View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3388R-Insertion-2 (Length: 998)

Name: NF3388R-Insertion-2
Description: NF3388R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3388R-Insertion-2
NF3388R-Insertion-2
[»] chr7 (12 HSPs)
chr7 (687-967)||(20145815-20146098)
chr7 (683-951)||(14987006-14987276)
chr7 (683-951)||(15416617-15416887)
chr7 (683-967)||(2546914-2547198)
chr7 (738-919)||(17600583-17600766)
chr7 (683-931)||(24832402-24832657)
chr7 (738-963)||(3743386-3743620)
chr7 (738-924)||(4173426-4173615)
chr7 (738-848)||(10649207-10649318)
chr7 (789-905)||(18046386-18046501)
chr7 (860-905)||(14961170-14961215)
chr7 (860-905)||(15390642-15390687)
[»] chr2 (7 HSPs)
chr2 (683-967)||(18929239-18929526)
chr2 (683-967)||(26650841-26651130)
chr2 (683-944)||(17402750-17403013)
chr2 (738-960)||(25520385-25520610)
chr2 (738-921)||(31404020-31404205)
chr2 (693-810)||(19878972-19879090)
chr2 (738-921)||(24543870-24544054)
[»] chr5 (14 HSPs)
chr5 (683-944)||(19217915-19218176)
chr5 (683-931)||(20064397-20064653)
chr5 (685-931)||(20060802-20061056)
chr5 (683-880)||(20713228-20713426)
chr5 (683-880)||(23210042-23210240)
chr5 (687-931)||(20058571-20058824)
chr5 (690-849)||(23379314-23379474)
chr5 (683-861)||(25951334-25951513)
chr5 (738-905)||(17167249-17167417)
chr5 (750-905)||(19923956-19924112)
chr5 (789-921)||(24878356-24878489)
chr5 (750-905)||(19926683-19926839)
chr5 (738-797)||(21165282-21165342)
chr5 (863-905)||(17987482-17987524)
[»] chr8 (14 HSPs)
chr8 (683-967)||(28371036-28371324)
chr8 (683-944)||(9218105-9218367)
chr8 (842-966)||(10660970-10661095)
chr8 (739-921)||(9286315-9286498)
chr8 (738-883)||(16600591-16600737)
chr8 (738-880)||(23540207-23540351)
chr8 (688-849)||(10661748-10661911)
chr8 (738-814)||(24577332-24577408)
chr8 (769-910)||(13110204-13110345)
chr8 (833-880)||(26136195-26136242)
chr8 (771-910)||(18672125-18672261)
chr8 (835-905)||(22713681-22713751)
chr8 (738-905)||(25095053-25095223)
chr8 (863-905)||(9006931-9006973)
[»] chr3 (15 HSPs)
chr3 (687-962)||(24698999-24699275)
chr3 (684-967)||(15686861-15687148)
chr3 (738-963)||(26010836-26011067)
chr3 (738-958)||(13428700-13428921)
chr3 (738-944)||(4769742-4769949)
chr3 (738-967)||(4765677-4765916)
chr3 (683-880)||(7148790-7148988)
chr3 (683-888)||(9033415-9033622)
chr3 (738-964)||(4832504-4832735)
chr3 (683-877)||(29614529-29614724)
chr3 (738-915)||(23378488-23378668)
chr3 (741-880)||(16242928-16243069)
chr3 (863-905)||(13409834-13409876)
chr3 (837-911)||(8737234-8737308)
chr3 (837-911)||(9089472-9089546)
[»] chr6 (14 HSPs)
chr6 (741-967)||(22397545-22397775)
chr6 (683-880)||(16177304-16177502)
chr6 (56-193)||(17365390-17365527)
chr6 (763-944)||(17524816-17524998)
chr6 (685-880)||(1177150-1177349)
chr6 (683-876)||(15830026-15830220)
chr6 (741-905)||(17947842-17948007)
chr6 (769-921)||(14762938-14763090)
chr6 (789-921)||(18713709-18713842)
chr6 (213-254)||(17365558-17365599)
chr6 (683-810)||(31126082-31126209)
chr6 (837-931)||(31126249-31126351)
chr6 (863-905)||(25945847-25945889)
chr6 (360-437)||(17365687-17365764)
[»] chr4 (5 HSPs)
chr4 (701-951)||(11361615-11361866)
chr4 (683-941)||(9409083-9409346)
chr4 (740-921)||(16675086-16675269)
chr4 (823-880)||(5358040-5358097)
chr4 (863-905)||(18558473-18558515)
[»] chr1 (12 HSPs)
chr1 (683-926)||(20146169-20146420)
chr1 (738-944)||(11013817-11014026)
chr1 (738-915)||(33103021-33103201)
chr1 (750-921)||(36571655-36571826)
chr1 (752-921)||(22607834-22608003)
chr1 (738-902)||(20150422-20150588)
chr1 (738-877)||(13202052-13202192)
chr1 (210-265)||(20839758-20839813)
chr1 (741-905)||(17615274-17615439)
chr1 (738-801)||(13232737-13232801)
chr1 (789-878)||(22620063-22620153)
chr1 (849-921)||(20866221-20866293)
[»] scaffold0555 (1 HSPs)
scaffold0555 (683-926)||(5599-5851)
[»] scaffold0264 (1 HSPs)
scaffold0264 (686-967)||(20795-21077)
[»] scaffold0016 (1 HSPs)
scaffold0016 (690-849)||(12991-13151)
[»] scaffold0337 (2 HSPs)
scaffold0337 (750-921)||(17221-17392)
scaffold0337 (763-921)||(4546-4703)
[»] scaffold0002 (1 HSPs)
scaffold0002 (738-901)||(374113-374275)
[»] scaffold0142 (2 HSPs)
scaffold0142 (738-890)||(20572-20725)
scaffold0142 (108-193)||(12426-12511)
[»] scaffold1102 (1 HSPs)
scaffold1102 (738-873)||(859-996)
[»] scaffold0795 (1 HSPs)
scaffold0795 (684-730)||(5989-6035)


Alignment Details
Target: chr7 (Bit Score: 160; Significance: 9e-85; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 160; E-Value: 9e-85
Query Start/End: Original strand, 687 - 967
Target Start/End: Complemental strand, 20146098 - 20145815
Alignment:
Q  687 catggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcacctat 785  Q
    ||||||||||||| |||| |||||||| |||||||||||||||| |  || ||||||||||  |||||| |||||  |||||||||||||||||||| ||    
T  20146098 catggaaggagtgctgatcgtgggattagtttctttccaagttatttcctatgtataaatagtagtttttcataggtaaaacgggtcgcaaatcacccat 20145999  T
Q  786 acaaaattctaaaacattcgaagtaccggagcgagagaa-agagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgt 884  Q
     || |||||||||||| ||||||||| || ||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  20145998 gcataattctaaaacactcgaagtactggcgcgagagaagagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgt 20145899  T
Q  885 attttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgctttt-aaacctttttctgtcgaaagacgcca 967  Q
    ||| ||||||||||| ||||| |||||||||||| ||||||| || ||||||||||| ||||||||||||||||||||||||||    
T  20145898 attctacctttccttgaagtttctgcaatttaaagttaatgcatttactttgcttttaaaacctttttctgtcgaaagacgcca 20145815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 683 - 951
Target Start/End: Original strand, 14987006 - 14987276
Alignment:
Q  683 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 781  Q
    ||||||||||||||||| |||| ||| |||  |||||||||||  ||| | ||||||||||||||||||||||||||||  |||| |||||||| |||||    
T  14987006 tctacatggaaggagtgatgatcgtgagataagtttctttccac-ttattttctttgtataaataagagttttccatagggaaaatgggtcgcatatcac 14987104  T
Q  782 ctatacaaaattctaaaacattcgaagtaccggagcgagag-aaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 880  Q
    ||||||| |||||||||||| |||||||||||| ||||||| ||||||| |||||||||||||||||| ||||| |||||| ||||||||||||||||      
T  14987105 ctatacataattctaaaacactcgaagtaccggtgcgagagaaaagagtcataaagaatgtatgtaaaagatttttcgaaccacctttatttttaatgag 14987204  T
Q  881 ttgta-ttttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaccttttt 951  Q
     |||| ||||| |||| ||||||||| || |||||||||||||||||||| ||||| |||||||||| ||||    
T  14987205 atgtatttttatcttttctttaagtttctccaatttaaacttaatgcctttacttttcttttaaaccctttt 14987276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 683 - 951
Target Start/End: Original strand, 15416617 - 15416887
Alignment:
Q  683 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 781  Q
    ||||||||||||||||| |||| ||| |||  |||||||||||  ||| | ||||||||||||||||||||||||||||  |||| |||||||| |||||    
T  15416617 tctacatggaaggagtgatgatcgtgagataagtttctttccac-ttattttctttgtataaataagagttttccatagggaaaatgggtcgcatatcac 15416715  T
Q  782 ctatacaaaattctaaaacattcgaagtaccggagcgagag-aaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 880  Q
    ||||||| |||||||||||| |||||||||||| ||||||| ||||||| |||||||||||||||||| ||||| |||||| ||||||||||||||||      
T  15416716 ctatacataattctaaaacactcgaagtaccggtgcgagagaaaagagtcataaagaatgtatgtaaaagatttttcgaaccacctttatttttaatgag 15416815  T
Q  881 ttgta-ttttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaccttttt 951  Q
     |||| ||||| |||| ||||||||| || |||||||||||||||||||| ||||| |||||||||| ||||    
T  15416816 atgtatttttatcttttctttaagtttctccaatttaaacttaatgcctttacttttcttttaaaccctttt 15416887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 683 - 967
Target Start/End: Complemental strand, 2547198 - 2546914
Alignment:
Q  683 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtat-ctttgtataaataagagttttccataga-aaaacgggtcgcaaatca 780  Q
    |||||||||||||||||||||| |||||||| ||||||||| | |||| | | || ||||||| ||| ||||||||||||  ||||||||||||||||||    
T  2547198 tctacatggaaggagtgttgatcgtgggattagtttctttcta-gttatttttctatgtataagtaatagttttccatagggaaaacgggtcgcaaatca 2547100  T
Q  781 cctatacaaaattctaaaacattcgaagtaccggagcgagagaaaga-gtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgc 879  Q
    |||||| | |||||||||||| |||||||||||   ||||||||| | || |||||||||| |||||||||||||| |  || |||||||||||     |    
T  2547099 cctatatagaattctaaaacactcgaagtaccgacccgagagaaaaaagtcataaagaatggatgtaaaggatttggcagaccacctttatttta----c 2547004  T
Q  880 attgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaa--cctttttctgtcgaaagacgcca 967  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||  | |||||| ||||||||||||||    
T  2547003 attgtattttacctttcctttaagtttctgcaatttaaacttaatgccttttctttgcttttaaaaccttttttccgtcgaaagacgcca 2546914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 738 - 919
Target Start/End: Complemental strand, 17600766 - 17600583
Alignment:
Q  738 tgtataaataagagttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagag-aaagagtgataaa 835  Q
    ||||||||||  ||||||||||| | |||||| ||||||||||||||||||| |||||||||||| ||||||||||||  |||||| ||||||| |||||    
T  17600766 tgtataaatagtagttttccataaggaaaacgtgtcgcaaatcacctatacagaattctaaaacactcgaagtaccggcacgagaggaaagagtcataaa 17600667  T
Q  836 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaac 919  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||| ||| ||||||||||||||  || |||||||||    
T  17600666 gaatgtatgtaaaggatttgtcgaacaacctttatttttaatgctttgtatgttatctttcctttaagtttatggaatttaaac 17600583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 683 - 931
Target Start/End: Complemental strand, 24832657 - 24832402
Alignment:
Q  683 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 781  Q
    ||||||||||||||||| ||||  || |||| ||||||||| |  ||| |  || ||||||||||| |||||| |||||  ||||||||||||||||| |    
T  24832657 tctacatggaaggagtggtgatcatgagattagtttctttctac-ttatttcctatgtataaataatagtttttcatagggaaaacgggtcgcaaatcgc 24832559  T
