View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3388R-Insertion-19 (Length: 157)

Name: NF3388R-Insertion-19
Description: NF3388R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3388R-Insertion-19
NF3388R-Insertion-19
[»] chr1 (1 HSPs)
chr1 (8-157)||(36314869-36315018)
[»] chr8 (20 HSPs)
chr8 (8-157)||(19504275-19504424)
chr8 (8-147)||(19469728-19469867)
chr8 (8-147)||(19540652-19540791)
chr8 (8-147)||(19591907-19592046)
chr8 (8-157)||(19344919-19345068)
chr8 (8-153)||(19355223-19355368)
chr8 (8-144)||(19390341-19390477)
chr8 (8-153)||(19287464-19287609)
chr8 (8-153)||(19173037-19173182)
chr8 (8-153)||(19337203-19337348)
chr8 (8-157)||(19448264-19448413)
chr8 (8-157)||(19532663-19532812)
chr8 (8-157)||(19376367-19376516)
chr8 (8-157)||(19404498-19404647)
chr8 (8-147)||(19410557-19410696)
chr8 (8-147)||(19457576-19457715)
chr8 (8-147)||(19523363-19523502)
chr8 (8-147)||(19468792-19468931)
chr8 (8-147)||(19555713-19555852)
chr8 (8-43)||(19489851-19489886)
[»] chr6 (1 HSPs)
chr6 (8-157)||(19542816-19542965)


Alignment Details
Target: chr1 (Bit Score: 142; Significance: 7e-75; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 7e-75
Query Start/End: Original strand, 8 - 157
Target Start/End: Complemental strand, 36315018 - 36314869
Alignment:
Q  8 actttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagttttgattatcccacaaactttttgatcccaacgatgaagttggg 107  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36315018 actttttgcttcaacaactttacccaaatgggacaaagagtatattatggcagagttttgattatcccacaaactttttgatcccaacgatgaagttggg 36314919  T
Q  108 agttaatcgaaaaacaggacataattggtcattggtttcatggttgactc 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36314918 agttaatcgaaaaacaggacataattggtcattggtttcatggttgactc 36314869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 4e-70; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 4e-70
Query Start/End: Original strand, 8 - 157
Target Start/End: Complemental strand, 19504424 - 19504275
Alignment:
Q  8 actttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagttttgattatcccacaaactttttgatcccaacgatgaagttggg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||| ||||||||||||||||    
T  19504424 actttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagttttgattatccaacatacattttgatctcaacgatgaagttggg 19504325  T
Q  108 agttaatcgaaaaacaggacataattggtcattggtttcatggttgactc 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19504324 agttaatcgaaaaacaggacataattggtcattggtttcatggttgactc 19504275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 6e-57
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 19469867 - 19469728
Alignment:
Q  8 actttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagttttgattatcccacaaactttttgatcccaacgatgaagttggg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || | |||||||||| ||||||||||||    
T  19469867 actttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagtttcgattatcccacagacgtattgatcccaatgatgaagttggg 19469768  T
Q  108 agttaatcgaaaaacaggacataattggtcattggtttca 147  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  19469767 agttaatcgaaaaactggacataaatggtcattggtttca 19469728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 112; E-Value: 6e-57
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 19540791 - 19540652
Alignment:
Q  8 actttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagttttgattatcccacaaactttttgatcccaacgatgaagttggg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || | |||||||||| ||||||||||||    
T  19540791 actttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagtttcgattatcccacagacgtattgatcccaatgatgaagttggg 19540692  T
Q  108 agttaatcgaaaaacaggacataattggtcattggtttca 147  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  19540691 agttaatcgaaaaactggacataaatggtcattggtttca 19540652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 112; E-Value: 6e-57
Query Start/End: Original strand, 8 - 147
