complemental strand, 2648852 - 2648795
Alignment:
Q  284 gttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga 341  Q
    ||||||||||| ||||||||| ||||||| || || |||||  |||||||||||||||    
T  2648852 gttttcctcggtagttaactgcagccggtttttgaattccttggcagttaactgccga 2648795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 328 - 405
Target Start/End: Original strand, 16544679 - 16544756
Alignment:
Q  328 cagttaactgccgaaggacattttagtactttacatgtgtttttcagccaaacagcatgtgtcaacaacaatactctt 405  Q
    ||||||| || ||| |||||||| |||| ||||| |||||||||||  |||||   || |||||||||||||||||||    
T  16544679 cagttaattgtcgagggacatttgagtaatttacttgtgtttttcaatcaaaccaaatatgtcaacaacaatactctt 16544756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 269 - 310
Target Start/End: Original strand, 28477071 - 28477112
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccg 310  Q
    ||||||||| |||||||||||||||| ||||||||| |||||    
T  28477071 cagttaactaccgaggttttcctcggcagttaactgcagccg 28477112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 269 - 310
Target Start/End: Original strand, 31974251 - 31974292
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccg 310  Q
    ||||||||||||||| |||||||||| ||||||||| |||||    
T  31974251 cagttaactgccgagattttcctcggtagttaactgcagccg 31974292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 40055444 - 40055403
Alignment:
Q  271 gttaactgccgaggttttcctcggaagttaactgaagccggt 312  Q
    |||||||||| ||||||||||||| ||||||||| |||||||    
T  40055444 gttaactgccaaggttttcctcggtagttaactgcagccggt 40055403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 264 - 301
Target Start/End: Original strand, 41566164 - 41566201
Alignment:
Q  264 ttcgacagttaactgccgaggttttcctcggaagttaa 301  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  41566164 ttcgacagttaattgccgaggttttcctcggtagttaa 41566201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 225; Significance: 1e-123; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 48 - 403
Target Start/End: Original strand, 50604198 - 50604558
Alignment:
Q  48 ttcacttggttcgtatctagaaaaaataattaacttgc-----tcaattaaatatagaatttaacttcaatagaactttttaattgaccttctcagtgtg 142  Q
    |||||||||||| |||| | |||| |||||| ||||||     ||||||||||||| ||||||||||||||| |||||| ||||||||||||| ||||||    
T  50604198 ttcacttggttcttatccataaaagataattgacttgcgcagctcaattaaatatataatttaacttcaataaaactttctaattgaccttcttagtgtg 50604297  T
Q  143 tatagtgctaactaaaaatcttaaatcttaattacaatcaaataaatgggggcggaattaaagcaaaatgcattaatgactacaagatggaagaaaatgc 242  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||  ||||||||||||||    
T  50604298 tatagtgctaactaaaaatcttaaatcttaattacaatcaaatcaatgggggcataattaaagcaaaatgcattaatgactacagaatggaagaaaatgc 50604397  T
Q  243 tctacatgggtgaaactaaatttcgacagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccgaa 342  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||| ||| | | |||||||||||| ||| |||||||| |||    
T  50604398 tctacatgggtgaaactgaatttcggcagttaactgccgaggttttcctcggtagttaactgcagctgattttggacttcctcagcaattaactgctgaa 50604497  T
Q  343 ggacattttagtactttacatgtgtttttcagccaaacagcatgtgtcaacaacaatactc 403  Q
    ||  ||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||    
T  50604498 gggtattttagtattttacatgtgtttttcagccaaacaacatgtgtcaacagcaatactc 50604558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 48 - 405
Target Start/End: Original strand, 3112575 - 3112937
Alignment:
Q  48 ttcacttggttcgtatctagaaaaaataattaacttgctcaattaaatatagaatttaacttcaatagaactttttaattgaccttctcagtgtgtatag 147  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||| | |||||| |||||||||    
T  3112575 ttcacttggttcgtatcca-aaaaaataattgacttgctcaattaaatatagcatttaacttcaataaaactttttaattggcattctcattgtgtatag 3112673  T
Q  148 tgctaactaaaaatcttaaatcttaa-------ttacaatcaaataaatgggggcggaattaaagcaaaatgcattaatgactacaagatggaagaaaat 240  Q
    ||||||||||||||||||||||||||       |||||||||||| |||||||  | ||||||||||||||||||||||| ||||| |||||||||||||    
T  3112674 tgctaactaaaaatcttaaatcttaaatcttaattacaatcaaatcaatggggt-gaaattaaagcaaaatgcattaatggctacaggatggaagaaaat 3112772  T
Q  241 gctctacatgggtgaaactaaatttcgacagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccg 340  Q
    | || |||||| ||||||| ||||||| ||||||||||| |||||||||||||  | |||| || ||||||| |||||||||||| |||||||||| |||    
T  3112773 gttcaacatggatgaaactgaatttcggcagttaactgctgaggttttcctcgataattaattgcagccggttttggacttcctcggcagttaactaccg 3112872  T
Q  341 aaggacattttagtactttacatgtgtttttcagccaaacagcatgtgtcaacaacaatactctt 405  Q
    |||||||||||| || ||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  3112873 aaggacattttaatattttacatgtgtttttcagccaaacaacatgtgtgaacaacaatactctt 3112937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 248 - 405
Target Start/End: Original strand, 1294060 - 1294217
Alignment:
Q  248 atgggtgaaactaaatttcgacagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttc----ctctgcagttaactgccgaag 343  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| || |||| |    ||||     || ||||||||||||||| |    
T  1294060 atgggtgaaactgaatttcggcagttaactgccgaggttttcctcggaagttaactgcagtcggttt----cttcagaattcggcagttaactgccgagg 1294155  T
Q  344 gacattttagtactttacatgtgtttttcagccaaacagcatgtgtcaacaacaatactctt 405  Q
    |  ||||  ||| |||||  |||||| |||| |||||| ||||||||||||||||| |||||    
T  1294156 ggtatttgggtaatttactcgtgtttctcagtcaaacaacatgtgtcaacaacaattctctt 1294217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 269 - 405
Target Start/End: Complemental strand, 2743467 - 2743330
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga-aggacattttagtactttacatgtgt 367  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||  ||  | |||||| |||||||||||||||  ||| ||||  ||| ||||| |||||    
T  2743467 cagttaactcccgaggttttcctcggcagttaactgcagccggatttcaaattcctcggcagttaactgccgaggggatatttgggtaatttacttgtgt 2743368  T
Q  368 ttttcagccaaacagcatgtgtcaacaacaatactctt 405  Q
    || ||||||||||| ||||||  ||||||||| |||||    
T  2743367 ttctcagccaaacaacatgtgggaacaacaattctctt 2743330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 263 - 341
Target Start/End: Original strand, 7247858 - 7247936
Alignment:
Q  263 tttcgacagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga 341  Q
    ||||||||||||||| |||||||||||||||  ||||||||| |||||||  | || |||||| |||||||||||||||    
T  7247858 tttcgacagttaactaccgaggttttcctcgtcagttaactgcagccggttattgaattcctcggcagttaactgccga 7247936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 270 - 388
Target Start/End: Original strand, 45507402 - 45507520
Alignment:
Q  270 agttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccgaaggacattttagtactttacatgtgttt 369  Q
    ||||||||||||||||||||||||| ||||||||| ||||| | ||    |||||| ||||||||||  ||| ||| ||||| ||  |||| ||||||||    
T  45507402 agttaactgccgaggttttcctcggtagttaactgcagccgattttatttttcctcggcagttaactatcgagggatattttcgtcttttatatgtgttt 45507501  T
Q  370 ttcagccaaacagcatgtg 388  Q
     ||||||||||| ||||||    
T  45507502 ctcagccaaacaacatgtg 45507520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 264 - 371
Target Start/End: Original strand, 30839159 - 30839266
Alignment:
Q  264 ttcgacagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccgaaggacattttagtactttacat 363  Q
    |||| ||||||||||||||||||||||| || ||||||||| ||||||| ||| |||  |||  ||||||||||||||  |  ||||  ||| |||||||    
T  30839159 ttcggcagttaactgccgaggttttccttgggagttaactgcagccggttttgaactgtctcgacagttaactgccgagaggtatttgggtaatttacat 30839258  T
Q  364 gtgttttt 371  Q
    ||||||||    
T  30839259 gtgttttt 30839266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 284 - 386
Target Start/End: Complemental strand, 13743347 - 13743245
Alignment:
Q  284 gttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccgaaggacattttagtactttacatgtgtttttcagccaaacagc 383  Q
    ||||||||||| ||||||||| ||||||  ||  | |||||| ||||||||||||||| ||  ||||  ||| ||||||||||||| ||||||||||| |    
T  13743347 gttttcctcggcagttaactgcagccggatttcaaattcctcggcagttaactgccgaggggtatttgggtaatttacatgtgtttctcagccaaacaac 13743248  T
Q  384 atg 386  Q
    |||    
T  13743247 atg 13743245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 263 - 341
Target Start/End: Complemental strand, 19440331 - 19440253
Alignment:
Q  263 tttcgacagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga 341  Q
    ||||| ||||||||| |||||||||||||||| ||||||||| ||||||| |  || ||| || |||||||||||||||    
T  19440331 tttcggcagttaactaccgaggttttcctcggcagttaactgcagccggtttatgaattcttcggcagttaactgccga 19440253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 332 - 406
Target Start/End: Complemental strand, 32592223 - 32592149
Alignment:
Q  332 taactgccgaaggacattttagtactttacatgtgtttttcagccaaacagcatgtgtcaacaacaatactctta 406  Q
    |||||||||| |||||||| |||| |||||  |||||| ||||||||||   |||||||||||||||||||||||    
T  32592223 taactgccgagggacatttgagtaatttactcgtgtttctcagccaaaccaaatgtgtcaacaacaatactctta 32592149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 263 - 341
Target Start/End: Original strand, 41579722 - 41579800
Alignment:
Q  263 tttcgacagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga 341  Q
    ||||| ||||||||| |||||||||||||||| ||||||||| |||||||  | || |||||| ||| |||||||||||    
T  41579722 tttcggcagttaactaccgaggttttcctcggcagttaactgcagccggttattgaattcctcagcaattaactgccga 41579800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 19341598 - 19341670
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga 341  Q
    |||||||||||||| ||||||||||| ||||||||| ||||||  ||  | |||||| |||||||||||||||    
T  19341598 cagttaactgccgaagttttcctcggtagttaactgcagccggatttctaattcctcggcagttaactgccga 19341670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 263 - 399
Target Start/End: Complemental strand, 34645637 - 34645501
Alignment:
Q  263 tttcgacagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccgaaggacattttagtactttaca 362  Q
    ||||| |||||||||||||||||||||||||  ||||||||| || |||| ||| |    ||| ||||||||||||||||||| ||||  |||  ||||     
T  34645637 tttcggcagttaactgccgaggttttcctcgagagttaactgcagtcggttttgaagaaactcggcagttaactgccgaaggatatttaggtaaattact 34645538  T
Q  363 tgtgtttttcagccaaacagcatgtgtcaacaacaat 399  Q
     |||||| ||||||||     ||||||||||||||||    
T  34645537 cgtgtttctcagccaaggtaaatgtgtcaacaacaat 34645501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 41803067 - 41802995
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga 341  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||| ||  | ||| || |||||||||||||||    
T  41803067 cagttaactaccgaggttttcctcggcagttaactgcagccggtttttaaattcttcggcagttaactgccga 41802995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 48250873 - 48250945
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga 341  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||  ||  | |||||| |||||||||||||||    