Q  782 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaa-gagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 880  Q
    ||||||| |||| ||||||| |||||||| ||| || ||||||| |||| ||||||||||||||||||| ||||||||||| ||| ||||||||||||||    
T  24832558 ctatacagaatt-taaaacactcgaagtatcggcgcaagagaaaagagtcataaagaatgtatgtaaagaatttgtcgaaccaccattatttttaatgca 24832460  T
Q  881 -------ttgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaa 931  Q
           |||||||||  |||| ||||||||| |||||||||||||||||||| ||||    
T  24832459 cttgcatttgtattttttcttttctttaagtttctgcaatttaaacttaatgcattaa 24832402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 738 - 963
Target Start/End: Complemental strand, 3743620 - 3743386
Alignment:
Q  738 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaa-cattcgaagtaccggagcgagagaaa-gagtgataa 834  Q
    ||||||||||  ||||||||| ||| |||||||||||||||||||||||||| |||||||||| || |||||||||||| ||   ||||| |||| ||||    
T  3743620 tgtataaatagtagttttccaaagagaaaacgggtcgcaaatcacctatacataattctaaaaacactcgaagtaccggtgctgaagaaaagagtcataa 3743521  T
Q  835 agaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaattt-aaactt-aatgccttaac 932  Q
    | |||||||  |||||||||||||||| ||||||||||||||||| ||||| ||||  ||||||| ||| | ||||||||| |||||| |||||||| ||    
T  3743520 aaaatgtatacaaaggatttgtcgaaccacctttatttttaatgccttgtactttatttttccttcaagattctgcaatttcaaacttgaatgcctttac 3743421  T
Q  933 tttgcttttaaa----cctttttctgtcgaaagac 963  Q
    ||| || |||||    ||||||| |||||||||||    
T  3743420 tttactgttaaaaaaccctttttttgtcgaaagac 3743386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 738 - 924
Target Start/End: Original strand, 4173426 - 4173615
Alignment:
Q  738 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaa-gagtgataaa 835  Q
    ||||||||||  || |||||||||  ||||||||||||||||| |||||| | |||||||||||| |||||||| ||  |||||||||| |||| |||||    
T  4173426 tgtataaatattagatttccatagggaaaacgggtcgcaaatcgcctatagagaattctaaaacactcgaagtatcgacgcgagagaaaagagtcataaa 4173525  T
Q  836 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgca-ttgtattttacctttcctttaagttcctgcaatttaaacttaat 924  Q
    ||||||||||||||||||||||||||||  ||||| ||||||||| ||| ||||    ||| ||||||||| ||||||||||||||||||    
T  4173526 gaatgtatgtaaaggatttgtcgaactagttttatctttaatgcacttgcatttgtatttttctttaagtttctgcaatttaaacttaat 4173615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 738 - 848
Target Start/End: Original strand, 10649207 - 10649318
Alignment:
Q  738 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaa-gagtgataaa 835  Q
    ||||||||||  |||| |||||||  |||| | |||||||||||| |||| ||| ||| |||||| ||||||||||||  ||||||||| |||| |||||    
T  10649207 tgtataaatagtagttgtccatagggaaaatgagtcgcaaatcacttatagaaatttc-aaaacactcgaagtaccggcacgagagaaaagagttataaa 10649305  T
Q  836 gaatgtatgtaaa 848  Q
    |||||||||||||    
T  10649306 gaatgtatgtaaa 10649318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 789 - 905
Target Start/End: Complemental strand, 18046501 - 18046386
Alignment:
Q  789 aaattctaaaacattcgaagtaccggagcgagagaaagagtgataaagaatgtatgtaa-aggatttgtcgaactacctttatttttaatgcattgtatt 887  Q
    ||||||||||||| | |||||||||| |||||| ||| ||  ||| | ||||| ||||| | |||||||||||| ||||||| |||||||||| || | |    
T  18046501 aaattctaaaacaattgaagtaccggcgcgaga-aaaaaggcatacataatgtgtgtaatatgatttgtcgaaccaccttta-ttttaatgcaatgcaat 18046404  T
Q  888 ttacctttcctttaagtt 905  Q
    |||||||| |||||||||    
T  18046403 ttaccttttctttaagtt 18046386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 860 - 905
Target Start/End: Complemental strand, 14961215 - 14961170
Alignment:
Q  860 actacctttatttttaatgcattgtattttacctttcctttaagtt 905  Q
    ||||||||||||||||||||| || ||||||||||| |||| ||||    
T  14961215 actacctttatttttaatgcaatgcattttaccttttctttgagtt 14961170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 860 - 905
Target Start/End: Complemental strand, 15390687 - 15390642
Alignment:
Q  860 actacctttatttttaatgcattgtattttacctttcctttaagtt 905  Q
    ||||||||||||||||||||| || ||||||||||| |||| ||||    
T  15390687 actacctttatttttaatgcaatgcattttaccttttctttgagtt 15390642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 160; Significance: 9e-85; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 9e-85
Query Start/End: Original strand, 683 - 967
Target Start/End: Complemental strand, 18929526 - 18929239
Alignment:
Q  683 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 781  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||| | ||| || |||||||  ||||||||| ||  |||| |||| |||||||||    
T  18929526 tctacatggaaggagtgttgatcgtgggattagtttctttccaagttattttctatgcataaatagtagttttccaaagggaaaatgggttgcaaatcac 18929427  T
Q  782 ctatacaaaattctaaaacattcgaagtaccggagcgagagaa-agagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 880  Q
    ||||| | |||||||||||| |||||||||||| | ||||||| | ||| |||||||||||||||||| ||||| |||||| ||||||||||||||||||    
T  18929426 ctatatagaattctaaaacactcgaagtaccggcgtgagagaagatagtcataaagaatgtatgtaaaagatttatcgaaccacctttatttttaatgca 18929327  T
Q  881 ttgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgctttt-aaacctttttctgtcgaaagacgcca 967  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||| |||||||| ||||||    
T  18929326 ttgtattttacctttcctttaagtttctgcaatttaaacttaatgcctttactttgcttttaaaacctttttatgtcgaaatacgcca 18929239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 683 - 967
Target Start/End: Complemental strand, 26651130 - 26650841
Alignment:
Q  683 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtat-ctttgtataaataagagttttccataga-aaaacgggtcgcaaatca 780  Q
    ||||||||||| ||||| | || |||||||| ||||||||| | |||| | | || ||||||||||||||||||||||||  ||||| ||||||||||||    
T  26651130 tctacatggaatgagtgctaatcgtgggattggtttctttcta-gttatttttctatgtataaataagagttttccatagggaaaacaggtcgcaaatca 26651032  T
Q  781 cctatacaaaattctaaaacattcgaagtaccggagcgagagaaa-gagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgc 879  Q
    |||||||| |||||||||||| |||||| ||||  |||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||| |||| |    
T  26651031 cctatacagaattctaaaacactcgaagcaccgacgcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttataatcc 26650932  T
Q  880 attgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaa---cctttttctgtcgaaagacgcca 967  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||| ||| ||||||||||||||   | |||||||||||||||| ||||    
T  26650931 attgtattttacctttcctttaagtttctgcaatttaaacttcatgtctttactttgcttttaaaacccttttttctgtcgaaagaagcca 26650841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 683 - 944
Target Start/End: Complemental strand, 17403013 - 17402750
Alignment:
Q  683 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctt-tgtataaataagagttttccata-gaaaaacgggtcgcaaatca 780  Q
    ||||| |||||||||||||||| ||||||||    | |||||| |||| | |||| ||||||||||  |||| |||||| | ||||| ||||||||||||    
T  17403013 tctacgtggaaggagtgttgatcgtgggattatgctttttcca-gttattttcttatgtataaatagtagttctccataaggaaaacaggtcgcaaatca 17402915  T
Q  781 cctatacaaaattctaaaacattcgaagtaccggagcgagagaaaga-gtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgc 879  Q
    |||||| | |||||||||||| || |||||||||  ||||||||| | || ||||||||||||||||||||||||||  ||| |||||||||||||||||    
T  17402914 cctatatagaattctaaaacactctaagtaccggcacgagagaaaaaagttataaagaatgtatgtaaaggatttgtataaccacctttatttttaatgc 17402815  T
Q  880 attgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaa 944  Q
    |||||||||||  ||||||||||||| |||||||||||||||| |||||| ||||||||||||||    
T  17402814 attgtattttatatttcctttaagtttctgcaatttaaacttattgcctttactttgcttttaaa 17402750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 738 - 960
Target Start/End: Original strand, 25520385 - 25520610
Alignment:
Q  738 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaa-gagtgataaa 835  Q
    ||||||||||| ||||||||||||  ||||||||| |||||||||||||||| |||| ||||||| |||||||  ||| |||||||||| |||| ||| |    
T  25520385 tgtataaataatagttttccatagggaaaacgggttgcaaatcacctatacagaattataaaacactcgaagtgacggcgcgagagaaaagagtcataca 25520484  T
Q  836 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaacttt 935  Q
     |||||||||||||| ||||||||||  ||||||||||||||||| |||| |||| |||| |||||| || ||||||||| ||||||||||||| |||||    
T  25520485 taatgtatgtaaaggttttgtcgaacctcctttatttttaatgcaatgtagtttatcttttctttaactttctgcaattttaacttaatgcctttacttt 25520584  T
Q  936 gctttt-aaacctttttctgtcgaaa 960  Q
    |||||| ||||||||||| |||||||    
T  25520585 gcttttaaaacctttttcggtcgaaa 25520610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 738 - 921
Target Start/End: Original strand, 31404020 - 31404205
Alignment:
Q  738 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaa-gagtgataaa 835  Q
    ||||||||||  |||||||||||   |||| |||||||||||||| |||  ||| |||||||||| |||||||||||| |||||||||| |||| ||| |    
T  31404020 tgtataaatagtagttttccatattgaaaatgggtcgcaaatcacttattgaaa-ttctaaaacactcgaagtaccggcgcgagagaaaagagttataca 31404118  T
Q  836 gaatgtatgtaaag-gatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 921  Q
    |||||||||||||  |||||||||||| ||||||  |||||||||| || | ||||||||| ||||||||| ||||| |||||||||    
T  31404119 gaatgtatgtaaaatgatttgtcgaaccaccttttattttaatgcaatgcaatttaccttttctttaagtttctgcattttaaactt 31404205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 693 - 810
Target Start/End: Complemental strand, 19879090 - 19878972
Alignment:
Q  693 aggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccatag-aaaaacgggtcgcaaatcacctatacaaaa 791  Q
    |||||||||||| |||||||| |||||||||||| ||| | ||| |||| |||||  |||||||||||| ||||||||||||||||||||||||||| ||    
T  19879090 aggagtgttgatcgtgggattagtttctttccaacttattttctatgtaaaaatagtagttttccataggaaaaacgggtcgcaaatcacctatacagaa 19878991  T
Q  792 ttctaaaacattcgaagta 810  Q
    |||||||||| | ||||||    
T  19878990 ttctaaaacactagaagta 19878972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 738 - 921
Target Start/End: Complemental strand, 24544054 - 24543870
Alignment:
Q  738 tgtataaataagagttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaa-gagtgataaa 835  Q
    ||||||||||  |||||||||||| ||||||||||| |||||||| |||| ||| ||  | |||| |||||||| ||| |||||||||| || | ||| |    
