View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3388-Insertion-9 (Length: 192)
Name: NF3388-Insertion-9
Description: NF3388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3388-Insertion-9 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 4e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 4e-86
Query Start/End: Original strand, 8 - 192
Target Start/End: Complemental strand, 47719079 - 47718895
Alignment:
| Q |
8 |
gaaatcgctaaaaccctaaacccttctgtgcatcgctttgtcatagccatgtatctctacaatctcactctgcaacgacccaccggcattgtctgtgcaa |
107 |
Q |
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| T |
47719079 |
gaaatctctaaaaccctaaacccttctgtgcatcgctttgtcatagccatgtatctctacaatctcactctgcaacgacccaccggcattgtctgtgcaa |
47718980 |
T |
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| Q |
108 |
tcaacggaaacttctccggctccgatgacggtaaaacccaagaaatcgtcgtcgccagaggcaaggttctcgaacttcttcgccc |
192 |
Q |
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| T |
47718979 |
tcaacggcaacttctccggctcagacgacggtattacccaagaaatcgtcgtcgccagaggcaaggttctcgaacttcttcgccc |
47718895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 4e-86
Query Start/End: Original strand, 8 - 192
Target Start/End: Original strand, 47855004 - 47855188
Alignment:
| Q |
8 |
gaaatcgctaaaaccctaaacccttctgtgcatcgctttgtcatagccatgtatctctacaatctcactctgcaacgacccaccggcattgtctgtgcaa |
107 |
Q |
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| T |
47855004 |
gaaatctctaaaaccctaaacccttctgtgcatcgctttgtcatagccatgtatctctacaatctcactctgcaacgacccaccggcattgtctgtgcaa |
47855103 |
T |
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| Q |
108 |
tcaacggaaacttctccggctccgatgacggtaaaacccaagaaatcgtcgtcgccagaggcaaggttctcgaacttcttcgccc |
192 |
Q |
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| T |
47855104 |
tcaacggcaacttctccggctcagacgacggtattacccaagaaatcgtcgtcgccagaggcaaggttctcgaacttcttcgccc |
47855188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 54 - 127
Target Start/End: Original strand, 52208309 - 52208382
Alignment:
| Q |
54 |
ccatgtatctctacaatctcactctgcaacgacccaccggcattgtctgtgcaatcaacggaaacttctccggc |
127 |
Q |
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| T |
52208309 |
ccatgtatctttacaatctcactcttcaacgacccaccggaatcatctgtgccatcaacggcaacttctccggc |
52208382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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