T  48250873 cagttaactcccgaggttttcctcggcagttaactgcagccggaattcaaattcctcagcagttaactgccga 48250945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 269 - 312
Target Start/End: Original strand, 34712763 - 34712806
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggt 312  Q
    |||||||||||||||||||||||||| ||||||||| |||||||    
T  34712763 cagttaactgccgaggttttcctcgggagttaactgcagccggt 34712806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 263 - 341
Target Start/End: Original strand, 41805673 - 41805751
Alignment:
Q  263 tttcgacagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga 341  Q
    |||||||| |||||| |||||||||||||||| |||||| || ||||||||||  | ||| ||  ||||||||||||||    
T  41805673 tttcgacaattaactcccgaggttttcctcggcagttaattgcagccggtctttaaattcttcgacagttaactgccga 41805751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 265 - 311
Target Start/End: Complemental strand, 55385210 - 55385164
Alignment:
Q  265 tcgacagttaactgccgaggttttcctcggaagttaactgaagccgg 311  Q
    ||||||||||||| |||||||||||||||| ||||||||| ||||||    
T  55385210 tcgacagttaactaccgaggttttcctcggcagttaactgcagccgg 55385164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 272 - 341
Target Start/End: Complemental strand, 46345003 - 46344934
Alignment:
Q  272 ttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga 341  Q
    |||||| |||||||||||||||| ||||||||| ||||| | || || ||||||  ||||||||||||||    
T  46345003 ttaactaccgaggttttcctcggcagttaactgcagccgatttttgaattcctcgacagttaactgccga 46344934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 4002509 - 4002581
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga 341  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||  ||  | |||||| | |||||||||||||    
T  4002509 cagttaactcccgaggttttcctcggcagttaactgcagccggatttcaaattcctcagtagttaactgccga 4002581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 28611104 - 28611176
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga 341  Q
    ||||||||| |||  ||||||||||| ||||||||| ||||||| || || || ||| |||||||||||||||    
T  28611104 cagttaactaccgttgttttcctcggcagttaactgcagccggtttttgaatttctcggcagttaactgccga 28611176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 34691694 - 34691622
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga 341  Q
    ||||||||| |||||||||||||||  ||||||||| ||||||  ||  | |||||| |||||||||||||||    
T  34691694 cagttaactaccgaggttttcctcgacagttaactgcagccggatttttatttcctcggcagttaactgccga 34691622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 52570570 - 52570642
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga 341  Q
    ||||||||| |||||||||| ||||| ||||||||| || |||| || || ||| || |||||||||||||||    
T  52570570 cagttaactaccgaggtttttctcggtagttaactgcagtcggtttttgaattcttcggcagttaactgccga 52570642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 269 - 312
Target Start/End: Complemental strand, 6143740 - 6143697
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggt 312  Q
    |||||||||||||| ||||||||||| ||||||||| |||||||    
T  6143740 cagttaactgccgaagttttcctcggcagttaactgcagccggt 6143697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 269 - 304
Target Start/End: Complemental strand, 8156577 - 8156542
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactg 304  Q
    |||||||||||||||||||||||||| |||||||||    
T  8156577 cagttaactgccgaggttttcctcggcagttaactg 8156542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 269 - 336
Target Start/End: Original strand, 30256007 - 30256074
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaact 336  Q
    |||||||||  ||||||||||||||| ||||||||| ||||||| ||  | |||||| ||||||||||    
T  30256007 cagttaactatcgaggttttcctcggcagttaactgcagccggttttttaattcctcggcagttaact 30256074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 269 - 304
Target Start/End: Complemental strand, 34712302 - 34712267
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactg 304  Q
    |||||||||||||||||||||||||| |||||||||    
T  34712302 cagttaactgccgaggttttcctcggtagttaactg 34712267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 269 - 311
Target Start/End: Original strand, 2647703 - 2647745
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccgg 311  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||    
T  2647703 cagttaactaccgaggttttcctcggcagttaactgcagccgg 2647745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 270 - 312
Target Start/End: Original strand, 6144303 - 6144345
Alignment:
Q  270 agttaactgccgaggttttcctcggaagttaactgaagccggt 312  Q
    ||||||||||||| ||||||||||| ||||||||| |||||||    
T  6144303 agttaactgccgaagttttcctcggtagttaactgcagccggt 6144345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 269 - 311
Target Start/End: Original strand, 20918015 - 20918057
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccgg 311  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||    
T  20918015 cagttaactaccgaggttttcctcggcagttaactgtagccgg 20918057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 269 - 311
Target Start/End: Original strand, 20926977 - 20927019
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccgg 311  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||    
T  20926977 cagttaactaccgaggttttcctcggcagttaactgtagccgg 20927019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 270 - 312
Target Start/End: Original strand, 21343499 - 21343541
Alignment:
Q  270 agttaactgccgaggttttcctcggaagttaactgaagccggt 312  Q
    ||||||||||||| ||||||||||| ||||||||| |||||||    
T  21343499 agttaactgccgaagttttcctcggtagttaactgcagccggt 21343541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 269 - 311
Target Start/End: Complemental strand, 34049149 - 34049107
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccgg 311  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||    
T  34049149 cagttaactaccgaggttttcctcggcagttaactgcagccgg 34049107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 269 - 311
Target Start/End: Complemental strand, 43476261 - 43476219
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccgg 311  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||    
T  43476261 cagttaactaccgaggttttcctcggcagttaactgcagccgg 43476219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 269 - 311
Target Start/End: Complemental strand, 46989616 - 46989574
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccgg 311  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||    
T  46989616 cagttaactaccgaggttttcctcggcagttaactgcagccgg 46989574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 269 - 311
Target Start/End: Complemental strand, 54389864 - 54389822
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccgg 311  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||    
T  54389864 cagttaactaccgaggttttcctcggcagttaactgcagccgg 54389822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 269 - 310
Target Start/End: Original strand, 14043902 - 14043943
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccg 310  Q
    |||||||||||||| ||||||||||| ||||||||| |||||    
T  14043902 cagttaactgccgaagttttcctcggcagttaactgcagccg 14043943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 269 - 378
Target Start/End: Complemental strand, 24700790 - 24700681
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccgaaggacattttagtactttacatgtgtt 368  Q
    ||||||||| |||||| ||||||||| ||||||||| | ||||  ||  | ||||||  |||||||||||||| |  ||||| |||| |||||  |||||    
T  24700790 cagttaactaccgaggatttcctcgggagttaactgcaaccggatttctaattcctcgacagttaactgccgatgagcatttgagtaatttactcgtgtt 24700691  T
Q  369 tttcagccaa 378  Q
    | ||||||||    
T  24700690 tctcagccaa 24700681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 198; Significance: 1e-107; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 68 - 403
Target Start/End: Complemental strand, 26237784 - 26237457
Alignment:
Q  68 aaaaaataattaacttgctcaattaaatatagaatttaacttcaatagaactttttaattgaccttctcagtgtgtatagtgctaactaaaaatcttaaa 167  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  26237784 aaaaaataattaacttgctcaattaaatatagcatttaacttcaataaaactttctaattgaccttctcactgtgtatagtgctaactaaaaatcttaaa 26237685  T
Q  168 tcttaattacaatcaaataaatgggggcggaattaaagcaaaatgcattaatgactacaagatggaagaaaatgctctacatgggtgaaactaaatttcg 267  Q
    |||||||||||||||||| ||| |||| | ||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||| | | |||||||    
T  26237684 tcttaattacaatcaaatcaat-ggggtgaaattaaaacaaaatgcattaatggctacatgatggaagaaaatgctctacatgggtgagattgaatttcg 26237586  T
Q  268 acagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccgaaggacattttagtactttacatgtgt 367  Q
     ||||||       |||||||| |||| ||||| | | ||| ||| |||||||||||| ||||||||||| ||||||||||||||||| |||||||||||    
T  26237585 gcagtta-------aggttttcatcggtagttatcagcagcaggttttggacttcctcagcagttaactgtcgaaggacattttagtattttacatgtgt 26237493  T
Q  368 ttttcagccaaacagcatgtgtcaacaacaatactc 403  Q
    |||||||||||||| |||| ||||||||||||||||    
T  26237492 ttttcagccaaacaacatgcgtcaacaacaatactc 26237457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 255 - 394
Target Start/End: Complemental strand, 38330599 - 38330461
Alignment:
Q  255 aaactaaatttcgacagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccgaaggacattttagt 354  Q
    ||||| |||||||  ||||||||||||||||||||||| | ||||||||| ||||||| || ||||||||| | |||||||||| | ||  |||||||||    
T  38330599 aaactgaatttcggtagttaactgccgaggttttcctcagtagttaactgcagccggttttagacttcctcggtagttaactgcagcagagcattttagt 38330500  T
Q  355 actttacatgtgtttttcagccaaacagcatgtgtcaaca 394  Q
    | ||||||||||||| ||| |||||||  |||||||||||    
T  38330499 attttacatgtgtttctcaaccaaaca-aatgtgtcaaca 38330461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 248 - 394
Target Start/End: Original strand, 38331030 - 38331166
Alignment:
Q  248 atgggtgaaactaaatttcgacagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccgaaggaca 347  Q
    |||||||||||| ||||||| |||||||||||||||||           |||||||| ||||||| |||||||||||| |||||||||||| ||||| ||    
T  38331030 atgggtgaaactgaatttcggcagttaactgccgaggtg----------gttaactgcagccggttttggacttcctcggcagttaactgcagaagggca 38331119  T
Q  348 ttttagtactttacatgtgtttttcagccaaacagcatgtgtcaaca 394  Q
    |||| ||| ||||||||||||| |||||||||||  |||||||||||    
T  38331120 ttttggtattttacatgtgtttctcagccaaacaagatgtgtcaaca 38331166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 280 - 404
Target Start/End: Original strand, 27412333 - 27412457
Alignment:
Q  280 cgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccgaaggacattttagtactttacatgtgtttttcagccaaa 379  Q
    ||||||||||||||  ||||||||  ||||||| || ||||||||| ||||| | ||| |||||||||||||| || ||||||||||||||||||| |||    
