View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3388R-Insertion-1 (Length: 1070)

Name: NF3388R-Insertion-1
Description: NF3388R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3388R-Insertion-1
NF3388R-Insertion-1
[»] chr3 (1 HSPs)
chr3 (8-1036)||(51770132-51771146)


Alignment Details
Target: chr3 (Bit Score: 617; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 617; E-Value: 0
Query Start/End: Original strand, 8 - 1036
Target Start/End: Complemental strand, 51771146 - 51770132
Alignment:
Q  8 agtagtaacatcaagaaagggagagtg----agtgagagaagcaattagcagcaataacatcattatcgactgaaagacaagaagaaggcttggcttgac 103  Q
    |||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51771146 agtagtaacatcaagaaagggagagtgtgtgagtgagagaagcaattagcagcaataacatcattatcgactgaaagacaagaagaaggcttggcttgac 51771047  T
Q  104 tatcatcattttcattctgttttacagccaccagcaatggatgtgtttgtggtggacacggtggcggtggttgtttcatcttcttccacnnnnnnnnnnn 203  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               
T  51771046 tatcatcattttcattctgttttacagctaccagcaatggatgtgtttgtggtggacacggtggcggtggttgtttcatcttcttccacagtagtagtag 51770947  T
Q  204 nnnnnnnnctagcagcaacatgcaatgacccttatacccttgctcacaaacaggtggtggttctctttgcaaatccaacaacaacctcgttgctcatcag 303  Q
             ||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51770946 tagtagtagtactagcagcatgcaatgacccttatacccttgctcacaaacaggtggtggttctctttgcaaatccaacaacaacctcgttgctcatcag 51770847  T
Q  304 acattgacatcgtaccattgcatttgcgtccattaaggcagacaggttgaagccaggcnnnnnnnnnnnnnnnnnnnncaaatattacttactacctttt 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    ||||||||    ||||||||||    
T  51770846 acattgacatcgtaccattgcatttgcgtccattaaggcagacaggttgaagccaggc-----atattatattatatacaaatatt----actacctttt 51770756  T
Q  404 ctttcattcattcatttcaccaacaacac----ttctttctttcttgatggtataatgaaatttg-nnnnnnnncttgtatcgaggattttcttggattt 498  Q
    |||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||    
T  51770755 ctttcattcattcatttcaccaacaacacttctttctttctttcttgatggtataatgaaatttgaaaaaaaaacttgtatcgaggattttcttggattt 51770656  T
Q  499 attattgacttcaagtattgaatccaatataaggaaggggatttattattaattgttgttgattgtatatgattttagaacaagtggattagtaattatt 598  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||  ||    
T  51770655 attattgacttgaagtattgaatccaatataaggaaggggatttattattaattgttgt----------tgattttagaacaagtggattagtaat--tt 51770568  T
Q  599 attttaaattttgtgttgaaataatgtacgggtagggaggggaaaagggggaaaaaacatggatcaaatgtggtccaagaatgtcagggagaaggattgt 698  Q
    |||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51770567 attttaaattttgtgttgaaataatgtacgggt----aggggaaaagggggaaaaaacatggatcaaatgtggtccaagaatgtcagggagaaggattgt 51770472  T
Q  699 tgtgttgtgtggaattgaaatttttggtcactgtttttt-ccctttatgctagcagttgttgcaacataatttgacacactagtgtagtggggcttattt 797  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  51770471 tgtgttgtgtggaattgaaatttttggtcactgttttttcccctttatgctagcagttgttgcaacatgatttgacacactagtgtagtggggcttattt 51770372  T
Q  798 tctgtgacc---nnnnnnnnnnnnnnnnnnntgtctcattaggattaccataataaacatacatacattgttcttttatttagtttatcaacataaatat 894  Q
    |||||||||                      |||||||||||||||||||||||||    ||||||||||||| ||||||||||||||||||||||||||    
T  51770371 tctgtgaccttattatattattattattatttgtctcattaggattaccataataa----acatacattgttc-tttatttagtttatcaacataaatat 51770277  T
Q  895 taagaataaaatattgcatgatctctctctcagaaaaggaaggttcac-ggtatccattctttaggtcaaagaaagtaaagag-aaccgttgtttaggat 992  Q
    || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  51770276 taggaataaaatattgcatgatctctctctcagaaaaggaaggttcacgggtatccattctttaggtcaaagaaagtaaagagaaaccgttgtttaggat 51770177  T
Q  993 ttactactac-tactacagtattaccttcacattcttctgctcta 1036  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  51770176 ttactactacttactacagtattaccttcacattcttctgctcta 51770132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University