T  24544054 tgtataaatagtagttttccataggaaaaacgggtcacaaatcacttatagaaatttg-acaacactcgaagtatcggcgcgagagaaaagatttataca 24543956  T
Q  836 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 921  Q
     ||| |||||||||||||| | |||| |||||||||||||||||| || | ||||  ||||||  |||||  |||||||| |||||    
T  24543955 taatatatgtaaaggatttctggaaccacctttatttttaatgcaatgcaatttatttttcctacaagtttttgcaattttaactt 24543870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 144; Significance: 3e-75; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 683 - 944
Target Start/End: Original strand, 19217915 - 19218176
Alignment:
Q  683 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 781  Q
    |||||||| |||||||| || | |||||||| ||||||||||| |||| | | | |||||||||||  |||||||||||  |||||||||||||||||||    
T  19217915 tctacatgaaaggagtgctggtcgtgggattagtttctttcca-gttattttttatgtataaataactgttttccatagggaaaacgggtcgcaaatcac 19218013  T
Q  782 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaa-gagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 880  Q
    ||||||||| |||||||||| || ||||||||| |||||||||| |||  ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  19218014 ctatacaaa-ttctaaaacactcaaagtaccggcgcgagagaaaagagccataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgca 19218112  T
Q  881 ttgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaa 944  Q
    ||||||||||| ||||||||||||| || |||||||||||||||||||| ||||||||||||||    
T  19218113 ttgtattttacatttcctttaagtttctacaatttaaacttaatgcctttactttgcttttaaa 19218176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 683 - 931
Target Start/End: Original strand, 20064397 - 20064653
Alignment:
Q  683 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 781  Q
    ||||||||||||| ||| ||||||||||||| |||||||||||  ||| |  || ||||||||||| ||||||||||||  ||||||||||||||||| |    
T  20064397 tctacatggaaggtgtgctgattgtgggattagtttctttccac-ttatttactatgtataaataatagttttccatagggaaaacgggtcgcaaatcgc 20064495  T
Q  782 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaa-gagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 880  Q
    ||||||| |||||||||||| |  ||||||||| || ||||||| |||| ||||| |||||||||||| ||||||| |||| ||||||||||||||||||    
T  20064496 ctatacagaattctaaaacactgaaagtaccggtgcaagagaaaagagttataaaaaatgtatgtaaatgatttgttgaaccacctttatttttaatgca 20064595  T
Q  881 -------ttgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaa 931  Q
           || ||||||  |||| ||||||||| |||||||||||||||||||| ||||    
T  20064596 cttgcatttatattttttcttttctttaagtttctgcaatttaaacttaatgcattaa 20064653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 685 - 931
Target Start/End: Complemental strand, 20061056 - 20060802
Alignment:
Q  685 tacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccatagaaaa-acgggtcgcaaatcacct 783  Q
    |||||| || ||||| |||| |||||||| ||||||||| || ||| |  || ||||||||| | ||||||||||||   | |||||| ||||||| |||    
T  20061056 tacatgtaatgagtgatgatcgtgggattagtttctttc-aacttacttcctatgtataaatgatagttttccatagggtagacgggttgcaaatcgcct 20060958  T
Q  784 atacaaaattctaaaacattcgaagtaccggagcgagagaaa-gagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca-- 880  Q
    ||||| |||||||||||||| ||| |||||| || ||||||| |||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||      
T  20060957 atacagaattctaaaacatttgaactaccggcgcaagagaaaagagtcataaacaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcact 20060858  T
Q  881 -----ttgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaa 931  Q
         |||||||||  |||| ||||||||| |||||||||||||||||||| ||||    
T  20060857 tgcatttgtattttttcttttctttaagtttctgcaatttaaacttaatgcattaa 20060802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 683 - 880
Target Start/End: Complemental strand, 20713426 - 20713228
Alignment:
Q  683 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 781  Q
    ||||||||||||||||| |||| |||||||| ||||||||| || ||| |  || ||||||||||| ||||||||||||  ||||||||||||||||| |    
T  20713426 tctacatggaaggagtgctgatcgtgggattagtttctttc-aacttatttcctatgtataaataatagttttccatagggaaaacgggtcgcaaatcgc 20713328  T
Q  782 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaa-gagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 880  Q
     |||||| |||||||||||| ||||| |||||  || ||||||| |||| |||||||||||||||||  ||||||| |||| ||||||||||||||||||    
T  20713327 atatacagaattctaaaacactcgaaataccgatgcaagagaaaagagtcataaagaatgtatgtaacagatttgttgaacaacctttatttttaatgca 20713228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 683 - 880
Target Start/End: Original strand, 23210042 - 23210240
Alignment:
Q  683 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 781  Q
    |||| ||||||||||||||||| |||||||| |||||||||||  ||| |  || ||||||||||| ||||| ||||||  ||||| |||||||||||      
T  23210042 tctaaatggaaggagtgttgatcgtgggattagtttctttccac-ttatttcctatgtataaataatagtttcccatagggaaaacaggtcgcaaatcgt 23210140  T
Q  782 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaa-gagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 880  Q
     |||||| |||||||||||| |||||||||||| || ||||||| ||||  |||||||||||||||||||||||||||||| || |||||||||||||||    
T  23210141 atatacataattctaaaacactcgaagtaccggcgcaagagaaaagagtcttaaagaatgtatgtaaaggatttgtcgaaccacttttatttttaatgca 23210240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 687 - 931
Target Start/End: Original strand, 20058571 - 20058824
Alignment:
Q  687 catggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccata-gaaaaacgggtcgcaaatcacctat 785  Q
    ||||||||||||| |||| |||||||| |||| ||| | | ||| |  || ||||||||| | ||||||||||| |  | || ||| ||||||| |||||    
T  20058571 catggaaggagtgctgatcgtgggattagttttttttccacttacttcctatgtataaatgatagttttccataaggtagacaggttgcaaatcgcctat 20058670  T
Q  786 acaaaattctaaaacattcgaagtaccggagcgagagaaa-gagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca---- 880  Q
     |||||||||||||||||| ||||||  | || ||||||| |||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||        
T  20058671 gcaaaattctaaaacattcaaagtactagcgcaagagaaaagagtcataaagaatgtatgtaaagaatttgtcgaaccacctttatttttaatgcaattg 20058770  T
Q  881 ---ttgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaa 931  Q
       |||||||||   |||  |||||||| |||||||||||||||||||| ||||    
T  20058771 catttgtattttttattttatttaagtttctgcaatttaaacttaatgcattaa 20058824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 690 - 849
Target Start/End: Original strand, 23379314 - 23379474
Alignment:
Q  690 ggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcacctataca 788  Q
    ||||||||||||||| |||||||| |||||||| |   ||| | ||| ||||||||||  ||||||||||||  ||||||||||||||||||||||| ||    
T  23379314 ggaaggagtgttgatcgtgggattagtttctttactc-ttattttctatgtataaatagtagttttccatagggaaaacgggtcgcaaatcacctatgca 23379412  T
Q  789 aaattctaaaacattcgaagtaccggagcgagag-aaagagtgataaagaatgtatgtaaag 849  Q
     |||||||||||| |||||||||  | ||||||| ||||||| |||||||||||||||||||    
T  23379413 gaattctaaaacactcgaagtactagcgcgagagaaaagagtcataaagaatgtatgtaaag 23379474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 683 - 861
Target Start/End: Complemental strand, 25951513 - 25951334
Alignment:
Q  683 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 781  Q
    |||||||||||||||||||||| ||| |||| |||||||| | | ||| |  |  ||||||||||| ||||||||||||  ||||| ||||| ||||| |    
T  25951513 tctacatggaaggagtgttgatcgtgagattagtttcttttccacttatttccgatgtataaataatagttttccataggtaaaacaggtcgtaaatcgc 25951414  T
Q  782 ctatacaaaattctaaaacattcgaagtaccgg-agcgagagaaagagtgataaagaatgtatgtaaaggatttgtcgaac 861  Q
     |||||| |||||||||||| || ||||||||  || |||| ||||||| |||||||||||||||||| ||||||||||||    
T  25951413 ttatacataattctaaaacactcaaagtaccgacagagaga-aaagagtcataaagaatgtatgtaaaagatttgtcgaac 25951334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 738 - 905
Target Start/End: Original strand, 17167249 - 17167417
Alignment:
Q  738 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaa-gagtgataaa 835  Q
    ||||||||||  |||||||||| |  |||||||||| |||||||| |||| ||| ||||| ||||   |||||||| | |||||||||| |||| ||| |    
T  17167249 tgtataaatagtagttttccatggggaaaacgggtcccaaatcacttatagaaa-ttctacaacaccagaagtaccagcgcgagagaaaagagtaataca 17167347  T
Q  836 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagtt 905  Q
     ||||||||||||||||||||||||| |||||||||||||||| | || | |||| |||| |||||||||    
T  17167348 aaatgtatgtaaaggatttgtcgaaccacctttatttttaatgtaatgcaatttatcttttctttaagtt 17167417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 750 - 905
Target Start/End: Original strand, 19923956 - 19924112
Alignment:
Q  750 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaa-gagtgataaagaatgtatgtaa 847  Q
    ||||||||||||  |||| |||||||||| ||| |||| ||| |||||  ||| | ||| ||| || |||||||||| |||| ||| ||||||||| |||    
T  19923956 agttttccatagggaaaatgggtcgcaaaccacttatagaaa-ttctaccacacttgaattactggcgcgagagaaaagagttatacagaatgtatataa 19924054  T
Q  848 aggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagtt 905  Q
    | |||||||||||| |||||||||||||||||| |||| |||| |||| |||||||||    
T  19924055 aagatttgtcgaaccacctttatttttaatgcaatgtaatttatcttttctttaagtt 19924112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 789 - 921
Target Start/End: Complemental strand, 24878489 - 24878356
Alignment:
Q  789 aaattctaaaacattcgaagtaccggagcgagagaaa-gagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtatt 887  Q
    |||||||| |||| ||||| |||||  |||||||||| |||| |||   ||| ||||||||||||||||| ||| |||||||||||||||||| || | |    
T  24878489 aaattctacaacactcgaattaccgacgcgagagaaaagagttatacgtaatttatgtaaaggatttgtcaaaccacctttatttttaatgcaatgcaat 24878390  T
Q  888 ttacctttcctttaagttcctgcaatttaaactt 921  Q
    ||| |||| ||||||||| ||||  |||||||||    
T  24878389 ttatcttttctttaagtttctgcgttttaaactt 24878356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 750 - 905
Target Start/End: Original strand, 19926683 - 19926839
Alignment:
Q  750 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaag-agtgataaagaatgtatgtaa 847  Q
