View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3388R-Insertion-12 (Length: 459)

Name: NF3388R-Insertion-12
Description: NF3388R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3388R-Insertion-12
NF3388R-Insertion-12
[»] chr5 (1 HSPs)
chr5 (8-459)||(31339820-31340271)


Alignment Details
Target: chr5 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 8 - 459
Target Start/End: Original strand, 31339820 - 31340271
Alignment:
Q  8 actatattggtgactttgagttgtgtgggtttggaaagttatacaagtaatgttatattttaacgaaattatatttaattgaatgcatgtgtgttttcta 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31339820 actatattggtgactttgagttgtgtgggtttggaaagttatacaagtaatgttatattttaacgaaattatatttaattgaatgcatgtgtgttttcta 31339919  T
Q  108 cgcatgatagggtgccttgtttaggatgtatttatcacaacgatgttcatattgatgattatctgctttcatatgatttagaataaataaattttcctat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31339920 cgcatgatagggtgccttgtttaggatgtatttatcacaacgatgttcatattgatgattatctgctttcatatgatttagaataaataaattttcctat 31340019  T
Q  208 tgaaatgtaataagtgacgtttgcatatgaatatatgtgatataagcatgttattattgttacatatgttggattatgtgtaaattgttgtatgttcata 307  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31340020 tgaaatgtaataagtgatgtttgcatatgaatatatgtgatataagcatgttattattgttacatatgttggattatgtgtaaattgttgtatgttcata 31340119  T
Q  308 tgttaagttgacaatgcatgttcatgcatatcatatatagttacatttttcttttgaagaaacatatcatagttacatggtgactatgatgggtgatgtg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31340120 tgttaagttgacaatgcatgttcatgcatatcatatatagttacatttttcttttgaagaaacatatcatagttacatggtgactatgatgggtgatgtg 31340219  T
Q  408 gtgaggtttccggtgatagggacccatctaaattctacaaaattttattgag 459  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31340220 gtgaggtttccggtgatagggacccatctaaattctacaaaattttattgag 31340271  T

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