View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3388R-Insertion-11 (Length: 465)
Name: NF3388R-Insertion-11
Description: NF3388R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3388R-Insertion-11 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 9 - 465
Target Start/End: Original strand, 3592458 - 3592911
Alignment:
| Q |
9 |
gatattgattctttggtctcaactgatctaaatgttccttgggatgattctgatatcaaaccttnnnnnnnn-cgaaccggacagttcaaccgactttta |
107 |
Q |
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| T |
3592458 |
gatattgattctttggtctcaactgatctaaatgttccttgggatgattctgatatcaaaccttaaaaaaaaacgaaccggacagttcaaccgactttta |
3592557 |
T |
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| Q |
108 |
ttgtggtttggttattttggcagttcgatcacgggcggttcaagacggttgaatcatgatctagaagtctcacctgttcgatgtccagttcaggttttaa |
207 |
Q |
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| T |
3592558 |
ttgtggtttggttattttggcagttcgatcacgggcggttcaacacggttgaatcatgatctagaagtctcacctgttcgatgtccagttcaggttttaa |
3592657 |
T |
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| Q |
208 |
accattgctttgatataaaaatatnnnnnnnntgatttgttaacacatggtagtttagtgtctaatgtccataggttagttatttacttggggtgttgtg |
307 |
Q |
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| T |
3592658 |
accattgctttgatataaaaaaa----aaaaatgatttgttaacacatggtagtttagtttctaatgtccataggttagttatttacttggggtgttgtg |
3592753 |
T |
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| Q |
308 |
tttttgatacagattagtaagtgttcttgttctcatatggaacatattatgcagtggtgtatgagtatttggagctgacttattttagtttcagcttcag |
407 |
Q |
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| T |
3592754 |
tttttgatacagattagtaagtgttcttgttctcatatggaacatattatgcagtggtgtatgagtatttggagctgacttattttagtttcagcttcag |
3592853 |
T |
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| Q |
408 |
attcaagcaagagggtctaattaatattaatgtaatccactgtgtttacctacctatt |
465 |
Q |
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| T |
3592854 |
attcaagcaagagggtctaattaatattaatgtaatccactgtgtttacctacttatt |
3592911 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 35722383 - 35722446
Alignment:
| Q |
12 |
attgattctttggtctcaactgatctaaatgttcc---ttgggatgattctgatatcaaacctt |
72 |
Q |
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|||||||| ||||| |||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
35722383 |
attgattcattggtttcaactgatctaaagaatccttattgggatgattctgatatcaaacctt |
35722446 |
T |
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