    ||||||||||||  |||| |||||||||| ||| |||| ||| |||||  ||| | ||| ||| || ||||||||||  ||| ||| ||||||||  |||    
T  19926683 agttttccatagggaaaatgggtcgcaaaccacttatagaaa-ttctaccacacttgaattactggcgcgagagaaaatagttatacagaatgtaaataa 19926781  T
Q  848 aggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagtt 905  Q
    | |||||||||||| |||||||||||||||||| || | |||| |||| |||||||||    
T  19926782 aagatttgtcgaaccacctttatttttaatgcaatgcaatttatcttttctttaagtt 19926839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 738 - 797
Target Start/End: Complemental strand, 21165342 - 21165282
Alignment:
Q  738 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaa 797  Q
    ||||||||||| ||||||||||||  ||||||||||||||||| |||||| | ||||||||    
T  21165342 tgtataaataatagttttccatagggaaaacgggtcgcaaatcgcctatatagaattctaa 21165282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 863 - 905
Target Start/End: Complemental strand, 17987524 - 17987482
Alignment:
Q  863 acctttatttttaatgcattgtattttacctttcctttaagtt 905  Q
    |||||||||||||||||| || |||||||||||||||| ||||    
T  17987524 acctttatttttaatgcaatgcattttacctttcctttgagtt 17987482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 143; Significance: 1e-74; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 683 - 967
Target Start/End: Complemental strand, 28371324 - 28371036
Alignment:
Q  683 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctt-tgtataaataagagttttccataga-aaaacgggtcgcaaatca 780  Q
    ||||||||||||||||| |||| ||| |||| |||||||||||||||| | |||| ||||||||||  ||||||||||||  |||| |||||||||||||    
T  28371324 tctacatggaaggagtgctgatcgtgagattagtttctttccaagttatt-tcttatgtataaatagtagttttccatagggaaaatgggtcgcaaatca 28371226  T
Q  781 cctatacaaaattctaaaacattcgaagtaccggagcgagagaaaga-gtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgc 879  Q
    |||||| |||||||||||||| |||||||||| | | ||| |||| | || ||||||||||||||||||| |||||||||||  ||||||||||||||||    
T  28371225 cctatataaaattctaaaacactcgaagtaccagtgtgagtgaaaaaagtcataaagaatgtatgtaaagtatttgtcgaacctcctttatttttaatgc 28371126  T
Q  880 attgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaa--cctttttctgtcgaaagacgcca 967  Q
    ||||||||||||  |||||||||||| |||||||||||||||||||| || ||||||||||||||  | |||||||||||||||||||||    
T  28371125 attgtattttactgttcctttaagtttctgcaatttaaacttaatgcatttactttgcttttaaaaccatttttctgtcgaaagacgcca 28371036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 683 - 944
Target Start/End: Complemental strand, 9218367 - 9218105
Alignment:
Q  683 tctacatggaaggagtgttgattgtgggattc-gtttctttccaagttagtatctt-tgtataaataagagttttccataga-aaaacgggtcgcaaatc 779  Q
    ||||||||||||||||||||||  |||||||  | || ||| || |||||| | || ||||||||||   |||||||||||  |||||||||||||||||    
T  9218367 tctacatggaaggagtgttgatcatgggattgtgcttttttgca-gttagtttattatgtataaatagttgttttccatagggaaaacgggtcgcaaatc 9218269  T
Q  780 acctatacaaaattctaaaacattcgaagtaccggagcgagagaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgc 879  Q
    || |||||| |||||||||||| |||||||||||  |||||||||| ||| ||| |||||||||||||| |||||||||||| | |||||||||||||||    
T  9218268 acatatacagaattctaaaacactcgaagtaccgacgcgagagaaa-agtcatacagaatgtatgtaaatgatttgtcgaaccatctttatttttaatgc 9218170  T
Q  880 attgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaa 944  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||  || ||||||||||||||    
T  9218169 attgtattttatctttcctttaagtttctgcaatttaaacttaatgtttttactttgcttttaaa 9218105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 842 - 966
Target Start/End: Complemental strand, 10661095 - 10660970
Alignment:
Q  842 atgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgctttt 941  Q
    |||||||||||||||||||| ||||||||||| |||||||||  ||| ||||||||||||| |||||||||||||||||||||| ||| |||||||||||    
T  10661095 atgtaaaggatttgtcgaaccacctttattttgaatgcattgcgtttcacctttcctttaacttcctgcaatttaaacttaatgtctttactttgctttt 10660996  T
Q  942 -aaacctttttctgtcgaaagacgcc 966  Q
     ||||| ||||||||| |||||||||    
T  10660995 aaaacccttttctgtccaaagacgcc 10660970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 739 - 921
Target Start/End: Original strand, 9286315 - 9286498
Alignment:
Q  739 gtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaag-agtgataaag 836  Q
    |||||||||  ||||||||||||  ||||||||||||||||||| |||| ||| ||||| |||| |||||||||||| ||||||||||  ||| ||| |     
T  9286315 gtataaatagtagttttccatagggaaaacgggtcgcaaatcacatatagaaa-ttctacaacactcgaagtaccggtgcgagagaaaatagttatacaa 9286413  T
Q  837 aatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 921  Q
    |||||||||||||||||||||||||||||||||||||||||||| || | |||| ||||  |||||||| ||||| ||| |||||    
T  9286414 aatgtatgtaaaggatttgtcgaactacctttatttttaatgcaatgcaatttatcttttttttaagtttctgcacttttaactt 9286498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 738 - 883
Target Start/End: Complemental strand, 16600737 - 16600591
Alignment:
Q  738 tgtataaataagagttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaa-agagtgataaa 835  Q
    ||||||||||  |||||||||||| |||||||||| ||||||||| |||| ||| ||||| |||| |||||||||||| ||||||||| ||||| ||| |    
T  16600737 tgtataaatagtagttttccataggaaaaacgggttgcaaatcacttatagaaa-ttctacaacactcgaagtaccggcgcgagagaatagagttataca 16600639  T
Q  836 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattg 883  Q
     |||||| |||||||||||||||||| || ||||||||||||||||||    
T  16600638 taatgtacgtaaaggatttgtcgaaccacatttatttttaatgcattg 16600591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 738 - 880
Target Start/End: Original strand, 23540207 - 23540351
Alignment:
Q  738 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaa-gagtgataaa 835  Q
    ||||||||||  ||||||||||||  ||||||||| |||||||||||||||| |||||||||| | || |||||||||  | ||||||| || | |||||    
T  23540207 tgtataaatagtagttttccatagggaaaacgggttgcaaatcacctatacagaattctaaaatactcaaagtaccggctcaagagaaaagaatcataaa 23540306  T
Q  836 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 880  Q
    ||||||||||||| ||||| |||||| ||||||||||||||||||    
T  23540307 gaatgtatgtaaaagatttttcgaaccacctttatttttaatgca 23540351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 688 - 849
Target Start/End: Complemental strand, 10661911 - 10661748
Alignment:
Q  688 atggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcacctata 786  Q
    ||||||||||||||||| |||||||| ||||||||||| |||  | ||| |||||||||||||||||||||| |  ||||| ||||||||||||||||||    
T  10661911 atggaaggagtgttgatcgtgggattagtttctttcca-gttgttttctatgtataaataagagttttccattgggaaaacaggtcgcaaatcacctata 10661813  T
Q  787 caaaattctaaaacat-tcgaagtaccggagcgagagaaa-gagtgataaagaatgtatgtaaag 849  Q
    || ||||||||||  | || | ||||||| |||| | ||| |||| |||||||||||||||||||    
T  10661812 cagaattctaaaaactctcaatgtaccggtgcgataaaaaagagtcataaagaatgtatgtaaag 10661748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 738 - 814
Target Start/End: Original strand, 24577332 - 24577408
Alignment:
Q  738 tgtataaataagagttttccatagaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccgg 814  Q
    ||||||||||  |||||| ||||| ||||||||| |||||||||||||||| |||||||||||| ||||||||||||    
T  24577332 tgtataaatagtagtttttcataggaaaacgggtggcaaatcacctatacagaattctaaaacaatcgaagtaccgg 24577408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 769 - 910
Target Start/End: Complemental strand, 13110345 - 13110204
Alignment:
Q  769 ggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaa-gagtgataaagaatgtatgtaaaggatttgtcgaactacctt 867  Q
    ||||||||||||| |||| ||| ||||| |||| |||||||||||| | |||||||| |||| ||| | ||| |||||| | ||||||| |||| |||||    
T  13110345 ggtcgcaaatcacttatagaaa-ttctacaacactcgaagtaccggcgagagagaaaagagttatacaaaatatatgtatatgatttgttgaaccacctt 13110247  T
Q  868 tatttttaatgcattgtattttacctttcctttaagttcctgc 910  Q
    ||||||||||||| || | |||| |||| ||||||||| ||||    
T  13110246 tatttttaatgcaatgcaatttatcttttctttaagtttctgc 13110204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 833 - 880
Target Start/End: Original strand, 26136195 - 26136242
Alignment:
Q  833 aaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 880  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||    
T  26136195 aaagaatgtatgtaaaggatttgtcggaccacctttatttttaatgca 26136242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 771 - 910
Target Start/End: Original strand, 18672125 - 18672261
Alignment:
Q  771 tcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaa-gagtgataaagaatgtatgtaaaggatttgtcgaactaccttta 869  Q
    ||||||||||| |||| ||| ||||| |||| ||||||||| || | |||||||| |||| ||| | |||||||||||| ||||||| ||||   |||||    
T  18672125 tcgcaaatcacttatagaaa-ttctacaacactcgaagtactggcgagagagaaaagagttatacaaaatgtatgtaaatgatttgttgaac---cttta 18672220  T
Q  870 tttttaatgcattgtattttacctttcctttaagttcctgc 910  Q
    ||||||||||| |||| |||| |||| ||| ||||| ||||    
T  18672221 tttttaatgcaatgtaatttatcttttcttgaagtttctgc 18672261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 835 - 905
Target Start/End: Original strand, 22713681 - 22713751
Alignment:
Q  835 agaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagtt 905  Q
    ||||| ||||||||| ||||||| ||| |||||||||||||||||| ||||  ||| |||| |||||||||    
T  22713681 agaatatatgtaaagaatttgtcaaaccacctttatttttaatgcaatgtaaattatcttttctttaagtt 22713751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 738 - 905
Target Start/End: Complemental strand, 25095223 - 25095053
Alignment:
Q  738 tgtataaataagagttttccatag--aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaa-gagtgataa 834  Q
    ||||||||||  |||||||||||   |||||| |  |||||||||| |||| ||| ||||||||||  ||||||||||| |||||| ||| |||| |||     
T  25095223 tgtataaatagtagttttccatattaaaaaacagaccgcaaatcacttatagaaa-ttctaaaacacccgaagtaccggcgcgagataaaagagttatac 25095125  T
Q  835 agaatgtatgtaaagg-atttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagtt 905  Q
    |  |||||||||||   ||||||||||| ||||||||| | |||||| || | |||| |||| |||||||||    
T  25095124 atgatgtatgtaaaattatttgtcgaaccacctttattataaatgcaatgcaatttatcttttctttaagtt 25095053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 863 - 905
Target Start/End: Complemental strand, 9006973 - 9006931