Target Start/End: Original strand, 19591907 - 19592046
Alignment:
Q  8 actttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagttttgattatcccacaaactttttgatcccaacgatgaagttggg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || | |||||||||| ||||||||||||    
T  19591907 actttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagtttcgattatcccacagacgtattgatcccaatgatgaagttggg 19592006  T
Q  108 agttaatcgaaaaacaggacataattggtcattggtttca 147  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  19592007 agttaatcgaaaaactggacataaatggtcattggtttca 19592046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 8 - 157
Target Start/End: Original strand, 19344919 - 19345068
Alignment:
Q  8 actttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagttttgattatcccacaaactttttgatcccaacgatgaagttggg 107  Q
    ||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||    ||  ||||||||||||||||||||||||    
T  19344919 actttgtgcttcaacaatttcacccaaatgggacaaatagtttattatggcagagttttgattatcccgatcacactttgatcccaacgatgaagttggg 19345018  T
Q  108 agttaatcgaaaaacaggacataattggtcattggtttcatggttgactc 157  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  19345019 agttaatcgaaaaactggacataattggtcattggtttcatggatgactc 19345068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 8 - 153
Target Start/End: Original strand, 19355223 - 19355368
Alignment:
Q  8 actttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagttttgattatcccacaaactttttgatcccaacgatgaagttggg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||| |   ||||||||||||||||||||| ||    
T  19355223 actttgtgcttcaacaacttcacccaaatgggacaaagagtatactatggcagagttttgactatccaacagatagtttgatcccaacgatgaagttagg 19355322  T
Q  108 agttaatcgaaaaacaggacataattggtcattggtttcatggttg 153  Q
     ||||||||||||||||||||||||||||||||||||||| |||||    
T  19355323 tgttaatcgaaaaacaggacataattggtcattggtttcacggttg 19355368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 97; E-Value: 5e-48
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 19390341 - 19390477
Alignment:
Q  8 actttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagttttgattatcccacaaactttttgatcccaacgatgaagttggg 107  Q
    |||||||||||||| || ||||||||||||| ||||||||| ||||||||||||||||||||||||||    ||  ||||||||||||||||||||||||    
T  19390341 actttgtgcttcaaaaatttcacccaaatggtacaaagagtttattatggcagagttttgattatcccgacgacactttgatcccaacgatgaagttggg 19390440  T
Q  108 agttaatcgaaaaacaggacataattggtcattggtt 144  Q
    |||||||||||||||||||||||||||||||||||||    
T  19390441 agttaatcgaaaaacaggacataattggtcattggtt 19390477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 94; E-Value: 3e-46
Query Start/End: Original strand, 8 - 153
Target Start/End: Original strand, 19287464 - 19287609
Alignment:
Q  8 actttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagttttgattatcccacaaactttttgatcccaacgatgaagttggg 107  Q
    |||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||  |  |||||||||||| |||||||| ||    
T  19287464 actttgtgcttcaaaaaattcacccaaatgggacaaagaatatattatggcagagttttgattatcccacagccactttgatcccaacaatgaagttagg 19287563  T
Q  108 agttaatcgaaaaacaggacataattggtcattggtttcatggttg 153  Q
     ||||| |||||||| |||||||||||||| |||||||||||||||    
T  19287564 tgttaaccgaaaaaccggacataattggtcgttggtttcatggttg 19287609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 90; E-Value: 8e-44
Query Start/End: Original strand, 8 - 153
Target Start/End: Complemental strand, 19173182 - 19173037
Alignment:
Q  8 actttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagttttgattatcccacaaactttttgatcccaacgatgaagttggg 107  Q
    |||||||||||| |||| || |||| || |||||||||||||||||||||||||||||||||||||||| || |  ||||||||||||||||||||| ||    
T  19173182 actttgtgcttcgacaaatttaccccaacgggacaaagagtatattatggcagagttttgattatcccataaccactttgatcccaacgatgaagttagg 19173083  T
Q  108 agttaatcgaaaaacaggacataattggtcattggtttcatggttg 153  Q
     ||||| |||||||| ||||||||||||||||||||||| ||||||    
