View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3388R-Insertion-18 (Length: 180)
Name: NF3388R-Insertion-18
Description: NF3388R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3388R-Insertion-18 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 9 - 180
Target Start/End: Complemental strand, 43560147 - 43559976
Alignment:
| Q |
9 |
catatcttaaggaagagaacaaaatcacagaaacaacagtaccatctatgcaaataccatcaattacatcacatggttcagcatttctaataaccgattc |
108 |
Q |
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| T |
43560147 |
catatcttaaggaagagaacaaaatcacagaaacaacagtaccatctatgcaaataccatcaattacatcacatggttcagcatttctaataactgattc |
43560048 |
T |
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| Q |
109 |
gagttactatgatgataatggcttaacagaagcttcaagagaaattttcaccagcaagcaagcattggaccc |
180 |
Q |
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| T |
43560047 |
gagttactatgatgataatggcttaacagaagcttcaagagaaattttcaccagcaagcaagcattggaccc |
43559976 |
T |
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Target: chr4; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 38 - 161
Target Start/End: Complemental strand, 1992697 - 1992574
Alignment:
| Q |
38 |
gaaacaacagtaccatctatgcaaataccatcaattacatcacatggttcagcatttctaataaccgattcgagttactatgatgataatggcttaacag |
137 |
Q |
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| T |
1992697 |
gaaacaacagcaccacctatgcaaataccatcagttacatcacatggttcagcatttctaataaccgattcgagttactatgatgataatggtttaacag |
1992598 |
T |
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| Q |
138 |
aagcttcaagagaaattttcacca |
161 |
Q |
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| T |
1992597 |
aagcttcaagagaaattttcacca |
1992574 |
T |
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