Alignment:
Q  863 acctttatttttaatgcattgtattttacctttcctttaagtt 905  Q
    |||||||||||||||||| |  |||||||||||||||||||||    
T  9006973 acctttatttttaatgcaatacattttacctttcctttaagtt 9006931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 136; Significance: 2e-70; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 687 - 962
Target Start/End: Original strand, 24698999 - 24699275
Alignment:
Q  687 catggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcacctat 785  Q
    ||||||||||||||||   ||| |||| |||||||| |  |||| | ||| ||||||||||| ||||||||||||  ||||||||||||||||| |||||    
T  24698999 catggaaggagtgttggacgtgtgattagtttcttttcc-gttattttctatgtataaataatagttttccatagggaaaacgggtcgcaaatcccctat 24699097  T
Q  786 acaaaattctaaaacattcgaagtaccggagcgagagaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgta 885  Q
    ||| |||||||||||| |||||||||||| |||||||||| ||    ||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  24699098 acagaattctaaaacactcgaagtaccggcgcgagagaaa-agaatcaaagaatgtatttaaaggatttgtcgaaccacctttatttttaatgcattgta 24699196  T
Q  886 ttttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgctttt--aaacctttttctgtcgaaaga 962  Q
    ||||||||||||||||||||  |||||||||||||||||||||| ||||||||| |  || ||||||||||||||||||    
T  24699197 ttttacctttcctttaagtttatgcaatttaaacttaatgcctttactttgcttatgaaaccctttttctgtcgaaaga 24699275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 8e-67
Query Start/End: Original strand, 684 - 967
Target Start/End: Complemental strand, 15687148 - 15686861
Alignment:
Q  684 ctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccatagaa-aaacgggtcgcaaatcacc 782  Q
    |||||| ||||||||| |||| |||||||| ||||||||||| |||| | ||| ||||||||||||||||||||||||   ||||| |||||||||||||    
T  15687148 ctacatagaaggagtgatgatcgtgggattagtttctttcca-gttattttctatgtataaataagagttttccatagtggaaacgagtcgcaaatcacc 15687050  T
Q  783 tatacaaaattctaaaac-attcgaagtaccggagcgagagaaa-gagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 880  Q
    |||||  ||||||||||  | |||||||||||  |||||||||| ||||  ||||||||||||| || |||||| | | || ||||||||||||||||||    
T  15687049 tatactgaattctaaaaatactcgaagtaccgacgcgagagaaaagagtcttaaagaatgtatgaaatggatttttaggaccacctttatttttaatgca 15686950  T
Q  881 ttgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaa--cctttttctgtcgaaagacgcca 967  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||  ||||||||| |||||| ||||||    
T  15686949 ttgtattttacctttgctttaagtttctgcaatttaaacttaatgcctttactttgcttttaaaaccctttttctatcgaaacacgcca 15686861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 122; E-Value: 5e-62
Query Start/End: Original strand, 738 - 963
Target Start/End: Complemental strand, 26011067 - 26010836
Alignment:
Q  738 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaa-agagtgataaa 835  Q
    ||||||||||  ||||||||||||  ||||| |||||||||||||||||||  |||||||||||| |||||||||||| ||||||||| ||||| |||||    
T  26011067 tgtataaatagtagttttccatagggaaaacaggtcgcaaatcacctataccgaattctaaaacactcgaagtaccggcgcgagagaatagagtcataaa 26010968  T
Q  836 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaa---tttaaacttaatgccttaac 932  Q
    ||||||||||||| |||||||||||| |||||||||||||| ||||||||||||| |||||||||||||| ||||||    |||||||||||||||| ||    
T  26010967 gaatgtatgtaaatgatttgtcgaaccacctttatttttaaagcattgtattttatctttcctttaagtttctgcaagttattaaacttaatgcctttac 26010868  T
Q  933 tttgctttt-aaacctttttctgtcgaaagac 963  Q
    ||||||||| ||| | ||||||||||||||||    
T  26010867 tttgcttttaaaaaccttttctgtcgaaagac 26010836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 738 - 958
Target Start/End: Original strand, 13428700 - 13428921
Alignment:
Q  738 tgtataaataagagttttccatagaa-aaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaa-gagtgataaa 835  Q
    ||||||||||  ||||||||||||   ||||  ||||||||||||||||| ||  |||||||||| |||||||||||  | |||||||| |||| |||||    
T  13428700 tgtataaatagtagttttccataggggaaacatgtcgcaaatcacctatataa--ttctaaaacactcgaagtaccgacgtgagagaaaagagtaataaa 13428797  T
Q  836 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaacttt 935  Q
    ||||||||||||||||||||| |||| || |||||| |||||||||||||||||| ||||||||||| || |||||||||||||||||||| || |||||    
T  13428798 gaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtattttatctttcctttaaatttctgcaatttaaacttaatgcatttacttt 13428897  T
Q  936 gctttt-aaacctttttctgtcga 958  Q
    |||||| ||||| |||||||||||    
T  13428898 gcttttaaaacccttttctgtcga 13428921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 738 - 944
Target Start/End: Complemental strand, 4769949 - 4769742
Alignment:
Q  738 tgtataaataagagttttccatagaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaa-gagtgataaag 836  Q
    ||||||||||  ||||||||||||  ||| | ||| ||||||| ||||||| |||||||||||| ||||| |||| | || ||||||| |||| ||||||    
T  4769949 tgtataaatagtagttttccatagggaaaagcgtcccaaatcatctatacataattctaaaacactcgaaataccagcgcaagagaaaagagtcataaag 4769850  T
Q  837 aatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttg 936  Q
    ||||||||||| | |||| |||||| |||||||||| |||||||||||||||   ||||||||||||||  || ||||||||||||||||||| ||||||    
T  4769849 aatgtatgtaacgaatttttcgaaccacctttatttctaatgcattgtatttattctttcctttaagtttatgaaatttaaacttaatgcctttactttg 4769750  T
Q  937 cttttaaa 944  Q
    ||||||||    
T  4769749 cttttaaa 4769742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 738 - 967
Target Start/End: Original strand, 4765677 - 4765916
Alignment:
Q  738 tgtataaataagagttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaa-gagtgataaa 835  Q
    ||||||||||  |||||||||||| ||||| ||||||||||||||||||| |  ||||||||||| | || ||||  | |||||||||| |||| |||||    
T  4765677 tgtataaatagtagttttccataggaaaaatgggtcgcaaatcacctatatagtattctaaaacacttgatgtactagcgcgagagaaaagagtcataaa 4765776  T
Q  836 gaat----gtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaa-tttaaacttaatgcctta 930  Q
    ||||    ||||||||| |||||||||||| ||||||| ||||||||||||||| ||||  |||||||||||||  ||||| |||||||||||||||||     
T  4765777 gaattaatgtatgtaaatgatttgtcgaaccacctttacttttaatgcattgtactttatttttcctttaagtttatgcaattttaaacttaatgccttt 4765876  T
Q  931 actttgcttttaaa---cctttttctgtcgaaagacgcca 967  Q
    ||||||||||||||   ||||||  |||||||||||||||    
T  4765877 actttgcttttaaaaacccttttcatgtcgaaagacgcca 4765916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 683 - 880
Target Start/End: Complemental strand, 7148988 - 7148790
Alignment:
Q  683 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccatagaaaaac-gggtcgcaaatcac 781  Q
    |||||||||||||||||||||| |||||||| |||||||||||| ||| |  || ||||||||||  |||||||||||| ||||| ||||| |||||  |    
T  7148988 tctacatggaaggagtgttgatcgtgggattagtttctttccaa-ttatttcctatgtataaatagtagttttccataggaaaaccgggtcacaaattgc 7148890  T
Q  782 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaa-gagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 880  Q
    ||||||| |||||||||| | | |||||||||  |||||||||| |||| ||||||||||||||||||||||||||||||| || |||| ||||||||||    
T  7148889 ctatacagaattctaaaatagttgaagtaccgacgcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacttttacttttaatgca 7148790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 683 - 888
Target Start/End: Original strand, 9033415 - 9033622
Alignment:
Q  683 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctt-tgtataaataagagttttccatagaaaaacgggtcgcaaatcac 781  Q
    |||||||||| ||||||||||| ||| |||| |||||||||||  ||| | |||| ||||||||||| |||||||||||| ||||||||||||| ||| |    
T  9033415 tctacatggagggagtgttgatcgtgtgattagtttctttccac-ttatt-tcttatgtataaataatagttttccataggaaaacgggtcgcatatcgc 9033512  T
Q  782 ctatacaaaattct-aaaacattcgaagtaccggagcgagagaaagag-tgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgc 879  Q
    ||||||| |||| | |||||| |||||||| ||| || |||||||  | | | ||||||||||||||||||||||||| ||| |||||||||||||||||    
T  9033513 ctatacagaattttcaaaacactcgaagtatcggcgcaagagaaaatggtcacaaagaatgtatgtaaaggatttgtcaaaccacctttatttttaatgc 9033612  T
Q  880 a-ttgtattt 888  Q
    | ||||||||    
T  9033613 acttgtattt 9033622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 738 - 964
Target Start/End: Original strand, 4832504 - 4832735
Alignment:
Q  738 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaa-gagtgataaa 835  Q
    ||||||||||  ||||||||||||  |||| || |||||||||||||||||| |||||||||||| |||||| |  || | |||||||| |||| | |||    
T  4832504 tgtataaatagtagttttccatagggaaaatggatcgcaaatcacctatacagaattctaaaacactcgaagcattggtgtgagagaaaagagtcacaaa 4832603  T
Q  836 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaacttt 935  Q
    |||| ||| |||||||| ||  | || |||||||| |||||||||||||||||||  |||||||| ||||  |||||||||||||||||| ||| || ||    
T  4832604 gaatatatttaaaggatctgctggaccacctttatatttaatgcattgtattttaattttcctttgagtttatgcaatttaaacttaatgtctttacctt 4832703  T
Q  936 gcttttaaa---cctttttctgtcgaaagacg 964  Q
    ||||| |||   | ||||||| ||||||||||    
T  4832704 gctttaaaaacccttttttctttcgaaagacg 4832735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 683 - 877
Target Start/End: Original strand, 29614529 - 29614724
Alignment:
Q  683 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 781  Q
    ||||||||||||||||| ||||||||||||| |||||||| ||  ||| |  || |||||||| || ||||||||||||  |||| |||||||||||| |    
T  29614529 tctacatggaaggagtgctgattgtgggattagtttcttttcat-ttatttcctatgtataaa-aatagttttccatagggaaaatgggtcgcaaatcgc 29614626  T
Q  782 ctatacaaaattctaa-aacattcgaagtaccggagcgagagaaa-gagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaat 877  Q
    ||||| | |||||||| |||| |||||||||||   | ||||||| |||| ||||| ||||||||||||||||||||||||| |||||||||||||||    
T  29614627 ctatatataattctaagaacactcgaagtaccgacacaagagaaaagagtcataaataatgtatgtaaaggatttgtcgaaccacctttatttttaat 29614724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 738 - 915
Target Start/End: Complemental strand, 23378668 - 23378488
Alignment:
Q  738 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagag-aaagagtgataaa 835  Q
    ||||||||||  |||||| |||||  |||| | ||| |||||||| ||||||||||||||||| | |||||||| ||| ||||||| ||||||| ||| |    