T  19173082 tgttaaccgaaaaaccggacataattggtcattggtttcgtggttg 19173037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 90; E-Value: 8e-44
Query Start/End: Original strand, 8 - 153
Target Start/End: Original strand, 19337203 - 19337348
Alignment:
Q  8 actttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagttttgattatcccacaaactttttgatcccaacgatgaagttggg 107  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||  | ||  |||| | |||||||||||||| ||    
T  19337203 acttcgtgcttcaacagcttcacccaaatgggacaaagagtatattatggcagagttttgattctcccgtagacactttgttaccaacgatgaagttagg 19337302  T
Q  108 agttaatcgaaaaacaggacataattggtcattggtttcatggttg 153  Q
     |||||||| |||||||||||||||||||||||||||||| |||||    
T  19337303 tgttaatcgtaaaacaggacataattggtcattggtttcacggttg 19337348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 90; E-Value: 8e-44
Query Start/End: Original strand, 8 - 157
Target Start/End: Original strand, 19448264 - 19448413
Alignment:
Q  8 actttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagttttgattatcccacaaactttttgatcccaacgatgaagttggg 107  Q
    ||||||||||||||||| ||||||| |||||| |||||| | | || ||||||||||||||||||||  || || |||||||||||||||||||||| ||    
T  19448264 actttgtgcttcaacaatttcaccccaatgggtcaaagactgtgttgtggcagagttttgattatccatcagacgttttgatcccaacgatgaagttagg 19448363  T
Q  108 agttaatcgaaaaacaggacataattggtcattggtttcatggttgactc 157  Q
     ||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  19448364 cgttaatcaaaaaacaggacataattggtcattggtgtcatggttgactc 19448413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 90; E-Value: 8e-44
Query Start/End: Original strand, 8 - 157
Target Start/End: Complemental strand, 19532812 - 19532663
Alignment:
Q  8 actttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagttttgattatcccacaaactttttgatcccaacgatgaagttggg 107  Q
    ||||||||||||||||| ||||||| |||||| |||||| | | || ||||||||||||||||||||  || || |||||||||||||||||||||| ||    
T  19532812 actttgtgcttcaacaatttcaccccaatgggtcaaagactgtgttgtggcagagttttgattatccatcagacgttttgatcccaacgatgaagttagg 19532713  T
Q  108 agttaatcgaaaaacaggacataattggtcattggtttcatggttgactc 157  Q
     ||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  19532712 cgttaatcaaaaaacaggacataattggtcattggtgtcatggttgactc 19532663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 82; E-Value: 5e-39
Query Start/End: Original strand, 8 - 157
Target Start/End: Original strand, 19376367 - 19376516
Alignment:
Q  8 actttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagttttgattatcccacaaactttttgatcccaacgatgaagttggg 107  Q
    ||||||||||||||||| |||| || |||||| |||||| | | || ||||||||||||||||||||  || || |||||||||||||||||||||| ||    
T  19376367 actttgtgcttcaacaatttcatcccaatgggtcaaagactgttttgtggcagagttttgattatccatcagacgttttgatcccaacgatgaagttagg 19376466  T
Q  108 agttaatcgaaaaacaggacataattggtcattggtttcatggttgactc 157  Q
     |||||||||||||||||| |||||||||||||||| || ||||||||||    
T  19376467 cgttaatcgaaaaacaggatataattggtcattggtgtcctggttgactc 19376516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 82; E-Value: 5e-39
Query Start/End: Original strand, 8 - 157
Target Start/End: Original strand, 19404498 - 19404647
Alignment:
Q  8 actttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagttttgattatcccacaaactttttgatcccaacgatgaagttggg 107  Q
    |||||||||||| |||| ||||||| |||||| |||||| | | || ||||||||||||||||| ||  || || |||||||||||||||||||||| ||    
T  19404498 actttgtgcttcgacaatttcaccccaatgggtcaaagactgtgttgtggcagagttttgattacccatcagacgttttgatcccaacgatgaagttagg 19404597  T
Q  108 agttaatcgaaaaacaggacataattggtcattggtttcatggttgactc 157  Q
    ||||||||||||||||| |||||||||||||||||| |||||||| ||||    
T  19404598 agttaatcgaaaaacagcacataattggtcattggtgtcatggttaactc 19404647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 8 - 147
Target Start/End: Original strand, 19410557 - 19410696
Alignment:
Q  8 actttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagttttgattatcccacaaactttttgatcccaacgatgaagttggg 107  Q