T  27412333 cgaggttttcctcgacagttaactacagccggttttagacttcctcggcagtaagctgtcgaaggacattttaatattttacatgtgtttttcagctaaa 27412432  T
Q  380 cagcatgtgtcaacaacaatactct 404  Q
     |  ||||||| |||||||||||||    
T  27412433 taagatgtgtcgacaacaatactct 27412457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 252 - 376
Target Start/End: Original strand, 40039671 - 40039795
Alignment:
Q  252 gtgaaactaaatttcgacagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccgaaggacatttt 351  Q
    |||||||| ||||||| |||||||||  ||||||||||||||| ||||||||| || || | ||||||||||||  |||||||||  ||||||  |||||    
T  40039671 gtgaaactgaatttcggcagttaactatcgaggttttcctcggtagttaactgcagtcgattttggacttcctcgacagttaactatcgaagggtatttt 40039770  T
Q  352 agtactttacatgtgtttttcagcc 376  Q
     ||  ||||||||||||| ||||||    
T  40039771 tgtcttttacatgtgtttatcagcc 40039795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 253 - 376
Target Start/End: Complemental strand, 40039211 - 40039088
Alignment:
Q  253 tgaaactaaatttcgacagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccgaaggacatttta 352  Q
    ||||||| ||||||| ||||||||| |||||||||||||||| ||||||||| ||| | | |||||||||||| | | ||||||   || ||  |||||     
T  40039211 tgaaactgaatttcggcagttaacttccgaggttttcctcggtagttaactgcagctgattttggacttcctcggtaattaactattgaggggtattttc 40039112  T
Q  353 gtactttacatgtgtttttcagcc 376  Q
    ||  ||||||||||||||||||||    
T  40039111 gtcttttacatgtgtttttcagcc 40039088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 263 - 344
Target Start/End: Complemental strand, 18438709 - 18438628
Alignment:
Q  263 tttcgacagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccgaagg 344  Q
    ||||| ||||||||| |||||||||||||||| ||||||||| |||||||  | || ||||||  |||||||||||||||||    
T  18438709 tttcggcagttaactcccgaggttttcctcggcagttaactgcagccggttattgaattcctcaacagttaactgccgaagg 18438628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 270 - 403
Target Start/End: Complemental strand, 28694146 - 28694013
Alignment:
Q  270 agttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccgaaggacattttagtactttacatgtgttt 369  Q
    ||||||||| ||||||||||||||| ||||||||| ||||||| ||      | || ||||||||||||||| |||||||| |||| |||||  ||||||    
T  28694146 agttaactggcgaggttttcctcggcagttaactgcagccggttttactaaacttcggcagttaactgccgagggacatttgagtaatttactcgtgttt 28694047  T
Q  370 ttcagccaaacagcatgtgtcaacaacaatactc 403  Q
     ||| ||||||   ||||||||||| ||||||||    
T  28694046 ctcaaccaaactaaatgtgtcaacagcaatactc 28694013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 264 - 372
Target Start/End: Complemental strand, 32382774 - 32382666
Alignment:
Q  264 ttcgacagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccgaaggacattttagtactttacat 363  Q
    |||||||||||| |||||||||||||||| | ||||||||| ||||||| ||| |||  |||  |||||||||||||| ||  |||| | ||  ||||||    
T  32382774 ttcgacagttaattgccgaggttttcctcagtagttaactgcagccggttttgaactgtctcgacagttaactgccgatgggtatttgaataacttacat 32382675  T
Q  364 gtgtttttc 372  Q
    |||||||||    
T  32382674 gtgtttttc 32382666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 264 - 372
Target Start/End: Complemental strand, 32436729 - 32436621
Alignment:
Q  264 ttcgacagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccgaaggacattttagtactttacat 363  Q
    |||||||||||| |||||||||||||||| | ||||||||| ||||||| ||| |||  |||  |||||||||||||| ||  |||| | ||  ||||||    
T  32436729 ttcgacagttaattgccgaggttttcctcagtagttaactgcagccggttttgaactgtctcgacagttaactgccgatgggtatttgaataacttacat 32436630  T
Q  364 gtgtttttc 372  Q
    |||||||||    
T  32436629 gtgtttttc 32436621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 327 - 403
Target Start/End: Complemental strand, 13782246 - 13782170
Alignment:
Q  327 gcagttaactgccgaaggacattttagtactttacatgtgtttttcagccaaacagcatgtgtcaacaacaatactc 403  Q
    ||||||||||||||| |||||||| |||| |||||  |||||| |||||||||    ||||||||||||||||||||    
T  13782246 gcagttaactgccgagggacatttaagtaatttactcgtgtttctcagccaaatcaaatgtgtcaacaacaatactc 13782170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 13783107 - 13783155
Alignment:
Q  264 ttcgacagttaactgccgaggttttcctcggaagttaactgaagccggt 312  Q
    ||||||||||||||||||| ||||||||||| ||||||||| |||||||    
T  13783107 ttcgacagttaactgccgaagttttcctcggcagttaactgcagccggt 13783155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 42602529 - 42602457
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga 341  Q
    ||||||||| |||||||||||||||| ||||||||| | ||||| || || ||| || |||||||||||||||    
T  42602529 cagttaactaccgaggttttcctcggcagttaactgcatccggtttttgaattcttcggcagttaactgccga 42602457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 269 - 311
Target Start/End: Complemental strand, 34366980 - 34366938
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccgg 311  Q
    ||||||||| |||||||||||||||||||||||||| ||||||    
T  34366980 cagttaactaccgaggttttcctcggaagttaactgcagccgg 34366938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 269 - 338
Target Start/End: Complemental strand, 21406336 - 21406267
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgc 338  Q
    ||||||||| |||| ||||||||||| ||||||||| ||||||| |  || |||||| ||||||||||||    
T  21406336 cagttaactaccgaagttttcctcggtagttaactgcagccggtttatgaattcctcggcagttaactgc 21406267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 269 - 338
Target Start/End: Complemental strand, 21800828 - 21800759
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgc 338  Q
    ||||||||| |||| ||||||||||| ||||||||| ||||||| |  || |||||| ||||||||||||    
T  21800828 cagttaactaccgaagttttcctcggtagttaactgcagccggtttatgaattcctcggcagttaactgc 21800759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 330 - 398
Target Start/End: Complemental strand, 4174095 - 4174027
Alignment:
Q  330 gttaactgccgaaggacattttagtactttacatgtgtttttcagccaaacagcatgtgtcaacaacaa 398  Q
    ||||||| ||||| || ||||||||| |||||  |||||| ||||||||||  ||||||||||||||||    
T  4174095 gttaactaccgaaagatattttagtattttacccgtgtttctcagccaaaccacatgtgtcaacaacaa 4174027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 18205855 - 18205783
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga 341  Q
    ||||||||| ||||||||||||| || ||||||||| ||||||| || || ||| || ||||||||| |||||    
T  18205855 cagttaactaccgaggttttccttggcagttaactgcagccggtttttgaattcttcggcagttaaccgccga 18205783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 35962376 - 35962304
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga 341  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||  ||  | ||||||  ||||||||||||||    
T  35962376 cagttaactcccgaggttttcctcggcagttaactgtagccggatttcaaattcctcgacagttaactgccga 35962304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 320 - 399
Target Start/End: Original strand, 35555227 - 35555306
Alignment:
Q  320 ttcctctgcagttaactgccgaaggacattttagtactttacatgtgtttttcagccaaacagcatgtgtcaacaacaat 399  Q
    |||||| |||||||||| |||| ||  ||||| ||| ||||| ||||||| |||||| ||||  ||||||||||||||||    
T  35555227 ttcctcggcagttaactaccgaggggtattttggtattttacttgtgtttctcagcctaacaagatgtgtcaacaacaat 35555306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 328 - 403
Target Start/End: Original strand, 38134175 - 38134250
Alignment:
Q  328 cagttaactgccgaaggacattttagtactttacatgtgtttttcagccaaacagcatgtgtcaacaacaatactc 403  Q
    |||||||||||||| || ||||| |||| ||||| ||||| | ||||||||||   |||||| |||||||||||||    
T  38134175 cagttaactgccgatgggcatttgagtaatttacttgtgtctctcagccaaaccaaatgtgtaaacaacaatactc 38134250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 269 - 312
Target Start/End: Complemental strand, 40740975 - 40740932
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggt 312  Q
    |||||||||||||| ||||||||||| ||||||||| |||||||    
T  40740975 cagttaactgccgaagttttcctcggcagttaactgcagccggt 40740932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 270 - 341
Target Start/End: Complemental strand, 41855436 - 41855365
Alignment:
Q  270 agttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga 341  Q
    |||||||| |||||||||||||||| ||||||||| ||||| | || || ||| ||  ||||||||||||||    
T  41855436 agttaactaccgaggttttcctcggcagttaactgcagccgatttttgaattcttcgacagttaactgccga 41855365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 269 - 311
Target Start/End: Original strand, 22550869 - 22550911
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccgg 311  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||    
T  22550869 cagttaactaccgaggttttcctcggcagttaactgcagccgg 22550911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 264 - 310
Target Start/End: Original strand, 32383204 - 32383250
Alignment:
Q  264 ttcgacagttaactgccgaggttttcctcggaagttaactgaagccg 310  Q
    |||| ||||||||| |||||||||||||||| ||||||||| |||||    
T  32383204 ttcggcagttaactaccgaggttttcctcggtagttaactgcagccg 32383250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 264 - 310
Target Start/End: Original strand, 32437159 - 32437205
Alignment:
Q  264 ttcgacagttaactgccgaggttttcctcggaagttaactgaagccg 310  Q
    |||| ||||||||| |||||||||||||||| ||||||||| |||||    
T  32437159 ttcggcagttaactaccgaggttttcctcggtagttaactgcagccg 32437205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 327 - 405
Target Start/End: Original strand, 39208403 - 39208481
Alignment:
Q  327 gcagttaactgccgaaggacattttagtactttacatgtgtttttcagccaaacagcatgtgtcaacaacaatactctt 405  Q
    ||||||||||  |||||||||||| |||| |||||  |||||||||||| | ||   |||| |||||||||||||||||    
T  39208403 gcagttaactatcgaaggacatttgagtaatttactcgtgtttttcagcaataccaaatgtatcaacaacaatactctt 39208481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 269 - 311
Target Start/End: Complemental strand, 39601773 - 39601731
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccgg 311  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||    
T  39601773 cagttaactcccgaggttttcctcggcagttaactgcagccgg 39601731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 330 - 399
Target Start/End: Original strand, 4395043 - 4395112
Alignment:
Q  330 gttaactgccgaaggacattttagtactttacatgtgtttttcagccaaacagcatgtgtcaacaacaat 399  Q
    ||||||||||||  |||||||| ||  ||||||||||||| ||||||||||   ||| ||||||||||||    
T  4395043 gttaactgccgagagacatttttgtcttttacatgtgtttctcagccaaaccaaatgcgtcaacaacaat 4395112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 265 - 341
Target Start/End: Original strand, 41858123 - 41858197
Alignment:
Q  265 tcgacagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga 341  Q
    ||||||||||||| ||||||||  |||||| ||||||||| ||||||| || || ||| ||  ||||||||||||||    
T  41858123 tcgacagttaactcccgaggtt--cctcggcagttaactgcagccggtttttgaattcttcgccagttaactgccga 41858197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 138; Significance: 1e-71; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 49 - 256
