View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3388R-Insertion-14 (Length: 426)
Name: NF3388R-Insertion-14
Description: NF3388R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3388R-Insertion-14 |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 8 - 357
Target Start/End: Complemental strand, 1083870 - 1083521
Alignment:
| Q |
8 |
attaaacacacaaaaaagaagattttattaagataacaagcagcatacctatagttatggacatctataattctaggatggtcaaggttcatcctcgctc |
107 |
Q |
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| T |
1083870 |
attaaacacacaaaaaagaagattttattaagataacaagcagcatacctatagttatggacatctataattctaggatggtcaaggttcatcctcgctc |
1083771 |
T |
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| Q |
108 |
gcctaacctgactcgagttcctgctaaatttctctgtaaaattacaattgagggttataagattttgtactaattaatgtcatcattttcaaatgaaaat |
207 |
Q |
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| T |
1083770 |
gcctaacctgactcgagttcctgctaaatttctctgtaaaattataattgagggttataagattttgtactaattaatgtcatcattttcaaatgaaaat |
1083671 |
T |
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| Q |
208 |
aaggcaattcaattggtaaagtgtgtatgtacctgttttgctctttttgattgtgcttggctctctctcagacaaactactcctgcttctgtattccaag |
307 |
Q |
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| T |
1083670 |
aaggcaattcaattggtaaagtgtgtatgtacctgttttgctctttttgattgtgcttggctctctctcagacaaactactcctgcttctgtattccaag |
1083571 |
T |
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| Q |
308 |
ccacctcctgataaaggaaacatgtttcaattcatcagattaaaattcac |
357 |
Q |
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| T |
1083570 |
ccacctcctgataaaggaaacatgtttcaattcatcagattaaaattcac |
1083521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 388 - 426
Target Start/End: Complemental strand, 1083500 - 1083462
Alignment:
| Q |
388 |
ttatacacaacacaacccttttgcatttgcatcttggtt |
426 |
Q |
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| T |
1083500 |
ttatacacaacacaacccttttgcatttgcatcttggtt |
1083462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 52 - 144
Target Start/End: Complemental strand, 46763453 - 46763361
Alignment:
| Q |
52 |
atacctatagttatggacatctataattctaggatggtcaaggttcatcctcgctcgcctaacctgactcgagttcctgctaaatttctctgt |
144 |
Q |
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| T |
46763453 |
atacctatagttctgcacatcgataattcgaggatggtcaagattcattcttcctcgcctaacctgactcgtgctcctgctaaacttctctgt |
46763361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 46763254 - 46763196
Alignment:
| Q |
238 |
acctgttttgctctttttgattgtgcttggctctctctcagacaaactactcctgcttc |
296 |
Q |
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| T |
46763254 |
acctgttttgctctttttgattgtgcatggttctctctcagagaagctattcctacttc |
46763196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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