T  23378668 tgtataaatagtagttttacatagggaaaatgtgtcacaaatcacttatacaaaattctaaaatactcgaagtatcggcgcgagagaaaagagtcataca 23378569  T
Q  836 gaatgtatgtaaaggatttg-tcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaattt 915  Q
     ||||||||||||||||||| | |||| |||||||||||||||||| || | |||| |||||||||||||| || ||||||    
T  23378568 taatgtatgtaaaggatttgtttgaaccacctttatttttaatgcaatgcaatttatctttcctttaagtttctacaattt 23378488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 741 - 880
Target Start/End: Original strand, 16242928 - 16243069
Alignment:
Q  741 ataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaa-gagtgataaagaa 838  Q
    |||||||  ||||||||||||  |||||| |||| ||||  ||| ||||  ||||||||||| ||||||||||   |||||||||| |||| ||||||||    
T  16242928 ataaatagtagttttccatagggaaaacgagtcgtaaatttcctctacaggattctaaaacactcgaagtaccaacgcgagagaaaagagtcataaagaa 16243027  T
Q  839 tgtatgtaaaggatttgtcgaactacctttatttttaatgca 880  Q
    ||||||||||| ||||||||||| || |||||||||||||||    
T  16243028 tgtatgtaaagcatttgtcgaaccacttttatttttaatgca 16243069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 863 - 905
Target Start/End: Complemental strand, 13409876 - 13409834
Alignment:
Q  863 acctttatttttaatgcattgtattttacctttcctttaagtt 905  Q
    |||||||||||||||||| || |||||||||||||||||||||    
T  13409876 acctttatttttaatgcaatgcattttacctttcctttaagtt 13409834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 837 - 911
Target Start/End: Original strand, 8737234 - 8737308
Alignment:
Q  837 aatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgca 911  Q
    |||| ||||||||||||||| |||| ||||||||||| |||||| || | |||| |||| |||||| || |||||    
T  8737234 aatgcatgtaaaggatttgttgaaccacctttattttaaatgcaatgcaatttagcttttctttaactttctgca 8737308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 837 - 911
Target Start/End: Original strand, 9089472 - 9089546
Alignment:
Q  837 aatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgca 911  Q
    |||| ||||||||||||||| |||| ||||||||||| |||||| || | |||| |||| |||||| || |||||    
T  9089472 aatgcatgtaaaggatttgttgaaccacctttattttaaatgcaatgcaatttagcttttctttaactttctgca 9089546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 1e-62; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 741 - 967
Target Start/End: Original strand, 22397545 - 22397775
Alignment:
Q  741 ataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaa-cattcgaagtaccggagcgagagaaag-agtgataaaga 837  Q
    ||||||||||||||||| |||  |||||||||||||||||||||||||| |||||||||| || |||||||||||| ||||||||||  ||| |||||||    
T  22397545 ataaataagagttttccgtagggaaaacgggtcgcaaatcacctatacagaattctaaaaacactcgaagtaccggcgcgagagaaaatagtcataaaga 22397644  T
Q  838 atgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcc-tttaagttcctgcaatttaaacttaatgccttaactttg 936  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    |||||     
T  22397645 atgtatgtaaaggatttgtcgaacaacctttatttttaatgcattgtattttacctttccttttaagtttctgcaatttaaacttaatgc--agactttt 22397742  T
Q  937 cttttaaa--cctttttctgtcgaaagacgcca 967  Q
    ||||||||  | ||||| |||||||||||||||    
T  22397743 cttttaaaaccttttttttgtcgaaagacgcca 22397775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 683 - 880
Target Start/End: Complemental strand, 16177502 - 16177304
Alignment:
Q  683 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccata-gaaaaacgggtcgcaaatcac 781  Q
    ||||||||||||||||| ||||||||||||| |||||||||||  ||| | ||| ||||||||||  ||||||||||| | |||||||||||||||| ||    
T  16177502 tctacatggaaggagtgctgattgtgggattagtttctttccac-ttattttctatgtataaatattagttttccatatggaaaacgggtcgcaaataac 16177404  T
Q  782 ctatacaaaattctaaaacattcgaagtaccggagcgagag-aaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 880  Q
    |||||||||||||||||||| ||||||||||      |||| ||||||| |||||||||||||||||||||||| |||||| || |||||||||||||||    
T  16177403 ctatacaaaattctaaaacactcgaagtaccaacataagagaaaagagtcataaagaatgtatgtaaaggatttttcgaaccacatttatttttaatgca 16177304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 56 - 193
Target Start/End: Original strand, 17365390 - 17365527
Alignment:
Q  56 tgaacaatgtactagccaaatacaaaatggctttaccattttattgggtaagattcccagcattacctagtgcagacttcaccttgtcttttgaacccaa 155  Q
    ||||||| | |||||||| |||||||||||||||| ||||||| |  ||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  17365390 tgaacaacgcactagccagatacaaaatggctttagcattttactacgtaagattcccagcattacctagtgcagacttcactttgtctttcgaacccaa 17365489  T
Q  156 ttacccttcttggttccattttgtttataaatccattc 193  Q
     |||||| |||||||||||||||  |||||| ||||||    
T  17365490 ctaccctccttggttccattttggctataaagccattc 17365527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 763 - 944
Target Start/End: Complemental strand, 17524998 - 17524816
Alignment:
Q  763 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagag-aaagagtgataaagaatgtatgtaaaggatttgtcgaac 861  Q
    ||||| |||||||||||||||||||| |||||||||||| ||||||| | || | ||||| ||||||| ||||||||||||| ||||||| |||||| ||    
T  17524998 aaaacaggtcgcaaatcacctatacataattctaaaacactcgaagtgctggcgtgagagaaaagagtcataaagaatgtatttaaagga-ttgtcggac 17524900  T
Q  862 tacctttatttttaatgcattgtattttacctttcctttaagttcctgcaa-tttaaacttaatgccttaactttgcttttaaa 944  Q
     |||||||||||||||||||| || ||||  ||| ||||||||| || ||| |||||| ||||| |||| |||||| |||||||    
T  17524899 aacctttatttttaatgcattataatttattttttctttaagtttctacaattttaaaattaattcctttactttgtttttaaa 17524816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 685 - 880
Target Start/End: Original strand, 1177150 - 1177349
Alignment:
Q  685 tacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccatagaaaaacgggtcgcaaatcaccta 784  Q
    |||||||| |||||||||||  || |||| |||||||| ||  ||| |  || ||||||||||  |||||| ||||| ||||| || ||||||||| |||    
T  1177150 tacatggagggagtgttgatcatgagattagtttcttttcat-ttatttcctatgtataaatagtagttttgcataggaaaacaggacgcaaatcatcta 1177248  T
Q  785 tacaaaattctaaaacattcgaagtaccggagcgagag-aaagagtgataaaga----atgtatgtaaaggatttgtcgaactacctttatttttaatgc 879  Q
    |||| |||||||||||| |||||||||  | ||||||| ||||||| |||||||    |||||||||||||||||||||||| |||||||||||||||||    
T  1177249 tacagaattctaaaacactcgaagtactagcgcgagagaaaagagtcataaagaatacatgtatgtaaaggatttgtcgaaccacctttatttttaatgc 1177348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 683 - 876
Target Start/End: Complemental strand, 15830220 - 15830026
Alignment:
Q  683 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccata-gaaaaacgggtcgcaaatcac 781  Q
    ||||||||||| ||||| | ||| ||||||| |||||||||||  ||| | ||| ||||||||||| |||||| |||| | ||||||||||||||||| |    
T  15830220 tctacatggaaagagtgctaattatgggattagtttctttccac-ttattttctatgtataaataatagttttgcataaggaaaacgggtcgcaaatcgc 15830122  T
Q  782 ctatacaaaattctaaaacattcgaagtaccggagcgagag-aaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaa 876  Q
    ||||||| |||||||||||| || ||||| | | | ||||| ||||||| ||||| |||||||||||| |||||||||||  || |||||||||||    
T  15830121 ctatacagaattctaaaacactcaaagtatcagtgtgagagaaaagagtcataaataatgtatgtaaaagatttgtcgaatcacttttatttttaa 15830026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 741 - 905
Target Start/End: Original strand, 17947842 - 17948007
Alignment:
Q  741 ataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagag-aaagagtgataaagaa 838  Q
    |||||||  ||||||||||||  |||| |||||  ||||||| |||| ||| ||||| ||||||||||||| ||| || |||| ||||||| ||| | ||    
T  17947842 ataaatattagttttccatagggaaaatgggtcaaaaatcacttatagaaa-ttctacaacattcgaagtaacggcgcaagaggaaagagttatataaaa 17947940  T
Q  839 tgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagtt 905  Q
    ||||||||||||||||||||||| ||||||||||||||| || || | |||| ||||||||||||||    
T  17947941 tgtatgtaaaggatttgtcgaaccacctttatttttaattcaatgcaatttatctttcctttaagtt 17948007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 769 - 921
Target Start/End: Original strand, 14762938 - 14763090
Alignment:
Q  769 ggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaa-gagtgataaagaatgtatgtaaaggatttgtcgaactacctt 867  Q
    ||||||||||||| |||| ||| ||||| | || ||||||||| |   ||||||||| |||| ||| ||||||||||||||||| || |||||| |||||    
T  14762938 ggtcgcaaatcacttatagaaa-ttctacatcactcgaagtactgacacgagagaaaagagttatacagaatgtatgtaaaggagttctcgaaccacctt 14763036  T
Q  868 tatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 921  Q
    ||||||||||||| || | |||| |||| ||||||||| ||||| ||| |||||    
T  14763037 tatttttaatgcaatgcaatttatcttttctttaagtttctgcacttttaactt 14763090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 789 - 921
Target Start/End: Complemental strand, 18713842 - 18713709
Alignment:
Q  789 aaattctaaaacattcgaagtaccggagcgagagaaa-gagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtatt 887  Q
    |||||||| |||| || ||||||||   ||||||||| |||| ||| ||||||||||||||||||||||||||| |||||||||||||| ||| || | |    
T  18713842 aaattctataacactcaaagtaccgtcacgagagaaaagagttatacagaatgtatgtaaaggatttgtcgaaccacctttatttttaaagcaatgcaat 18713743  T
Q  888 ttacctttcctttaagttcctgcaatttaaactt 921  Q
    ||| | || ||||||||| ||||| ||| |||||    
T  18713742 ttatcatttctttaagtttctgcacttttaactt 18713709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 17365558 - 17365599
Alignment:
Q  213 taacttggaccaaatttggtttacacaattacccaaaaactt 254  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  17365558 taacttggaccaagtttggtttacacaattacccaaaaactt 17365599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 683 - 810
Target Start/End: Original strand, 31126082 - 31126209
Alignment:
Q  683 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 781  Q
    ||||||||||||||||| | ||  ||||||| |||||||||||  ||| |  || ||||||||||| |||||||| |||  |||||||||| |||||| |    
T  31126082 tctacatggaaggagtgctaatcttgggattagtttctttccac-ttatttcctatgtataaataatagttttccttagggaaaacgggtctcaaatctc 31126180  T
Q  782 ctatacaaaattctaaaacattcgaagta 810  Q
    |||||   |||||||||||| ||||||||    
T  31126181 ctatatggaattctaaaacactcgaagta 31126209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 837 - 931
Target Start/End: Original strand, 31126249 - 31126351
Alignment:
Q  837 aatgtatgtaaaggatttgtcgaactacctttatttttaatgca-------ttgtattttacctttcctttaagttcctgcaattt-aaacttaatgcct 928  Q