Target Start/End: Original strand, 4434125 - 4434328
Alignment:
Q  49 tcacttggttcgtatctagaaaaaataattaacttgctcaattaaatatagaatttaacttcaatagaactttttaattgaccttctcagtgtgtatagt 148  Q
    |||||||||||||||| ||||||||||||| | |||||||||||||||||| |||||||||||||| |||||| |||||||||||   | ||||||||||    
T  4434125 tcacttggttcgtatccagaaaaaataattgatttgctcaattaaatatagtatttaacttcaataaaactttctaattgacctt---actgtgtatagt 4434221  T
Q  149 gctaactaaaaatcttaaatcttaattacaatcaaataaatgggggcggaattaaagcaaaatgcattaatgactacaagatggaagaaaatgctctaca 248  Q
    || |||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  4434222 gcaaactaaaaatcttaaatcttaattacaatcaaatcaat-ggggcgaaattaaagcaaaatgcattaatggctacaggatggaagaaaatgctctaca 4434320  T
Q  249 tgggtgaa 256  Q
    ||||||||    
T  4434321 tgggtgaa 4434328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 296 - 403
Target Start/End: Original strand, 4434333 - 4434441
Alignment:
Q  296 agttaactgaagccggtcttggacttcctctgcagttaactgccgaaggacattttagtactttacatgtg-tttttcagccaaacagcatgtgtcaaca 394  Q
    ||||||||| ||||||| |||||||||||| ||||||||||| | |||| |||||||||| |||||||||| ||||| ||||||||| ||||||||||||    
T  4434333 agttaactgcagccggttttggacttcctcggcagttaactgtcaaagggcattttagtattttacatgtgtttttttagccaaacaacatgtgtcaaca 4434432  T
Q  395 acaatactc 403  Q
    |||||||||    
T  4434433 acaatactc 4434441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 248 - 399
Target Start/End: Original strand, 13838407 - 13838558
Alignment:
Q  248 atgggtgaaactaaatttcgacagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttc----ctctgcagttaactgccgaag 343  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||| ||||||| |    ||||     || ||||||||||||||| |    
T  13838407 atgggtgaaactgaatttcggcagttaactgccgaggttttcctcggtagttaactgcagccggttt----cttcagaattcggcagttaactgccgagg 13838502  T
Q  344 gacattttagtactttacatgtgtttttcagccaaacagcatgtgtcaacaacaat 399  Q
    |  ||||  ||| |||||  |||||| ||||||||||| |||||||||||| ||||    
T  13838503 ggtatttgggtaatttactcgtgtttctcagccaaacaacatgtgtcaacagcaat 13838558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 269 - 391
Target Start/End: Original strand, 27532621 - 27532743
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccgaaggacattttagtactttacatgtgtt 368  Q
    |||||||||||||||||||||||||  ||||||||| || | || ||    |||||| ||||||||||| ||| ||  ||||| ||| ||||||||||||    
T  27532621 cagttaactgccgaggttttcctcgatagttaactgcagtcagttttatttttcctcggcagttaactgtcgaggggtattttggtattttacatgtgtt 27532720  T
Q  369 tttcagccaaacagcatgtgtca 391  Q
    | ||| ||||||| |||||||||    
T  27532721 tctcatccaaacaacatgtgtca 27532743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 266 - 399
Target Start/End: Complemental strand, 27531994 - 27531861
Alignment:
Q  266 cgacagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccgaaggacattttagtactttacatgt 365  Q
    ||||||||||||||||||||||||||| ||||||||||| ||| | | ||    ||||||  ||||||| |  ||| | ||||||| ||  |||| ||||    
T  27531994 cgacagttaactgccgaggttttcctctgaagttaactgcagctgattttatttttcctcgacagttaattatcgaggaacattttcgtcttttatatgt 27531895  T
Q  366 gtttttcagccaaacagcatgtgtcaacaacaat 399  Q
    |||| ||||||||||| |||||||  ||||||||    
T  27531894 gtttctcagccaaacaacatgtgtatacaacaat 27531861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 41201803 - 41201754
Alignment:
Q  263 tttcgacagttaactgccgaggttttcctcggaagttaactgaagccggt 312  Q
    ||||||||||||||| |||||||||||||||| ||||||||| |||||||    
T  41201803 tttcgacagttaactaccgaggttttcctcggcagttaactgcagccggt 41201754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 269 - 404
Target Start/End: Complemental strand, 7017581 - 7017445
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccgaaggac-attttagtactttacatgtgt 367  Q
    ||||||||| ||||||||||||| |  ||||||||| ||||||  ||  | |||||| ||||||||||  ||| ||   ||||  ||| ||||| |||||    
T  7017581 cagttaactaccgaggttttccttgagagttaactgcagccggatttcaaattcctcagcagttaactatcgagggggtatttgggtaatttacttgtgt 7017482  T
Q  368 ttttcagccaaacagcatgtgtcaacaacaatactct 404  Q
    |||||||||||||| |||||| |||||||||| ||||    
T  7017481 ttttcagccaaacaacatgtggcaacaacaattctct 7017445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 320 - 404
Target Start/End: Original strand, 34080127 - 34080211
Alignment:
Q  320 ttcctctgcagttaactgccgaaggacattttagtactttacatgtgtttttcagccaaacagcatgtgtcaacaacaatactct 404  Q
    |||||||||||||||||||||| ||  ||||  ||| ||||| ||||||| |||||||| || |||||||||||| |||| ||||    
T  34080127 ttcctctgcagttaactgccgaggggtatttgggtaatttacttgtgtttatcagccaaccaacatgtgtcaacagcaattctct 34080211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 327 - 403
Target Start/End: Complemental strand, 41622184 - 41622108
Alignment:
Q  327 gcagttaactgccgaaggacattttagtactttacatgtgtttttcagccaaacagcatgtgtcaacaacaatactc 403  Q
    ||||||||||||||| |||||||| |||| |||||  |||||| |||| |||||   ||||||||||||||||||||    
T  41622184 gcagttaactgccgatggacatttgagtaatttactcgtgtttctcagtcaaactaaatgtgtcaacaacaatactc 41622108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 269 - 344
Target Start/End: Complemental strand, 34122593 - 34122518
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccgaagg 344  Q
    ||||||||| ||||| |||||||||| ||||||||| ||||||  ||  | |||||| ||||||||||||||||||    
T  34122593 cagttaactaccgagcttttcctcggcagttaactgcagccggatttcaaattcctcggcagttaactgccgaagg 34122518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 270 - 337
Target Start/End: Complemental strand, 34682325 - 34682258
Alignment:
Q  270 agttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactg 337  Q
    |||||||| |||||||||||||||| ||||||||| ||||||| || || ||||||  ||||||||||    
T  34682325 agttaactcccgaggttttcctcggcagttaactgcagccggtttttgaattcctcgacagttaactg 34682258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 263 - 337
Target Start/End: Original strand, 3603146 - 3603220
Alignment:
Q  263 tttcgacagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactg 337  Q
    ||||| ||||||||| |||||||||||||||||||||||||| |||| ||  | || ||| || |||||||||||    
T  3603146 tttcggcagttaactaccgaggttttcctcggaagttaactgcagccagttattgaattcttcggcagttaactg 3603220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 264 - 345
Target Start/End: Complemental strand, 1398678 - 1398597
Alignment:
Q  264 ttcgacagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccgaagga 345  Q
    |||||||||||||| ||||||||||||| ||  |||||||| | |||||  | || |||||| ||||||||||| |||||||    
T  1398678 ttcgacagttaactaccgaggttttccttggctgttaactgcaaccggttattgaattcctcggcagttaactgtcgaagga 1398597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 269 - 345
Target Start/End: Complemental strand, 18307323 - 18307247
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccgaagga 345  Q
    ||||||||| |||||||||||||||| ||||||||  ||||| | ||  | ||||||  ||||||||||||||||||    
T  18307323 cagttaactaccgaggttttcctcggcagttaactacagccgattttttaattcctcgacagttaactgccgaagga 18307247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 18538339 - 18538411
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga 341  Q
    ||||||||| |||| ||||||||||| ||||||||| ||||||| || || ||||||  || |||||||||||    
T  18538339 cagttaactaccgaagttttcctcggcagttaactgcagccggtttttgaattcctcgacaattaactgccga 18538411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 270 - 338
Target Start/End: Complemental strand, 29430090 - 29430022
Alignment:
Q  270 agttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgc 338  Q
    ||||||||||||||||||||||||| | ||||||| ||||||| ||    |||||| ||||||||||||    
T  29430090 agttaactgccgaggttttcctcggcacttaactgcagccggttttatttttcctcggcagttaactgc 29430022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 270 - 338
Target Start/End: Original strand, 29430583 - 29430651
Alignment:
Q  270 agttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgc 338  Q
    ||||||||||||||||||||||| | ||||||||| ||||||| ||    |||||| ||||||||||||    
T  29430583 agttaactgccgaggttttcctcagcagttaactgcagccggttttatttttcctcggcagttaactgc 29430651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 265 - 304
Target Start/End: Complemental strand, 11346080 - 11346041
Alignment:
Q  265 tcgacagttaactgccgaggttttcctcggaagttaactg 304  Q
    ||||||||||||| |||||||||||||||| |||||||||    
T  11346080 tcgacagttaactaccgaggttttcctcggcagttaactg 11346041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 269 - 304
Target Start/End: Complemental strand, 28876712 - 28876677
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactg 304  Q
    |||||||||||||||||||||||||| |||||||||    
T  28876712 cagttaactgccgaggttttcctcgggagttaactg 28876677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 269 - 312
Target Start/End: Complemental strand, 35926431 - 35926388
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggt 312  Q
    ||||||||| |||||||||||||||| ||||||||| |||||||    
T  35926431 cagttaactaccgaggttttcctcggtagttaactgtagccggt 35926388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 269 - 311
Target Start/End: Original strand, 19037474 - 19037516
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccgg 311  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||    
T  19037474 cagttaactaccgaggttttcctcggcagttaactgcagccgg 19037516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 327 - 388
Target Start/End: Complemental strand, 13563678 - 13563617
Alignment:
Q  327 gcagttaactgccgaaggacattttagtactttacatgtgtttttcagccaaacagcatgtg 388  Q
    ||||||||||||||| ||  ||||  ||| ||||||||||||| ||||||||||| ||||||    
T  13563678 gcagttaactgccgaggggtatttgggtaatttacatgtgtttctcagccaaacaacatgtg 13563617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 264 - 341
Target Start/End: Original strand, 28388518 - 28388595
Alignment:
Q  264 ttcgacagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga 341  Q
    |||| ||||||||| |||||||||||||||| ||||||||| ||| ||  ||  | |||||| |||| ||||||||||    
T  28388518 ttcggcagttaactaccgaggttttcctcggcagttaactgcagctggatttcaaattcctcggcagctaactgccga 28388595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 271 - 304
Target Start/End: Original strand, 39743154 - 39743187
Alignment:
Q  271 gttaactgccgaggttttcctcggaagttaactg 304  Q
    |||||||||||||||||||||||| |||||||||    
T  39743154 gttaactgccgaggttttcctcggcagttaactg 39743187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 4e-37; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 53 - 164
Target Start/End: Complemental strand, 49697798 - 49697687
Alignment:
Q  53 ttggttcgtatctagaaaaaataattaacttgctcaattaaatatagaatttaacttcaatagaactttttaattgaccttctcagtgtgtatagtgcta 152  Q
    |||||||||||| |||||||||||||  ||||||||||||||||||| |||||||||||||| |||||| |||| |||||||||| ||||||||||||||    
