View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3388R-Insertion-15 (Length: 426)
Name: NF3388R-Insertion-15
Description: NF3388R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3388R-Insertion-15 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 9 - 426
Target Start/End: Complemental strand, 47092692 - 47092275
Alignment:
| Q |
9 |
cttctttgtggataatcatcatcgtccaacaaagaactaaccggttgtccactaatcaaccggtaacccacctgattacctaactttgtcatttcattag |
108 |
Q |
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| T |
47092692 |
cttctttgtggataatcatcatcgtccaacaaagaactgaccggttgtccactaatcaaccggtaacccacttgattacctaactttgtcattttattag |
47092593 |
T |
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| Q |
109 |
ggttaactattaacagctcatttggctctaagccgagcgtaattctagcctcagcttcccttttgacagcttctttattaaccgtccagtaactttttct |
208 |
Q |
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| T |
47092592 |
ggttaactattaacagctcatttggctctaagccgagcgtaattctagcctcagcttcccttttgacagcttctttattaaccgtccagtaactttttct |
47092493 |
T |
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| Q |
209 |
tggtgttccaaacccacttgctttgaccttttgcaactttgcattgatgaaagagtttgcattatcatcaatgtcaaggtcaagataatatgttacaagg |
308 |
Q |
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| T |
47092492 |
tggtgttccaaatccacttgctttgaccttttgcaactttgcattgatgaaagagtttgcattatcatcaatgtcaaggtcaagataatatgttacaagg |
47092393 |
T |
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| Q |
309 |
tgatcatgataattggctatggtgttttctgccactaaggttccaaatactctttcttttatttgatttttatgtgtgtatgggactgctttcatttcta |
408 |
Q |
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| T |
47092392 |
tgatcatgataattggctatggtgttttctgccactaaggttccaaatactctttcttttatttgatttttatgtgtgtatgggactgctttcatttcta |
47092293 |
T |
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| Q |
409 |
atacacctgttagagcca |
426 |
Q |
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| T |
47092292 |
atacacctgttagagcca |
47092275 |
T |
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