    ||||||||||||||||||| ||||| |||||||||| |||||||       |||||||||  |||| |||| |||| ||||||||| ||||||||||| |    
T  31126249 aatgtatgtaaaggatttgccgaaccacctttatttataatgcacttgcatttgtattttttcttttctttgagtttctgcaatttaaaacttaatgcat 31126348  T
Q  929 taa 931  Q
    |||    
T  31126349 taa 31126351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 863 - 905
Target Start/End: Complemental strand, 25945889 - 25945847
Alignment:
Q  863 acctttatttttaatgcattgtattttacctttcctttaagtt 905  Q
    |||||||||||||||||| || ||||||||| |||||||||||    
T  25945889 acctttatttttaatgcaatgcattttacctctcctttaagtt 25945847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 360 - 437
Target Start/End: Original strand, 17365687 - 17365764
Alignment:
Q  360 tatatgtttccttattttgagatacctcttttattgatcttgcagctgtgccttgacaaacgactcagactagtacac 437  Q
    ||||| |||||||||||||| | || ||||| |||||  | |||| | ||||| ||||||| ||||||||||||||||    
T  17365687 tatatatttccttattttgacacacttctttcattgacttcgcagttatgcctcgacaaacaactcagactagtacac 17365764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 2e-61; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 701 - 951
Target Start/End: Complemental strand, 11361866 - 11361615
Alignment:
Q  701 tgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaa 799  Q
    |||| |||||||| ||||||||||| |  | | ||| |||||||||||||||||||| |||  ||||| ||||| | |||||||||||| ||||||||||    
T  11361866 tgatcgtgggattagtttctttccatgc-attttctatgtataaataagagttttccgtagggaaaacaggtcgtagatcacctatacagaattctaaaa 11361768  T
Q  800 cattcgaagtaccggagcgagagaaa-gagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcct 898  Q
    || ||||  |||||  ||||| |||| |||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |    
T  11361767 cactcgacttaccgacgcgagggaaaagagttacaaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcat 11361668  T
Q  899 ttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaccttttt 951  Q
    |||| || ||||||||||||||||||||||| |||||||||||||| ||||||    
T  11361667 ttaaatttctgcaatttaaacttaatgcctttactttgcttttaaaacttttt 11361615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 7e-58
Query Start/End: Original strand, 683 - 941
Target Start/End: Original strand, 9409083 - 9409346
Alignment:
Q  683 tctacatggaaggagtgttgattgtgggattc---gtttctttccaagttagtatctt-tgtataaataagagttttccatagaa-aaacgggtcgcaaa 777  Q
    |||||||||||| ||||||||| ||||||||    |||| |||||| |||| | || | ||||||||||  ||||||||||||   ||||||||||||||    
T  9409083 tctacatggaagaagtgttgatcgtgggattatttgtttttttcca-gttattttcctatgtataaatagtagttttccataggggaaacgggtcgcaaa 9409181  T
Q  778 tcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaga-gtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaa 876  Q
    |||| |||| | |||||||||||| |||||||||||| || ||||||| | || ||||||||||||||||||||||||||||||| ||||||||||||||    
T  9409182 tcacttatatagaattctaaaacactcgaagtaccggcgcaagagaaaaaagttataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaa 9409281  T
Q  877 tgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgctttt 941  Q
    |||||||||||||| ||||||||||||||  ||||||||||||||||| | || |||||||||||    
T  9409282 tgcattgtattttatctttcctttaagtttatgcaatttaaacttaatacttttactttgctttt 9409346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 740 - 921
Target Start/End: Complemental strand, 16675269 - 16675086
Alignment:
Q  740 tataaataagagttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaa-agagtgataaaga 837  Q
    ||||||||  ||||||||||| |||||||||||| |||||| | |||| | | |||||||||| |||||||||||| ||||||||| ||||| ||| |||    
T  16675269 tataaatagtagttttccatatgaaaaacgggtcacaaatcccttatagata-ttctaaaacactcgaagtaccggtgcgagagaagagagttatacaga 16675171  T
Q  838 atgtatgtaaag-gatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 921  Q
    |||||||||||  |||||||||||| || |||||||| |||||| |  | ||||||||| ||||| ||| ||||| |||||||||    
T  16675170 atgtatgtaaaatgatttgtcgaaccacttttattttaaatgcaatacaatttaccttttctttatgtttctgcattttaaactt 16675086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 823 - 880
Target Start/End: Complemental strand, 5358097 - 5358040
Alignment:
Q  823 aaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 880  Q
    ||||||| ||| | |||||||||||| |||||||||||||||||||||||||||||||    
T  5358097 aaagagtcatacataatgtatgtaaatgatttgtcgaactacctttatttttaatgca 5358040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 863 - 905
Target Start/End: Original strand, 18558473 - 18558515
Alignment:
Q  863 acctttatttttaatgcattgtattttacctttcctttaagtt 905  Q
    |||||||||||||||||| || ||||||| |||||||||||||    
T  18558473 acctttatttttaatgcaatgcattttacatttcctttaagtt 18558515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 7e-58; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 7e-58
Query Start/End: Original strand, 683 - 926
Target Start/End: Complemental strand, 20146420 - 20146169
Alignment:
Q  683 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccata-gaaaaacgggtcgcaaatcac 781  Q
    ||||||| |||||||||||||| |||||| | |||||||||||||||| |  |||||||||||||||||||||||||| | |||| ||||||||||||||    
T  20146420 tctacatagaaggagtgttgatcgtgggactagtttctttccaagttatttgctttgtataaataagagttttccatatggaaaatgggtcgcaaatcac 20146321  T
Q  782 ctatacaaaattctaaaacattcgaagtaccggagcgagag-aaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 880  Q
    |||||||||||||||||||| || ||||||||| ||||||| ||||||| |||||| ||||||||||||||||| | | || | ||||||||||||||||    
T  20146320 ctatacaaaattctaaaacactcaaagtaccggtgcgagagaaaagagtcataaag-atgtatgtaaaggattttttggaccatctttatttttaatgca 20146222  T
Q  881 -------ttgtattttacctttcctttaagttcctgcaatttaaacttaatgc 926  Q
           || |||||| ||||| ||||||||| ||||||||||||||||||||    
T  20146221 cttgcatttttatttttccttttctttaagtttctgcaatttaaacttaatgc 20146169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 738 - 944
Target Start/End: Original strand, 11013817 - 11014026
Alignment:
Q  738 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaa-gagtgataaa 835  Q
    |||||| ||| |||||||||||||  |||| |||| ||||||||||||||||||||| ||||||| ||||| |||| |   |||||||| |||| |||||    
T  11013817 tgtatatataggagttttccataggtaaaatgggttgcaaatcacctatacaaaattttaaaacactcgaaataccagcttgagagaaaagagtcataaa 11013916  T
Q  836 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaa-tttaaacttaatgccttaactt 934  Q
    |||| ||||||||||||||||||| | ||||||||||||||||||||||| ||||  ||||||||||||| | | || ||||||||||||||||| ||||    
T  11013917 gaatatatgtaaaggatttgtcgagccacctttatttttaatgcattgtactttatttttcctttaagtttcaggaattttaaacttaatgcctttactt 11014016  T
Q  935 tgcttttaaa 944  Q
    ||||||||||    
T  11014017 tgcttttaaa 11014026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 738 - 915
Target Start/End: Complemental strand, 33103201 - 33103021
Alignment:
Q  738 tgtataaataagagttttccataga--aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaa-gagtgataa 834  Q
    ||||||||||  ||||||||||||   ||||| |||||||||||||||||||| |||||||||||| |||||||||||  | |||||||| |||| |||     
T  33103201 tgtataaatagtagttttccataggggaaaacaggtcgcaaatcacctatacataattctaaaacactcgaagtaccgacgtgagagaaaagagtcatat 33103102  T
Q  835 agaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaattt 915  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| || | |||| |||||||||||||| |||||||||    
T  33103101 agaatgtatgtaaaggatttgtcgaactacatttatttttaatgcaatgcaatttatctttcctttaagtttctgcaattt 33103021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 750 - 921
Target Start/End: Original strand, 36571655 - 36571826
Alignment:
Q  750 agttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaa-gagtgataaagaatgtatgtaa 847  Q
    |||||||||||| ||||| |||||||||||||| |||| ||| ||||| |||| |||||||||  |  ||||||||| |||| ||| | |||||||||||    
T  36571655 agttttccataggaaaaatgggtcgcaaatcacttatagaaa-ttctacaacactcgaagtactagcacgagagaaaagagttatacataatgtatgtaa 36571753  T
Q  848 aggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 921  Q
    |||||||||||||| |||||||||||||||||| || | || | |||| ||||||||| ||||| ||| |||||    
T  36571754 aggatttgtcgaaccacctttatttttaatgcaatgcaattaatcttt-ctttaagtttctgcagttttaactt 36571826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 752 - 921
Target Start/End: Original strand, 22607834 - 22608003
Alignment:
Q  752 ttttccatagaa-aaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaa-gagtgataaagaatgtatgtaaag 849  Q
    |||||||||||  |||||||||||||||||| |||  ||  ||||| |||| |||||||||||  || ||||||| |||| ||||| |||||||||||||    
T  22607834 ttttccatagaggaaacgggtcgcaaatcacttatggaat-ttctataacaatcgaagtaccgtcgcaagagaaaagagttataaaaaatgtatgtaaag 22607932  T
Q  850 gatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 921  Q
    ||| ||  |||| |||||||||||||||||| |||| |||| ||||||||||| || ||||||||| |||||    
T  22607933 gatctgctgaaccacctttatttttaatgcaatgtagtttatctttcctttaaatt-ctgcaattttaactt 22608003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 738 - 902
Target Start/End: Original strand, 20150422 - 20150588
Alignment:
Q  738 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagag-aaagagtgataaa 835  Q
    ||||||||||   |||||||||||  |||||||||| ||||||||||||||| ||||||| |||| |||||||||||  ||||||| ||| ||| ||| |    
T  20150422 tgtataaatagttgttttccatagggaaaacgggtctcaaatcacctatacataattctacaacactcgaagtaccgacgcgagagaaaaaagtcataca 20150521  T
Q  836 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaa 902  Q
     |||| ||| |||||||||||| ||| ||||||||||||||| || | || |||| |||| ||||||    
T  20150522 aaatgcatgcaaaggatttgtcaaaccacctttatttttaatacaatataatttatcttttctttaa 20150588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 738 - 877
Target Start/End: Original strand, 13202052 - 13202192
Alignment:
Q  738 tgtataaataagagttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaag-agtgataaa 835  Q
    ||||||||||  |||||| ||||| ||||||  |||||||||||| |||| ||| ||||| |||| ||||| |||||| ||||||||||  ||| ||| |    
T  13202052 tgtataaatagtagtttttcataggaaaaacatgtcgcaaatcacttatagaaa-ttctacaacactcgaaataccggcgcgagagaaaatagttataca 13202150  T
