View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3388R-Insertion-16 (Length: 279)
Name: NF3388R-Insertion-16
Description: NF3388R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3388R-Insertion-16 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 9 - 279
Target Start/End: Complemental strand, 143075 - 142805
Alignment:
| Q |
9 |
tgtagctgttcttagtacatattccgatctaaaaggtgcgaaactttttgatggattcacaccctttacttgaatttctcttggaagataagtatatcta |
108 |
Q |
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| T |
143075 |
tgtagctgttcttagtacatattccgatctaaaaggtgcgaaactttttgatggattcacaccctttacttgaatttctcttggaagataagtatatcta |
142976 |
T |
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| Q |
109 |
atcaaatcagtgaaatggttgcaagatttgcaattttgagtcaactccaatttttgacttattaacttttgaggataataatcttcaaagtatttaaaag |
208 |
Q |
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| T |
142975 |
atcaaatcagtgaaatggttgcaagatttgcaattttgagtcaactccaatttttgacttattaacttttgaggataataatcttcaaagtatttaaaag |
142876 |
T |
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| Q |
209 |
caagatcaataaaactaacacaattttccttattgctattgcaaccattattttcaactaataacacccct |
279 |
Q |
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| T |
142875 |
caagatcaataaaactaacacaattttccttattgctattgcaaccattattttcaactaataacacccct |
142805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 9 - 277
Target Start/End: Original strand, 45960604 - 45960869
Alignment:
| Q |
9 |
tgtagctgttcttagtacatattccgatctaaaaggtgcgaaactttttgatggattcacaccctttacttgaatttctcttggaagataagtatatcta |
108 |
Q |
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| T |
45960604 |
tgtagctgttcttagtgcatattctgatctaaaaggtgtgaaactttgtgatggattcataccattaacttgaatttctcttggaagataagtatatcta |
45960703 |
T |
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| Q |
109 |
atcaaatcagtgaaatggttgcaagatttgcaattttgagtcaactccaatttttgacttattaacttttgaggataataatcttcaaagtatttaaaag |
208 |
Q |
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| T |
45960704 |
atcaaatcagcgaagtgtttgcaagatttgcaattttgagtcaactccaattttttac---ttaacttttgaggataataatcttcaaagtagttaaaag |
45960800 |
T |
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| Q |
209 |
caagatcaataaaactaacacaattttccttattgctattgcaaccattattttcaactaataacaccc |
277 |
Q |
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| T |
45960801 |
caagatcaataaaactaaggcaattttccttattgctattgcaaccattcttttcacctaataacaccc |
45960869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 9 - 274
Target Start/End: Complemental strand, 298459 - 298196
Alignment:
| Q |
9 |
tgtagctgttcttagtaca-tattccgatctaaaaggtgcgaaactttttgatggattcacaccctttacttgaatttctcttggaagataagtatatct |
107 |
Q |
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||||||||||||||||||| ||||| |||| |||||||| || ||||| ||||||| ||| ||| || |||||||||||||||||||||||||||||||| |
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| T |
298459 |
tgtagctgttcttagtacaatattctgatcaaaaaggtgtgatactttgtgatggactcataccattaacttgaatttctcttggaagataagtatatct |
298360 |
T |
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| Q |
108 |
aatcaaatcagtgaaatggttgcaagatttgcaattttgagtcaactccaatttttgacttattaacttttgaggataataatcttcaaagtatttaaaa |
207 |
Q |
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| T |
298359 |
aatcaaatcaatgaagtgtttgcaagatttgcaatttggagtcaactccaagtttttactta---acttttgaggataataaacttcaaagtagttaaaa |
298263 |
T |
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| Q |
208 |
gcaagatcaataaaactaacacaattttccttattgctattgcaaccattattttcaactaataaca |
274 |
Q |
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| T |
298262 |
gcaagatcaataaaactaacacaattttccttattgctattgaaaccattcttttcacctaataaca |
298196 |
T |
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