T  49697798 ttggttcgtatcgagaaaaaataattggcttgctcaattaaatatagcatttaacttcaataaaactttctaatcgaccttctcactgtgtatagtgcta 49697699  T
Q  153 actaaaaatctt 164  Q
    ||||||||||||    
T  49697698 actaaaaatctt 49697687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 197 - 403
Target Start/End: Complemental strand, 49697683 - 49697465
Alignment:
Q  197 gaattaaagcaaaatgcattaatgactacaagatggaagaaaatgctctacatgggtgaaactaaatttcgacagttaactgccgag----gttttcctc 292  Q
    ||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||     ||||| |||    
T  49697683 gaattaaagcaaaatacattaatggctacatgatggaagaaaatgctctacatgggcgaaactgaatttcggcagttaactgccgaaaaatgtttttctc 49697584  T
Q  293 ggaagttaactgaagccggtcttggactt--------cctctgcagttaactgccgaaggacattttagtactttacatgtgtttttcagccaaacagca 384  Q
    |  ||||||||| ||||| | ||||||||        ||||  |||||||||| |||| |||||||||||| ||||||||||||||| ||||||||| ||    
T  49697583 gatagttaactgcagccgattttggacttcctcgactcctcgacagttaactgtcgaaagacattttagtattttacatgtgttttttagccaaacaaca 49697484  T
Q  385 tgtgtcaacaacaatactc 403  Q
     ||| ||| || |||||||    
T  49697483 cgtgccaagaataatactc 49697465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 267 - 399
Target Start/End: Original strand, 41459213 - 41459345
Alignment:
Q  267 gacagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccgaaggacattttagtactttacatgtg 366  Q
    |||||||||||||||||||||||||||| ||||||||| ||| ||| ||    |||||| ||||||||||| ||| ||  ||||| ||| ||||||||||    
T  41459213 gacagttaactgccgaggttttcctcggtagttaactgcagctggttttatttttcctcggcagttaactgtcgaggggtattttggtattttacatgtg 41459312  T
Q  367 tttttcagccaaacagcatgtgtcaacaacaat 399  Q
    ||| ||||||||||| ||||||| | |||||||    
T  41459313 tttctcagccaaacaacatgtgttatcaacaat 41459345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 269 - 404
Target Start/End: Original strand, 44470015 - 44470150
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccgaaggacattttagtactttacatgtgtt 368  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||  ||  | |||||| ||||||||||||||| ||  ||||   || |||| |||||||    
T  44470015 cagttaactcccgaggttttcctcggcagttaactgcagccggatttcaaattcctcggcagttaactgccgaggggtatttggataatttaaatgtgtt 44470114  T
Q  369 tttcagccaaacagcatgtgtcaacaacaatactct 404  Q
    | ||||||||||| |||||||||||| |||| ||||    
T  44470115 tctcagccaaacaacatgtgtcaacagcaattctct 44470150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 269 - 370
Target Start/End: Original strand, 24364729 - 24364830
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccgaaggacattttagtactttacatgtgtt 368  Q
    |||||||||| ||||||||||||| | ||||||||| | ||| | ||  || ||||| ||||||||||||||||| ||||||||||| ||||||||||||    
T  24364729 cagttaactgtcgaggttttcctcagtagttaactgcaaccgattttaaacctcctcggcagttaactgccgaagaacattttagtattttacatgtgtt 24364828  T
Q  369 tt 370  Q
    ||    
T  24364829 tt 24364830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 263 - 344
Target Start/End: Original strand, 41804031 - 41804112
Alignment:
Q  263 tttcgacagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccgaagg 344  Q
    ||||||||||||||| |||||||||||||||| ||||||||| || |||| || || |||||| ||||||||||||||||||    
T  41804031 tttcgacagttaactaccgaggttttcctcggcagttaactgcagtcggtttttgaattcctcggcagttaactgccgaagg 41804112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 264 - 373
Target Start/End: Original strand, 6562866 - 6562975
Alignment:
Q  264 ttcgacagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccgaaggacattttagtactttacat 363  Q
    |||| |||||||||| |||||||||| |||| ||||||||| ||||||| ||| ||   ||| ||||||||||||||| ||| ||||   || |||||||    
T  6562866 ttcggcagttaactgtcgaggttttcttcggtagttaactgcagccggttttgaaccgtctcggcagttaactgccgagggatatttggataatttacat 6562965  T
Q  364 gtgtttttca 373  Q
    ||||||||||    
T  6562966 gtgtttttca 6562975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 327 - 406
Target Start/End: Original strand, 38879280 - 38879359
Alignment:
Q  327 gcagttaactgccgaaggacattttagtactttacatgtgtttttcagccaaacagcatgtgtcaacaacaatactctta 406  Q
    ||||| ||||||||||||| |||||| || ||||||||||||| |||| |||| |  ||||||||||| |||||||||||    
T  38879280 gcagtaaactgccgaaggatattttaatattttacatgtgtttatcagtcaaataagatgtgtcaacagcaatactctta 38879359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 263 - 341
Target Start/End: Complemental strand, 46141857 - 46141779
Alignment:
Q  263 tttcgacagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga 341  Q
    ||||| ||||||||| |||| ||||||||||| ||||||||| |||||||  | || |||||| |||||||||||||||    
T  46141857 tttcggcagttaactaccgatgttttcctcggcagttaactgcagccggttattgaattcctcggcagttaactgccga 46141779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 327 - 380
Target Start/End: Original strand, 48228364 - 48228417
Alignment:
Q  327 gcagttaactgccgaaggacattttagtactttacatgtgtttttcagccaaac 380  Q
    |||||||||||||||||||||||| |||| |||||  |||||||||||||||||    
T  48228364 gcagttaactgccgaaggacatttgagtaatttactcgtgtttttcagccaaac 48228417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 264 - 341
Target Start/End: Complemental strand, 52802204 - 52802127
Alignment:
Q  264 ttcgacagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga 341  Q
    |||| ||||||||| |||||||||||||||| ||||||||| ||||||  ||  | |||||| |||||||||||||||    
T  52802204 ttcggcagttaactaccgaggttttcctcggcagttaactgcagccggatttcaaattcctcggcagttaactgccga 52802127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 270 - 393
Target Start/End: Complemental strand, 1167630 - 1167506
Alignment:
Q  270 agttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga-aggacattttagtactttacatgtgtt 368  Q
    ||||||||||||||||||||||||  ||||||||| || |||| ||    |||||| |||||||||||| ||  ||  ||||| ||| ||||| ||||||    
T  1167630 agttaactgccgaggttttcctcgatagttaactgcagtcggttttacttttcctcggcagttaactgcagagggggtattttggtattttacttgtgtt 1167531  T
Q  369 tttcagccaaacagcatgtgtcaac 393  Q
    | ||||||||||  |||||||||||    
T  1167530 tctcagccaaaccacatgtgtcaac 1167506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 265 - 337
Target Start/End: Complemental strand, 11183259 - 11183187
Alignment:
Q  265 tcgacagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactg 337  Q
    ||||||||||||| |||||||||||||||| ||||||||| ||||||  ||  | |||||| |||||||||||    
T  11183259 tcgacagttaactaccgaggttttcctcggcagttaactgcagccggatttttaattcctcagcagttaactg 11183187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 261 - 389
Target Start/End: Complemental strand, 47585674 - 47585547
Alignment:
Q  261 aatttcgacagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccgaaggacattttagtacttta 360  Q
    |||||||  ||||||||||||||||||||||||| ||||||||| ||||| | ||    ||||||  |||| ||||||| | ||  ||||| ||| ||||    
T  47585674 aatttcggaagttaactgccgaggttttcctcggtagttaactgcagccgattttatttttcctcgacagtcaactgcctaggggtattttggtatttta 47585575  T
Q  361 catgtgtttttcagccaaacagcatgtgt 389  Q
    ||||||||| ||| ||||||| |||||||    
T  47585574 catgtgtttctca-ccaaacaacatgtgt 47585547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 265 - 394
Target Start/End: Complemental strand, 13147569 - 13147439
Alignment:
Q  265 tcgacagttaactgccgaggttttcctcggaagttaactgaagccgg-tcttggacttcctctgcagttaactgccgaaggacattttagtactttacat 363  Q
    |||||||||||||| ||||||||||||||| ||||||||| || ||| |||     |||||| |||||||||| ||||  || ||||  ||  ||||| |    
T  13147569 tcgacagttaactgtcgaggttttcctcggtagttaactgcagtcggttctattttttcctcagcagttaactaccgagtgatatttccgtcttttactt 13147470  T
Q  364 gtgtttttcagccaaacagcatgtgtcaaca 394  Q
    ||||||||||||||||||  |||| ||||||    
T  13147469 gtgtttttcagccaaacaagatgtatcaaca 13147439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 281 - 339
Target Start/End: Complemental strand, 46973261 - 46973203
Alignment:
Q  281 gaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgcc 339  Q
    |||||||||||||| ||||||||| ||||||| || || |||||| |||||||||||||    
T  46973261 gaggttttcctcggcagttaactgcagccggtttttgaattcctcggcagttaactgcc 46973203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 327 - 405
Target Start/End: Complemental strand, 50036858 - 50036780
Alignment:
Q  327 gcagttaactgccgaaggacattttagtactttacatgtgtttttcagccaaacagcatgtgtcaacaacaatactctt 405  Q
    ||||||||||||||| |||||||| |||| ||||| ||||||| |||||||||    ||||||||||| |||| |||||    
T  50036858 gcagttaactgccgagggacatttgagtaatttacttgtgtttctcagccaaatcaaatgtgtcaacagcaattctctt 50036780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 269 - 402
Target Start/End: Complemental strand, 26606867 - 26606734
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccgaaggacattttagtactttacatgtgtt 368  Q
    |||||||||||||| ||||||||||| ||||||||| || | || | | | |||||| |||||||| | |||| ||  ||||| ||| |||||  |||||    
T  26606867 cagttaactgccgaagttttcctcggtagttaactgtagtcagtttcgtatttcctcggcagttaattaccgaggggtattttggtattttactcgtgtt 26606768  T
Q  369 tttcagccaaacagcatgtgtcaacaacaatact 402  Q
    | |||||||| ||  ||||||||| | |||||||    
T  26606767 tctcagccaagcatgatgtgtcaatatcaatact 26606734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 6562165 - 6562237
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga 341  Q
    ||||||||| |||||| ||||||||| ||||||||| ||||||  ||  | |||||| |||||||||||||||    
T  6562165 cagttaactaccgaggatttcctcggcagttaactgcagccggatttcaaattcctcggcagttaactgccga 6562237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 13173904 - 13173833
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga 341  Q
    |||||||||||| |||||||||||||  |||||||| ||||||| || || |||| | |||||||||||||||    
T  13173904 cagttaactgccaaggttttcctcggctgttaactgcagccggtttttgaattcc-cagcagttaactgccga 13173833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 327 - 403
Target Start/End: Original strand, 13761106 - 13761182
Alignment:
Q  327 gcagttaactgccgaaggacattttagtactttacatgtgtttttcagccaaacagcatgtgtcaacaacaatactc 403  Q
    ||||||||||||||| || ||||| |||| |||||  |||||| ||| ||||||   ||||||||||||||||||||    
T  13761106 gcagttaactgccgaggggcatttgagtaatttactcgtgtttctcatccaaaccaaatgtgtcaacaacaatactc 13761182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 23276112 - 23276184
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga 341  Q
    |||||||||  ||||||||||||||| ||||||||| ||||||  ||  | |||||| |||||||||||||||    
T  23276112 cagttaactatcgaggttttcctcggcagttaactgtagccggatttttaattcctcagcagttaactgccga 23276184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 265 - 341
Target Start/End: Original strand, 49927513 - 49927589
Alignment:
Q  265 tcgacagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga 341  Q
    ||||||||||||| |||||||||| ||||| ||||||||  ||||||| ||  | ||| || |||||||||||||||    
T  49927513 tcgacagttaactaccgaggtttttctcggcagttaactatagccggtttttaaattcttcggcagttaactgccga 49927589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 263 - 310