    ||||||||||||||||| |||  || || ||  ||| |||| | || ||||||||||||||||||||  || || |||||||||||| ||||||||| ||    
T  19410557 actttgtgcttcaacaatttcttcccaacggctcaatgagtgtgttgtggcagagttttgattatccatcagacgttttgatcccaatgatgaagttagg 19410656  T
Q  108 agttaatcgaaaaacaggacataattggtcattggtttca 147  Q
     |||||||||||||||||||||||||||||||||||||||    
T  19410657 cgttaatcgaaaaacaggacataattggtcattggtttca 19410696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 8 - 147
Target Start/End: Original strand, 19457576 - 19457715
Alignment:
Q  8 actttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagttttgattatcccacaaactttttgatcccaacgatgaagttggg 107  Q
    ||||||||||||||||| |||  || || ||  ||| |||| | || ||||||||||||||||||||  || || |||||||||||| ||||||||| ||    
T  19457576 actttgtgcttcaacaatttcttcccaacggctcaatgagtgtgttgtggcagagttttgattatccatcagacgttttgatcccaatgatgaagttagg 19457675  T
Q  108 agttaatcgaaaaacaggacataattggtcattggtttca 147  Q
     |||||||||||||||||||||||||||||||||||||||    
T  19457676 cgttaatcgaaaaacaggacataattggtcattggtttca 19457715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 19523502 - 19523363
Alignment:
Q  8 actttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagttttgattatcccacaaactttttgatcccaacgatgaagttggg 107  Q
    ||||||||||||||||| |||  || || ||  ||| |||| | || ||||||||||||||||||||  || || |||||||||||| ||||||||| ||    
T  19523502 actttgtgcttcaacaatttcttcccaacggctcaatgagtgtgttgtggcagagttttgattatccatcagacgttttgatcccaatgatgaagttagg 19523403  T
Q  108 agttaatcgaaaaacaggacataattggtcattggtttca 147  Q
     |||||||||||||||||||||||||||||||||||||||    
T  19523402 cgttaatcgaaaaacaggacataattggtcattggtttca 19523363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 19468931 - 19468792
Alignment:
Q  8 actttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagttttgattatcccacaaactttttgatcccaacgatgaagttggg 107  Q
    |||||||||||| |||| |||| || |||||  ||| |||| | || |||||||||||||||||||||    ||  |||| | |||||||||||||| ||    
T  19468931 actttgtgcttcgacaatttcatcccaatggctcaatgagtgtgttgtggcagagttttgattatcccgatgacactttggttccaacgatgaagttagg 19468832  T
Q  108 agttaatcgaaaaacaggacataattggtcattggtttca 147  Q
     |||||||| ||||||||||||||||||||||||||||||    
T  19468831 cgttaatcggaaaacaggacataattggtcattggtttca 19468792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 19555852 - 19555713
Alignment:
Q  8 actttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagttttgattatcccacaaactttttgatcccaacgatgaagttggg 107  Q
    |||||||||||| |||| |||| || |||||  ||| |||| | || |||||||||||||||||||||    ||  |||| | |||||||||||||| ||    
T  19555852 actttgtgcttcgacaatttcatcccaatggctcaatgagtgtgttgtggcagagttttgattatcccgatgacactttggttccaacgatgaagttagg 19555753  T
Q  108 agttaatcgaaaaacaggacataattggtcattggtttca 147  Q
     |||||||| ||||||||||||||||||||||||||||||    
T  19555752 cgttaatcggaaaacaggacataattggtcattggtttca 19555713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 19489851 - 19489886
Alignment:
Q  8 actttgtgcttcaacaacttcacccaaatgggacaa 43  Q
    |||| ||| |||||||||||||||||||||||||||    
T  19489851 acttggtgattcaacaacttcacccaaatgggacaa 19489886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 8 - 157
Target Start/End: Original strand, 19542816 - 19542965
Alignment:
Q  8 actttgtgcttcaacaacttcacccaaatgggacaaagagtatattatggcagagttttgattatcccacaaactttttgatcccaacgatgaagttggg 107  Q
    ||||||| ||||||||| ||||||| |||||  |||  ||| | |||||||||||||||||| ||| |  | ||| || ||| |||| ||||||||| ||    
T  19542816 actttgttcttcaacaatttcaccccaatggttcaacaagtgttttatggcagagttttgatcatctcttacactgttggattccaatgatgaagttagg 19542915  T
Q  108 agttaatcgaaaaacaggacataattggtcattggtttcatggttgactc 157  Q
      |||| |||| ||| |||||||||||||| || ||||||||| ||||||    
T  19542916 tattaaccgaataaccggacataattggtctttagtttcatggatgactc 19542965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University