Q  836 gaatgtatgtaaaggatttgtcgaactacctttatttttaat 877  Q
     ||||||||||||||||||||||||| |||||||||||||||    
T  13202151 taatgtatgtaaaggatttgtcgaaccacctttatttttaat 13202192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 210 - 265
Target Start/End: Original strand, 20839758 - 20839813
Alignment:
Q  210 gagtaacttggaccaaatttggtttacacaattacccaaaaactttacattatgga 265  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  20839758 gagtaacttggaccaaatttggtttacataattacccaaaaactttacattatgga 20839813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 741 - 905
Target Start/End: Complemental strand, 17615439 - 17615274
Alignment:
Q  741 ataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaa-gagtgataaagaa 838  Q
    |||||||  ||||||||||||  |||||||||| | |||||| |||| ||| ||||| |||| ||||||||| || | |||| ||| |||| | | | ||    
T  17615439 ataaatagtagttttccatagggaaaacgggtcacgaatcacttatagaaa-ttctacaacactcgaagtacaggcgggagaaaaaagagttacacataa 17615341  T
Q  839 tgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagtt 905  Q
    ||||||||||||||||||||||| ||||||||||| |||||| || | || |||||| |||||||||    
T  17615340 tgtatgtaaaggatttgtcgaacaacctttattttgaatgcaatgcagttaaccttttctttaagtt 17615274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 738 - 801
Target Start/End: Original strand, 13232737 - 13232801
Alignment:
Q  738 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaaca 801  Q
    ||||||||||| ||||||||||||  ||||||| ||||||||||||||| || ||||||||||||    
T  13232737 tgtataaataatagttttccatagggaaaacggatcgcaaatcacctatgcataattctaaaaca 13232801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 789 - 878
Target Start/End: Original strand, 22620063 - 22620153
Alignment:
Q  789 aaattctaaaacattcgaagtaccggagcgagagaaag-agtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatg 878  Q
    |||||||| |||| |||||||||| ||||||||||||  ||| ||  | |  ||||||||| |||||||||||| ||||||||||||||||    
T  22620063 aaattctacaacactcgaagtaccagagcgagagaaaatagttattcaaaccgtatgtaaaagatttgtcgaaccacctttatttttaatg 22620153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 849 - 921
Target Start/End: Complemental strand, 20866293 - 20866221
Alignment:
Q  849 ggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 921  Q
    ||||||||||||| ||||||||||||||||||    | |||| |||| ||||||||| ||||||||| |||||    
T  20866293 ggatttgtcgaaccacctttatttttaatgcaacacaatttatcttttctttaagtttctgcaattttaactt 20866221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 98; Significance: 9e-48; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 683 - 926
Target Start/End: Original strand, 5599 - 5851
Alignment:
Q  683 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccata-gaaaaacgggtcgcaaatcac 781  Q
    |||| ||||||||||||||||| |||||||| ||||| |||||||||| |  |||||||||||||||||||||| ||| | ||||||||||| |||||||    
T  5599 tctatatggaaggagtgttgatcgtgggattagtttcattccaagttatttgctttgtataaataagagttttctatagggaaaacgggtcgtaaatcac 5698  T
Q  782 ctatacaaaattctaaaacattcgaagtaccggagcgag-agaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 880  Q
    ||||||| |||||||||||  | |||||||||   |||| | ||||||| |||| |||||||||||||| |||||||| || ||||||||||||||||||    
T  5699 ctatacagaattctaaaacgcttgaagtaccgacacgagaaaaaagagtcataaggaatgtatgtaaagaatttgtcggaccacctttatttttaatgca 5798  T
Q  881 -ttg------tattttacctttcctttaagttcctgcaatttaaacttaatgc 926  Q
     |||      |||||| ||||| |||||||||  |||||||||||||||||||    
T  5799 cttgcattgttatttttccttttctttaagtttttgcaatttaaacttaatgc 5851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 686 - 967
Target Start/End: Complemental strand, 21077 - 20795
Alignment:
Q  686 acatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccatagaaa-aacgggtcgcaaatcaccta 784  Q
    ||||||||||||||||||| |||||||| |||||||||||  ||| |  || ||||||||||  ||| ||||||||  | || |||||||||||||| ||    
T  21077 acatggaaggagtgttgatcgtgggattagtttctttccac-ttatttcctatgtataaatagtagtcttccatagggacaatgggtcgcaaatcacgta 20979  T
Q  785 tacaaaattctaaaacattcgaagtaccggagcgagagaaa-gagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattg 883  Q
    || | |||||||||||| | |||||||     ||||||||| |||| ||||||||||||||||||| |||||| |||| ||||||||||| |||||||||    
T  20978 ta-ataattctaaaacacttgaagtactaacacgagagaaaagagtcataaagaatgtatgtaaagaatttgtggaaccacctttattttaaatgcattg 20880  T
Q  884 tattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgctttt-aaacctttttctgtcgaaagacgcca 967  Q
     |||||  |||||||||||||| ||||| |||||||||||||| || |   | ||||| ||||||||||||||| ||||||||||    
T  20879 cattttttctttcctttaagtttctgcattttaaacttaatgcatttatactacttttaaaacctttttctgtcaaaagacgcca 20795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 66; Significance: 1e-28; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 690 - 849
Target Start/End: Complemental strand, 13151 - 12991
Alignment:
Q  690 ggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcacctataca 788  Q
    ||||||||||||||| |||||||| |||||||| |   ||| | ||| ||||||||||  ||||||||||||  ||||||||||||||||||||||| ||    
T  13151 ggaaggagtgttgatcgtgggattagtttctttactc-ttattttctatgtataaatagtagttttccatagggaaaacgggtcgcaaatcacctatgca 13053  T
Q  789 aaattctaaaacattcgaagtaccggagcgagag-aaagagtgataaagaatgtatgtaaag 849  Q
     |||||||||||| |||||||||  | ||||||| ||||||| |||||||||||||||||||    
T  13052 gaattctaaaacactcgaagtactagcgcgagagaaaagagtcataaagaatgtatgtaaag 12991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 58; Significance: 7e-24; HSPs: 2)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 750 - 921
Target Start/End: Complemental strand, 17392 - 17221
Alignment:
Q  750 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaa-gagtgataaagaatgtatgtaa 847  Q
    ||||||||||||  |||||||||| |||||||| |||| ||| || || |||| |||| ||||||| |||||||||| |||| ||| |||||||||||||    
T  17392 agttttccatagggaaaacgggtcacaaatcacttatagaaa-ttgtacaacactcga-gtaccggcgcgagagaaaagagttatacagaatgtatgtaa 17295  T
Q  848 aggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 921  Q
    |||||||||||||| |||||||||||||| ||| || | |||| | || ||||||||| ||||| ||| |||||    
T  17294 aggatttgtcgaaccacctttatttttaaagcaatgcaatttatcatttctttaagtttctgcacttttaactt 17221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 763 - 921
Target Start/End: Complemental strand, 4703 - 4546
Alignment:
Q  763 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaa-gagtgataaagaatgtatgtaaaggatttgtcgaac 861  Q
    |||||||||| |||||||| |||| ||| ||||| |||| | || ||||||| |||||||||| |||| ||| |||||| || |||| ||||||| ||||    
T  4703 aaaacgggtcacaaatcacttatagaaa-ttctacaacacttga-gtaccggcgcgagagaaaagagttatacagaatgcatttaaaagatttgtagaac 4606  T
Q  862 tacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 921  Q
     |||||||||||||| ||| || | ||||   || ||||||||| ||||| ||| |||||    
T  4605 cacctttatttttaaagcaatgcaatttattatttctttaagtttctgcacttttaactt 4546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 53; Significance: 7e-21; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 738 - 901
Target Start/End: Original strand, 374113 - 374275
Alignment:
Q  738 tgtataaataagagttttccatagaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaa-gagtgataaag 836  Q
    ||||||||||  ||||||||||||  |||  ||||||||||||| |||| ||| | ||| |||| || |||||| || |||||||||| |||| ||| |     
T  374113 tgtataaatagtagttttccatagggaaaacggtcgcaaatcacttatagaaa-tgctacaacactcaaagtacaggcgcgagagaaaagagt-atacaa 374210  T
Q  837 aatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttccttta 901  Q
    ||||||||||||| ||||||||||| |||||||||||||||||| || | |||| ||||||||||    
T  374211 aatgtatgtaaagtatttgtcgaaccacctttatttttaatgcaatgcaatttatctttccttta 374275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 738 - 890
Target Start/End: Complemental strand, 20725 - 20572
Alignment:
Q  738 tgtataaataagagttttccatagaaaa-acgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagag-aaagagtgataaa 835  Q
    ||||||||||| ||||||||||||  || |||||||||||||||| || | ||  |||||||||| |||||||||||| ||||||| ||||||| ||| |    
T  20725 tgtataaataatagttttccataggcaagacgggtcgcaaatcacttacagaac-ttctaaaacactcgaagtaccggcgcgagagaaaagagttataca 20627  T
Q  836 gaatgtatgt-aaaggatttgtcgaactacctttatttttaatgcattgtatttta 890  Q
     ||||||||| |||  ||||||| ||| ||||||| |||||||||| |||| ||||    
T  20626 taatgtatgtgaaataatttgtcaaaccaccttta-ttttaatgcaatgtaattta 20572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 193
Target Start/End: Original strand, 12426 - 12511
Alignment:
Q  108 attcccagcattacctagtgcagacttcaccttgtcttttgaacccaattacccttcttggttccattttgtttataaatccattc 193  Q
    |||||||||||| ||||||||||||||||| |||||||| ||||| |  || ||| ||||||| |||||||  |||||||||||||    
T  12426 attcccagcattgcctagtgcagacttcactttgtctttcgaaccaagctatcctccttggtttcattttggctataaatccattc 12511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1102 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold1102
Description:

Target: scaffold1102; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 738 - 873
Target Start/End: Original strand, 859 - 996
Alignment:
Q  738 tgtataaataagagttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagaga-aagagtgataaa 835  Q
    ||||||||||  ||||||||||| | ||||||||| ||||||||| |||| ||| ||| |||||| |||||||||||| |||||| | |||||| ||| |    
T  859 tgtataaatagtagttttccatacggaaaacgggttgcaaatcacttatagaaa-ttccaaaacactcgaagtaccggcgcgagaaagaagagttataca 957  T
Q  836 gaatgtatgt-aaaggatttgtcgaactacctttatttt 873  Q
     ||||||||| ||| ||||||| |||| |||||||||||    
T  958 taatgtatgtaaaatgatttgttgaacaacctttatttt 996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0795 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0795
Description:

Target: scaffold0795; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 684 - 730
Target Start/End: Original strand, 5989 - 6035
Alignment:
Q  684 ctacatggaaggagtgttgattgtgggattcgtttctttccaagtta 730  Q
    |||||||||| ||||| |||| |||||||| ||||||||||||||||    
T  5989 ctacatggaacgagtgctgatcgtgggattagtttctttccaagtta 6035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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