Target Start/End: Complemental strand, 36072444 - 36072397
Alignment:
Q  263 tttcgacagttaactgccgaggttttcctcggaagttaactgaagccg 310  Q
    ||||| ||||||||| |||||||||||||||| ||||||||| |||||    
T  36072444 tttcggcagttaactaccgaggttttcctcggcagttaactgcagccg 36072397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 261 - 304
Target Start/End: Original strand, 47586233 - 47586276
Alignment:
Q  261 aatttcgacagttaactgccgaggttttcctcggaagttaactg 304  Q
    ||||||| |||||||||||||||||||| ||||| |||||||||    
T  47586233 aatttcggcagttaactgccgaggtttttctcggtagttaactg 47586276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 270 - 309
Target Start/End: Original strand, 50037275 - 50037314
Alignment:
Q  270 agttaactgccgaggttttcctcggaagttaactgaagcc 309  Q
    ||||||||||||||||||||||||| ||||||||| ||||    
T  50037275 agttaactgccgaggttttcctcggtagttaactgcagcc 50037314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 262 - 312
Target Start/End: Original strand, 5845485 - 5845535
Alignment:
Q  262 atttcgacagttaactgccgaggttttcctcggaagttaactgaagccggt 312  Q
    |||||| || |||| |||||||||||||||||| ||||||||| |||||||    
T  5845485 atttcggcaattaattgccgaggttttcctcggtagttaactgcagccggt 5845535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 263 - 341
Target Start/End: Original strand, 6437537 - 6437615
Alignment:
Q  263 tttcgacagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga 341  Q
    ||||| ||| ||||| ||||||||||||| || ||||||||| || || |  | ||||||||| |||||||||||||||    
T  6437537 tttcggcagataactaccgaggttttccttggtagttaactgcagtcgattattgacttcctcggcagttaactgccga 6437615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 269 - 311
Target Start/End: Original strand, 13636126 - 13636168
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccgg 311  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||    
T  13636126 cagttaactaccgaggttttcctcggcagttaactgcagccgg 13636168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 269 - 311
Target Start/End: Complemental strand, 19161961 - 19161919
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccgg 311  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||    
T  19161961 cagttaactcccgaggttttcctcggcagttaactgcagccgg 19161919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 263 - 341
Target Start/End: Original strand, 29438018 - 29438096
Alignment:
Q  263 tttcgacagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga 341  Q
    ||||| ||||||| | |||||||||||||||| ||||||||| ||||||| ||  | |   ||||||||||||||||||    
T  29438018 tttcggcagttaattaccgaggttttcctcggtagttaactgcagccggttttttaatatttctgcagttaactgccga 29438096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 269 - 338
Target Start/End: Original strand, 3941154 - 3941223
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgc 338  Q
    ||||||||| |||| ||||||||||| ||||||||| |||| || |  || |||||| ||||||||||||    
T  3941154 cagttaactaccgaagttttcctcggtagttaactgcagccagtttatgaattcctcggcagttaactgc 3941223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 269 - 310
Target Start/End: Original strand, 16270029 - 16270070
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccg 310  Q
    ||||||||||||||||||||| |||| ||||||||| |||||    
T  16270029 cagttaactgccgaggttttcttcggcagttaactgcagccg 16270070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 304
Target Start/End: Complemental strand, 26633602 - 26633561
Alignment:
Q  263 tttcgacagttaactgccgaggttttcctcggaagttaactg 304  Q
    ||||| ||||||||| |||||||||||||||| |||||||||    
T  26633602 tttcggcagttaactaccgaggttttcctcggcagttaactg 26633561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 269 - 310
Target Start/End: Complemental strand, 44336318 - 44336277
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccg 310  Q
    ||||||||| |||||||||||||||| ||||||||| |||||    
T  44336318 cagttaactaccgaggttttcctcggcagttaactgcagccg 44336277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 270 - 399
Target Start/End: Complemental strand, 31496302 - 31496173
Alignment:
Q  270 agttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccgaaggacattttagtactttacatgtgttt 369  Q
    ||||||||||||||||||||||||| || |||||| ||||||| ||    ||||||  ||||||||| |||||||  ||||| ||  |||||||||||||    
T  31496302 agttaactgccgaggttttcctcggtagataactgcagccggttttatttttcctcgacagttaactaccgaagggtatttttgtcttttacatgtgttt 31496203  T
Q  370 ttcagccaaacagcatgtgtcaacaacaat 399  Q
     ||||||||||| |||||||  ||||||||    
T  31496202 ctcagccaaacaacatgtgtatacaacaat 31496173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 270 - 399
Target Start/End: Complemental strand, 31501688 - 31501559
Alignment:
Q  270 agttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccgaaggacattttagtactttacatgtgttt 369  Q
    ||||||||||||||||||||||||| || |||||| ||||||| ||    ||||||  ||||||||| |||||||  ||||| ||  |||||||||||||    
T  31501688 agttaactgccgaggttttcctcggtagataactgcagccggttttaattttcctcgacagttaactaccgaagggtatttttgtcttttacatgtgttt 31501589  T
Q  370 ttcagccaaacagcatgtgtcaacaacaat 399  Q
     ||||||||||| |||||||  ||||||||    
T  31501588 ctcagccaaacaacatgtgtatacaacaat 31501559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 23958959 - 23958887
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga 341  Q
    ||||||||| |||||||||||||||| | ||||||| ||||||| ||||| || ||| |||||||||||||||    
T  23958959 cagttaactaccgaggttttcctcggcatttaactgcagccggttttggaatttctcggcagttaactgccga 23958887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 270 - 404
Target Start/End: Complemental strand, 17597009 - 17596874
Alignment:
Q  270 agttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga-aggacattttagtactttacatgtgtt 368  Q
    |||||||||||||| |||||||||| ||||||||| ||||||| ||    ||||||  ||||||||||| ||  ||  ||||| ||| |||||  |||||    
T  17597009 agttaactgccgagattttcctcggcagttaactgcagccggttttatttttcctcgacagttaactgcagagggggtattttggtattttactggtgtt 17596910  T
Q  369 tttcagccaaacagcatgtgtcaacaacaatactct 404  Q
    | |||||||||||  ||||||||||| |||||||||    
T  17596909 tctcagccaaacatgatgtgtcaacagcaatactct 17596874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 265 - 399
Target Start/End: Complemental strand, 31516195 - 31516061
Alignment:
Q  265 tcgacagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccgaaggacattttagtactttacatg 364  Q
    |||| |||||||||||||||||||||||| |||||||||| | ||||| ||    ||||||  ||||| ||| |||| ||  |||||  |  ||||||||    
T  31516195 tcgatagttaactgccgaggttttcctcgaaagttaactgtaaccggttttatttttcctcgacagttgactaccgaggggtatttttatcttttacatg 31516096  T
Q  365 tgtttttcagccaaacagcatgtgtcaacaacaat 399  Q
    ||||| ||||||||||| ||| |||  ||||||||    
T  31516095 tgtttctcagccaaacaacatatgtatacaacaat 31516061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 270 - 311
Target Start/End: Original strand, 14012380 - 14012421
Alignment:
Q  270 agttaactgccgaggttttcctcggaagttaactgaagccgg 311  Q
    ||||||||||||| ||||||||||| ||||||||||||||||    
T  14012380 agttaactgccgatgttttcctcggcagttaactgaagccgg 14012421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 320 - 405
Target Start/End: Complemental strand, 35096689 - 35096604
Alignment:
Q  320 ttcctctgcagttaactgccgaaggacattttagtactttacatgtgtttttcagccaaacagcatgtgtcaacaacaatactctt 405  Q
    |||||| |||||||||| ||||||| ||||| |||| |||||  |||||| ||| ||||||   |||||| |||||||||||||||    
T  35096689 ttcctcggcagttaactaccgaagggcatttgagtaatttactcgtgtttctcaaccaaaccaaatgtgtaaacaacaatactctt 35096604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 31768822 - 31768750
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga 341  Q
    ||||||||| |||||||||||||||| | ||||||| ||||||  ||  | |||||| |||||||||||||||    
T  31768822 cagttaactaccgaggttttcctcggcaattaactgcagccggatttttaattcctcggcagttaactgccga 31768750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 269 - 311
Target Start/End: Complemental strand, 6204896 - 6204854
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccgg 311  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||    
T  6204896 cagttaactaccgaggttttcctcggcagttaactgcagccgg 6204854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 269 - 311
Target Start/End: Complemental strand, 11691863 - 11691821
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccgg 311  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||    
T  11691863 cagttaactaccgaggttttcctcggcagttaactgcagccgg 11691821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 269 - 311
Target Start/End: Complemental strand, 22305177 - 22305135
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccgg 311  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||    
T  22305177 cagttaactaccgaggttttcctcggcagttaactgcagccgg 22305135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 364 - 397
Target Start/End: Complemental strand, 21510733 - 21510700
Alignment:
Q  364 gtgtttttcagccaaacagcatgtgtcaacaaca 397  Q
    ||||||||||||||||||| ||||||||||||||    
T  21510733 gtgtttttcagccaaacagtatgtgtcaacaaca 21510700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 269 - 338
Target Start/End: Original strand, 28362735 - 28362804
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgc 338  Q
    |||||||||  ||||||||||||||| ||||||||| ||||||  ||  | |||||| ||||||||||||    
T  28362735 cagttaactatcgaggttttcctcggcagttaactgcagccggatttcaaattcctcggcagttaactgc 28362804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 270 - 399
Target Start/End: Complemental strand, 31480430 - 31480301
Alignment:
Q  270 agttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccgaaggacattttagtactttacatgtgttt 369  Q
    |||||||| ||||||||||||| || || |||||| ||| ||| ||    ||||||  ||||||||| |||||||  ||||| |   |||||||||||||    
T  31480430 agttaactcccgaggttttcctgggtagataactgcagctggttttatttttcctcgacagttaactaccgaagggtatttttgacttttacatgtgttt 31480331  T
Q  370 ttcagccaaacagcatgtgtcaacaacaat 399  Q
     || |||||||| |||||||  ||||||||    
T  31480330 ctcggccaaacaacatgtgtatacaacaat 31480301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 269 - 399
Target Start/End: Complemental strand, 20208579 - 20208449
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccgaaggacattttagtactttacatgtgtt 368  Q
    ||||||||| |||||||||||||||| ||||||||| |||||||  | |    | || ||||||||||||||| |||||||| |||| |||||  |||||    
T  20208579 cagttaactaccgaggttttcctcggcagttaactgcagccggttctagtaaacttcggcagttaactgccgagggacatttgagtaatttactcgtgtt 20208480  T
Q  369 tttcagccaaacagcatgtgtcaacaacaat 399  Q
    | ||||||||||   ||||||||||||||||    
T  20208479 tctcagccaaaccaaatgtgtcaacaacaat 20208449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 320 - 391
Target Start/End: Complemental strand, 6790282 - 6790211
Alignment:
Q  320 ttcctctgcagttaactgccgaaggacattttagtactttacatgtgtttttcagccaaacagcatgtgtca 391  Q
    |||||| ||||||||||||||||||  ||||||||| |||||||||||||  |||||||||| |||||||||    
T  6790282 ttcctcggcagttaactgccgaagggtattttagtattttacatgtgtttcacagccaaacaccatgtgtca 6790211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 261 - 404
Target Start/End: Complemental strand, 33409600 - 33409461
Alignment:
Q  261 aatttcgacagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccgaaggacattttagtacttta 360  Q
    ||||||| |||||||||||||||||||||||||| ||||||||| ||||| | ||    ||||||    |  ||||||||| ||  ||||| ||| ||||    
T  33409600 aatttcggcagttaactgccgaggttttcctcgggagttaactgcagccgattttatttttcctc----gacaactgccgaggggtattttggtatttta 33409505  T
Q  361 catgtgtttttcagccaaacagcatgtgtcaacaacaatactct 404  Q
    ||||||||| ||||||||||| || |||| | ||||||||||||    
T  33409504 catgtgtttctcagccaaacaacacgtgtaatcaacaatactct 33409461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 269 - 399
Target Start/End: Complemental strand, 19069256 - 19069125
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga-aggacattttagtactttacatgtgt 367  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||  ||  | |||||| ||| |||||||||||  ||  ||||  ||| ||||| |||||    
T  19069256 cagttaactaccgaggttttcctcggcagttaactgcagccggatttcaaattcctcggcatttaactgccgagggggtatttgggtaatttacttgtgt 19069157  T
Q  368 ttttcagccaaacagcatgtgtcaacaacaat 399  Q
    || ||||||||||| ||||||  |||||||||    
T  19069156 ttctcagccaaacaacatgtgggaacaacaat 19069125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 21091593 - 21091658
Alignment:
Q  49 tcacttggttcgtatctagaaaaaataattaacttgctcaattaaatatagaatttaacttcaata 114  Q
    ||||||| |||||||| ||||||||||||| |||| |||| |||||||||| |||||||| |||||    
T  21091593 tcacttgcttcgtatccagaaaaaataattgacttactcacttaaatatagcatttaactacaata 21091658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 261 - 310
Target Start/End: Original strand, 33410225 - 33410274
Alignment:
Q  261 aatttcgacagttaactgccgaggttttcctcggaagttaactgaagccg 310  Q
    ||||||| |||||||||||||||||||||||||| ||||||||| |||||    
T  33410225 aatttcggcagttaactgccgaggttttcctcgggagttaactgcagccg 33410274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 263 - 339
Target Start/End: Complemental strand, 955867 - 955791
Alignment:
Q  263 tttcgacagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgcc 339  Q
    ||||| ||||||||| |||||||||| ||||| ||||||||| ||||| | || || |||||| |||||||||||||    
T  955867 tttcggcagttaactaccgaggtttttctcggcagttaactgcagccgatttttgaattcctcagcagttaactgcc 955791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 9890063 - 9889991
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga 341  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||  ||  | |||||| |||||||||||||||    
T  9890063 cagttaactaccgaggttttcctcggcagttaactgcagccggatttcaaattcctcggcagttaactgccga 9889991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 269 - 388
Target Start/End: Complemental strand, 15995791 - 15995671
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga-aggacattttagtactttacatgtgt 367  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||  ||  | |||||| ||| |||||||||||  ||  ||||  ||| ||||| |||||    
T  15995791 cagttaactaccgaggttttcctcggcagttaactgcagccggatttcaaattcctcggcatttaactgccgagggggtatttgggtaatttacttgtgt 15995692  T
Q  368 ttttcagccaaacagcatgtg 388  Q
    || ||||||||||| ||||||    
T  15995691 ttctcagccaaacaacatgtg 15995671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 320 - 399
Target Start/End: Original strand, 46439617 - 46439696
Alignment:
Q  320 ttcctctgcagttaactgccgaaggacattttagtactttacatgtgtttttcagccaaacagcatgtgtcaacaacaat 399  Q
    ||||||||||||||||| |||| ||| ||||| ||| |||||  |||||| |||||| ||||  ||||||||||||||||    
T  46439617 ttcctctgcagttaactaccgatggatattttggtattttactcgtgtttctcagcctaacaagatgtgtcaacaacaat 46439696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 263 - 341
Target Start/End: Complemental strand, 11494618 - 11494541
Alignment:
Q  263 tttcgacagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga 341  Q
    ||||| ||||||||| |||||||||||||||| ||||||||| ||||||| || || ||||||  ||||||| ||||||    
T  11494618 tttcggcagttaactaccgaggttttcctcggcagttaactgcagccggt-tttgaattcctcgacagttaattgccga 11494541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 272 - 337
Target Start/End: Original strand, 29700309 - 29700374
Alignment:
Q  272 ttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactg 337  Q
    |||||| |||||||||||||||| ||||||||| |||||||  | || |||||| |||||||||||    
T  29700309 ttaactaccgaggttttcctcggcagttaactgcagccggttattgaattcctcagcagttaactg 29700374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 269 - 310
Target Start/End: Original strand, 37022065 - 37022106
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccg 310  Q
    |||||||||||||||||||||||||| ||||||||| |||||    
T  37022065 cagttaactgccgaggttttcctcggtagttaactgcagccg 37022106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 285 - 381
Target Start/End: Complemental strand, 3403900 - 3403804
Alignment:
Q  285 ttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccgaaggacattttagtactttacatgtgtttttcagccaaaca 381  Q
    |||||||||| ||||||||| ||||||  ||  | |||||| ||||||||||||||||||  ||||  ||| ||||| ||| ||| |||||||||||    
T  3403900 ttttcctcggcagttaactgcagccggatttcaaattcctcggcagttaactgccgaagggtatttgcgtaatttacttgtatttctcagccaaaca 3403804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 264 - 312
Target Start/End: Complemental strand, 26791723 - 26791675
Alignment:
Q  264 ttcgacagttaactgccgaggttttcctcggaagttaactgaagccggt 312  Q
    |||| |||||||||||||||||||| ||||| ||||||||| |||||||    
T  26791723 ttcggcagttaactgccgaggtttttctcggtagttaactgcagccggt 26791675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 33383883 - 33383839
Alignment:
Q  260 aaatttcgacagttaactgccgaggttttcctcggaagttaactg 304  Q
    |||||||| ||||||||| |||||||||||||||| |||||||||    
T  33383883 aaatttcggcagttaacttccgaggttttcctcggcagttaactg 33383839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 328 - 403
Target Start/End: Original strand, 48807449 - 48807522
Alignment:
Q  328 cagttaactgccgaaggacattttagtactttacatgtgtttttcagccaaacagcatgtgtcaacaacaatactc 403  Q
    |||||||||||||| |||||||| |||| |||||  |||||| ||||||||||  ||  |||||||||||||||||    
T  48807449 cagttaactgccgagggacatttgagtaatttactcgtgtttctcagccaaac--caaatgtcaacaacaatactc 48807522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 269 - 304
Target Start/End: Original strand, 11084011 - 11084046
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactg 304  Q
    |||||||||||||||||||||||||| |||||||||    
T  11084011 cagttaactgccgaggttttcctcgggagttaactg 11084046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 399
Target Start/End: Original strand, 40335155 - 40335270
Alignment:
Q  284 gttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccgaaggacattttagtactttacatgtgtttttcagccaaacagc 383  Q
    ||||||||||| ||||||||  ||||||| ||    |||||| ||||||||||   |||||  ||||| ||  ||||||||||||| ||||||||||| |    
T  40335155 gttttcctcggcagttaactacagccggttttatttttcctcagcagttaactattgaagggtattttcgtcttttacatgtgtttctcagccaaacaac 40335254  T
Q  384 atgtgtcaacaacaat 399  Q
    ||||||  ||||||||    
T  40335255 atgtgtatacaacaat 40335270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 263 - 310
Target Start/End: Original strand, 49572898 - 49572945
Alignment:
Q  263 tttcgacagttaactgccgaggttttcctcggaagttaactgaagccg 310  Q
    ||||||||||| ||| |||||||||||||||| ||||||||| |||||    
T  49572898 tttcgacagtttactaccgaggttttcctcggcagttaactgcagccg 49572945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 269 - 311
Target Start/End: Original strand, 6178114 - 6178156
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccgg 311  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||    
T  6178114 cagttaactaccgaggttttcctcggcagttaactgcagccgg 6178156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 269 - 311
Target Start/End: Complemental strand, 8109460 - 8109418
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccgg 311  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||    
T  8109460 cagttaactcccgaggttttcctcggcagttaactgtagccgg 8109418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 269 - 311
Target Start/End: Original strand, 21018008 - 21018050
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccgg 311  Q
    |||||||||||||||||||||||||| |||||| || ||||||    
T  21018008 cagttaactgccgaggttttcctcggcagttaattgcagccgg 21018050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 269 - 311
Target Start/End: Complemental strand, 49094153 - 49094111
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccgg 311  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||    
T  49094153 cagttaactaccgaggttttcctcggcagttaactgcagccgg 49094111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 269 - 311
Target Start/End: Complemental strand, 55793989 - 55793947
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccgg 311  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||    
T  55793989 cagttaactcccgaggttttcctcggcagttaactgcagccgg 55793947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 6790984 - 6791037
Alignment:
Q  329 agttaactgccgaaggacattttagtactttacatgtgtttttcagccaaacag 382  Q
    ||||||||| ||| ||  ||||||||| ||||||||||||| ||||||||||||    
T  6790984 agttaactgtcgaggggtattttagtattttacatgtgtttctcagccaaacag 6791037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 269 - 310
Target Start/End: Original strand, 21022892 - 21022933
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccg 310  Q
    ||||||||| |||||||||||||||| ||||||||| |||||    
T  21022892 cagttaactaccgaggttttcctcggcagttaactgcagccg 21022933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 286 - 399
Target Start/End: Complemental strand, 44010616 - 44010503
Alignment:
Q  286 tttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccgaaggacattttagtactttacatgtgtttttcagccaaacagcat 385  Q
    ||||||||| ||||||||| || |||| ||  |||||| |  ||||||||| ||||   | ||||| ||| ||||||||| ||| ||||||||||| |||    
T  44010616 tttcctcggtagttaactgcagtcggttttaaacttccacgacagttaactaccgagaaatattttcgtattttacatgtatttctcagccaaacaacat 44010517  T
Q  386 gtgtcaacaacaat 399  Q
    ||||  ||||||||    
T  44010516 gtgtatacaacaat 44010503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 265 - 341
Target Start/End: Original strand, 9494806 - 9494882
Alignment:
Q  265 tcgacagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga 341  Q
    ||||||||||||| |||||||||||||||| ||||||||| ||||||| ||  | |||||| |||||||||||||||    
T  9494806 tcgacagttaactcccgaggttttcctcggcagttaactgcagccggttttttaattcctcggcagttaactgccga 9494882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 248 - 310
Target Start/End: Original strand, 48590322 - 48590384
Alignment:
Q  248 atgggtgaaactaaatttcgacagttaactgccgaggttttcctcggaagttaactgaagccg 310  Q
    |||||||||| | ||||||| ||||||||||||||| |||||||||| ||||||||| |||||    
T  48590322 atgggtgaaattgaatttcggcagttaactgccgagattttcctcggtagttaactgcagccg 48590384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 279 - 406
Target Start/End: Complemental strand, 40140798 - 40140670
Alignment:
Q  279 ccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccgaaggac-attttagtactttacatgtgtttttcagcca 377  Q
    |||||||||||||||| ||||||||| ||||| | ||    |||||| |||||||||||| || | |  |||||| || |||||  |||||| |||||||    
T  40140798 ccgaggttttcctcggcagttaactggagccgattttatttttcctcggcagttaactgcagaggaagtattttaatattttactggtgtttctcagcca 40140699  T
Q  378 aacagcatgtgtcaacaacaatactctta 406  Q
    ||||  |||||||||||||||| ||||||    
T  40140698 aacatgatgtgtcaacaacaattctctta 40140670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 320 - 399
Target Start/End: Original strand, 34139724 - 34139803
Alignment:
Q  320 ttcctctgcagttaactgccgaaggacattttagtactttacatgtgtttttcagccaaacagcatgtgtcaacaacaat 399  Q
    |||||| ||||||||||||||| || ||||| |||| |||||  |||||| ||||||||||   ||||||||||||||||    
T  34139724 ttcctcggcagttaactgccgaggggcatttgagtaatttactcgtgtttctcagccaaactcaatgtgtcaacaacaat 34139803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 327 - 376
Target Start/End: Original strand, 38266163 - 38266212
Alignment:
Q  327 gcagttaactgccgaaggacattttagtactttacatgtgtttttcagcc 376  Q
    ||||||||||||||| |||||||| |||| ||||||||| ||||||||||    
T  38266163 gcagttaactgccgagggacatttgagtaatttacatgtatttttcagcc 38266212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 30355243 - 30355315
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga 341  Q
    ||||||||| |||||||||||||||| ||||||||| ||||| | || || ||| || ||| |||||||||||    
T  30355243 cagttaactaccgaggttttcctcggcagttaactgcagccgatttttgaattcttcagcaattaactgccga 30355315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 48314742 - 48314670
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga 341  Q
    ||||||| | ||||||||||| |||| ||||||||| |||||||  | || |||||| |||||||||||||||    
T  48314742 cagttaagtaccgaggttttcgtcggtagttaactgcagccggttattgaattcctcggcagttaactgccga 48314670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 248 - 279
Target Start/End: Complemental strand, 7975003 - 7974972
Alignment:
Q  248 atgggtgaaactaaatttcgacagttaactgc 279  Q
    ||||||||||||||||||||||||||||||||    
T  7975003 atgggtgaaactaaatttcgacagttaactgc 7974972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 269 - 312
Target Start/End: Original strand, 10098121 - 10098164
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggt 312  Q
    ||||||||| |||||||||||||||| ||||||||| |||||||    
T  10098121 cagttaactcccgaggttttcctcggcagttaactgcagccggt 10098164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 265 - 304
Target Start/End: Original strand, 15074228 - 15074267
Alignment:
Q  265 tcgacagttaactgccgaggttttcctcggaagttaactg 304  Q
    ||||||||||||| |||||||||||||||| |||||||||    
T  15074228 tcgacagttaactaccgaggttttcctcggcagttaactg 15074267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 270 - 301
Target Start/End: Complemental strand, 27919101 - 27919070
Alignment:
Q  270 agttaactgccgaggttttcctcggaagttaa 301  Q
    ||||||||||||||||||||||||||||||||    
T  27919101 agttaactgccgaggttttcctcggaagttaa 27919070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 269 - 312
Target Start/End: Complemental strand, 29112442 - 29112399
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggt 312  Q
    |||||||||||||| ||||||||||| ||||||||| |||||||    
T  29112442 cagttaactgccgaagttttcctcggcagttaactgcagccggt 29112399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 265 - 304
Target Start/End: Original strand, 34742395 - 34742434
Alignment:
Q  265 tcgacagttaactgccgaggttttcctcggaagttaactg 304  Q
    ||||||||||||| |||||||||||||||| |||||||||    
T  34742395 tcgacagttaacttccgaggttttcctcggcagttaactg 34742434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 269 - 304
Target Start/End: Original strand, 36781453 - 36781488
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactg 304  Q
    |||||||||||||||||||||||||| |||||||||    
T  36781453 cagttaactgccgaggttttcctcgggagttaactg 36781488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 269 - 312
Target Start/End: Complemental strand, 38265514 - 38265471
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggt 312  Q
    |||||||||||||||||||||||| | ||||||||| |||||||    
T  38265514 cagttaactgccgaggttttcctcagtagttaactgcagccggt 38265471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 8522140 - 8522174
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaact 303  Q
    |||||||||||||||||||||||||| ||||||||    
T  8522140 cagttaactgccgaggttttcctcgggagttaact 8522174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 269 - 311
Target Start/End: Original strand, 9367728 - 9367770
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccgg 311  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||    
T  9367728 cagttaactaccgaggttttcctcggcagttaactgcagccgg 9367770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 271 - 381
Target Start/End: Original strand, 22640673 - 22640783
Alignment:
Q  271 gttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccgaaggacattttagtactttacatgtgtttt 370  Q
    ||||| |||||||||||| ||||| ||||||||| ||  ||| ||| ||||||||  ||||||||| | ||  |  ||||| ||| |||| ||||||||     
T  22640673 gttaagtgccgaggtttttctcggtagttaactgcagttggttttgaacttcctcgacagttaactacagagaggtattttcgtattttatatgtgttta 22640772  T
Q  371 tcagccaaaca 381  Q
    |||||||||||    
T  22640773 tcagccaaaca 22640783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 265 - 303
Target Start/End: Original strand, 31324806 - 31324844
Alignment:
Q  265 tcgacagttaactgccgaggttttcctcggaagttaact 303  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  31324806 tcgatagttaactgccgaggttttcctcggtagttaact 31324844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 271 - 341
Target Start/End: Original strand, 34623386 - 34623456
Alignment:
Q  271 gttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga 341  Q
    ||||||| |||||| ||||||||| ||||||||| ||||| |||   | |||||| |||||||||||||||    
T  34623386 gttaactaccgaggatttcctcggcagttaactgcagccgatctcttaattcctcggcagttaactgccga 34623456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 331 - 376
Target Start/End: Original strand, 18220022 - 18220067
Alignment:
Q  331 ttaactgccgaaggacattttagtactttacatgtgtttttcagcc 376  Q
    |||||||||||  ||||||| |||| ||||||||||||||||||||    
T  18220022 ttaactgccgagagacatttaagtaatttacatgtgtttttcagcc 18220067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 270 - 303
Target Start/End: Complemental strand, 31323117 - 31323084
Alignment:
Q  270 agttaactgccgaggttttcctcggaagttaact 303  Q
    ||||||||||||||||||| ||||||||||||||    
T  31323117 agttaactgccgaggtttttctcggaagttaact 31323084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 38555411 - 38555452
Alignment:
Q  263 tttcgacagttaactgccgaggttttcctcggaagttaactg 304  Q
    ||||| |||||||||||||| ||||||||||| |||||||||    
T  38555411 tttcggcagttaactgccgaagttttcctcggcagttaactg 38555452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 264 - 373
Target Start/End: Original strand, 18056 - 18165
Alignment:
Q  264 ttcgacagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccgaaggacattttagtactttacat 363  Q
    |||| |||||||||| |||||||||| |||| ||||||||| ||||||| ||| ||   ||| ||||||||||||||| ||| ||||   || |||||||    
T  18056 ttcggcagttaactgtcgaggttttcttcggtagttaactgcagccggttttgaaccgtctcggcagttaactgccgagggatatttggataatttacat 18155  T
Q  364 gtgtttttca 373  Q
    ||||||||||    
T  18156 gtgtttttca 18165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 17355 - 17427
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga 341  Q
    ||||||||| |||||| ||||||||| ||||||||| ||||||  ||  | |||||| |||||||||||||||    
T  17355 cagttaactaccgaggatttcctcggcagttaactgcagccggatttcaaattcctcggcagttaactgccga 17427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 333 - 410
Target Start/End: Complemental strand, 46740 - 46663
Alignment:
Q  333 aactgccgaaggacattttagtactttacatgtgtttttcagccaaacagcatgtgtcaacaacaatactcttaattt 410  Q
    |||||||||||   ||||||||| ||||| ||||||||||||||| ||  |||||||||||||||||  |||||||||    
T  46740 aactgccgaagagtattttagtattttacttgtgtttttcagccatacctcatgtgtcaacaacaattttcttaattt 46663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 320 - 399
Target Start/End: Original strand, 649 - 728
Alignment:
Q  320 ttcctctgcagttaactgccgaaggacattttagtactttacatgtgtttttcagccaaacagcatgtgtcaacaacaat 399  Q
    |||||| ||||||||||||||| || ||||| |||| |||||  |||||| ||||||||||   ||||||||||||||||    
T  649 ttcctcggcagttaactgccgaggggcatttgagtaatttactcgtgtttctcagccaaactcaatgtgtcaacaacaat 728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 272 - 341
Target Start/End: Complemental strand, 3951 - 3882
Alignment:
Q  272 ttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga 341  Q
    |||||| |||||||||||||||| ||||||||| ||||| | || || ||||||  ||||||||||||||    
T  3951 ttaactaccgaggttttcctcggcagttaactgcagccgatttttgaattcctcgacagttaactgccga 3882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0794 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0794
Description:

Target: scaffold0794; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 269 - 312
Target Start/End: Complemental strand, 5340 - 5297
Alignment:
Q  269 cagttaactgccgaggttttcctcggaagttaactgaagccggt 312  Q
    ||||||||| |||||||||||||||| ||||||||| |||||||    
T  5340 cagttaactaccgaggttttcctcggtagttaactgcagccggt 5297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 270 - 341
Target Start/End: Original strand, 15960 - 16031
Alignment:
Q  270 agttaactgccgaggttttcctcggaagttaactgaagccggtcttggacttcctctgcagttaactgccga 341  Q
    |||||||| |||||||||||||||| ||||||||| ||| ||  ||  | |||||| |||||||||||||||    
T  15960 agttaactaccgaggttttcctcggcagttaactgcagctggatttcaaattcctcggcagttaactgccga 16031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 327 - 403
Target Start/End: Complemental strand, 65329 - 65252
Alignment:
Q  327 gcagttaactgccgaaggacatttt-agtactttacatgtgtttttcagccaaacagcatgtgtcaacaacaatactc 403  Q
    |||||||||||||||| |||||||| |||| |||||   ||||| ||||||||||   |||||| |||||||||||||    
T  65329 gcagttaactgccgaatgacattttgagtaatttactcatgtttctcagccaaacgaaatgtgtaaacaacaatactc 65252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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