View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3388R-Insertion-3 (Length: 900)
Name: NF3388R-Insertion-3
Description: NF3388R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3388R-Insertion-3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 754; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 754; E-Value: 0
Query Start/End: Original strand, 9 - 893
Target Start/End: Complemental strand, 46631849 - 46630967
Alignment:
| Q |
9 |
ctttccatataattgtaatatacatttttatcaaagaatacacatgagacatattcagcttatatttctctttgttgcccnnnnnnncaatataatgatt |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
46631849 |
ctttccatataattgtaatatacatttttatcaaagaatacacatgagacatattcaacttatatttctctttgttgccctttttctcaatataattatt |
46631750 |
T |
|
| Q |
109 |
caaatttttaccaaccttcatagctaattcattgagtttgaactttaagttttttatccaaacatgacatatatataatgataaaataagaatggatgga |
208 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46631749 |
ccaatttttaccaaccttcattgctaattcattgagtttgaactttaagttgtttatccaaacatgacatatatataatgataaaataagaatggatgga |
46631650 |
T |
|
| Q |
209 |
aattattatctcctcaatgtctcgaatgattactttggttatttgatgtgaattttttctgcttttctaactctagatggagtagatacgatttcattac |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
46631649 |
aattattatctcctcaatgtctcgaatgattactttggttatttgatgtgaattttttctgcttttctaactctagatggagtagatgcgatttcattac |
46631550 |
T |
|
| Q |
309 |
aaggaacatgaagaggagacttaccctttaatgtcgggttacaatgattctaccaattatttcattaatagctataagatatcaaaccatattgcaatgg |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46631549 |
aaggaacatgaagaggagacttaccctttaatgtcgggttacaatgattctaccaattatttcattaatagctataagatatcaaaccatattgcaatgg |
46631450 |
T |
|
| Q |
409 |
ttccatccatcatggatatcttctatcataagctacactattgaagttcactcaccctgtgatgttcaatatccatttaacaaaagatagatgttccggt |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46631449 |
ttccatccatcatggatatcttctatcataagctacactattgaagttcactcaccgtgtgatgttcaatatccatttaacaaaagatagatgttccggt |
46631350 |
T |
|
| Q |
509 |
accagtcaaaatataattcaaccaatattgtataaataaatggaaaaccaacacattacaaaatttccaacattgatccacttggacaacattttgattt |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46631349 |
accagtcaaaatataattcaaccaatattgtataaataaatggaaaacaaacacattgcaaaatttccaacattgatccacttggacaacattttgattt |
46631250 |
T |
|
| Q |
609 |
attcaataaaatnnnnnnntaaccagagataaggaaattttggaaatcaaaacaaaccaannnnnnnngtacagtatgtctattcatttggcagctttag |
708 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
46631249 |
attcaataaaataaaaaaataaccagagataaggaaattttggaaatcaaaacaaaccaattttttttgtacagtatgtctattcatttggcagctttag |
46631150 |
T |
|
| Q |
709 |
aacacaatttgcaaggaaggcaagaggagcatcgacgatacattcaaaaccaatttgtttacaacagtcagaaactccatgatgacagatagcaggtagc |
808 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46631149 |
aacacaatttgcaagtaaggcaagaggagcat---cgatacattcaaaaccaatttgtttacaacagtcagaaactccatgatgacagatagcaggtagc |
46631053 |
T |
|
| Q |
809 |
ttaaaaaattacaacaattgacctctactc-ttaacttaaccaagtaacttgcaaatatgtagctaccattaccacctccattcaa |
893 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
46631052 |
ttaaaaaattacaacaattgacctctactctttaacttaaccaagtaacttgcaaatatgtagctacctttaccacctccattcaa |
46630967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 699 - 872
Target Start/End: Original strand, 46172622 - 46172792
Alignment:
| Q |
699 |
gcagctttagaacacaatttgcaaggaaggcaagaggagcatcgacgatacattcaaaaccaatttgtttacaacagtcagaaactccatgatgacagat |
798 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| ||| ||||||| | ||||||||| ||||||||||| ||| || | | || ||||||||||||||| |
|
|
| T |
46172622 |
gcagccttagaacacaatttgcaagtcaggcaggagaagcatcggc---acattcaaagccaatttgtttccaaaag-ctggaattccatgatgacagat |
46172717 |
T |
|
| Q |
799 |
a-gcaggtagcttaaaaaattacaacaattgacctctactc-ttaacttaaccaagtaacttgcaaatatgtagct |
872 |
Q |
| |
|
| | || ||||| |||||| || || ||||| ||||| || ||||||||||||||| ||||||||||| ||||| |
|
|
| T |
46172718 |
aggtagaaagctt-aaaaataaccactattgatctctattctttaacttaaccaagtggcttgcaaatatttagct |
46172792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 524 - 608
Target Start/End: Complemental strand, 46639558 - 46639471
Alignment:
| Q |
524 |
attcaaccaatattgtataaataaatggaaaaccaacacatta---caaaatttccaacattgatccacttggacaacattttgattt |
608 |
Q |
| |
|
|||||| |||| |||||||||| ||||||| |||||||||| | ||||||||| |||||| ||||||||||| |||||||||||| |
|
|
| T |
46639558 |
attcaatcaatgttgtataaatgaatggaagaccaacacataaaaacaaaatttctaacattcttccacttggacgacattttgattt |
46639471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 7e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 195 - 580
Target Start/End: Original strand, 15767278 - 15767683
Alignment:
| Q |
195 |
taagaatggatggaaattattatctcctcaatgtctcgaatgattactttggttatttgatgtgaattttttctg---cttttctaactcta-gatggag |
290 |
Q |
| |
|
|||||||| |||||||||| |||||| |||||||| |||||||| |||||||||||||||||||||||||||| | |||||||||| ||| ||||||| |
|
|
| T |
15767278 |
taagaatgtatggaaattagtatctcttcaatgtcccgaatgat-actttggttatttgatgtgaattttttccggttcttttctaaccctaagatggag |
15767376 |
T |
|
| Q |
291 |
tagatacgatttcattacaaggaacatgaagaggagacttaccctttaatgtcgggttacaatgattctaccaattatttcattaatagctataagatat |
390 |
Q |
| |
|
|||| | |||||| |||| |||| ||| |||||||||||||| |||||| | ||||||| |||||||| ||||| ||| | || ||||||||||||| |
|
|
| T |
15767377 |
tagaagcaatttcaa-acaaagaacgtgataaggagacttaccctataatgttgagttacaacgattctacaaattaattcgtcaaaagctataagatat |
15767475 |
T |
|
| Q |
391 |
caaaccatatt----------------gcaatggttccatccatcatggatatcttctat--cataagctacactattgaagttcactcaccctgtgatg |
472 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |||||||| |||| ||||| ||||| ||| ||||| | ||| ||| |
|
|
| T |
15767476 |
caaaccatattttaccatgaaaaagttgcaatggttccatccatcatggatctcttctatatcatatgctacgctatttaagcacactcccggtgtaatg |
15767575 |
T |
|
| Q |
473 |
ttcaatatccatttaacaaaagatagatgttccggtaccagtcaaaatataattcaaccaatattgtataaataaatggaaaaccaacacattacaaaat |
572 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||| |||||||||||| |||||| || |||||||||| || ||||||||||||||| |||||| |
|
|
| T |
15767576 |
ttcaatatccatttaacaaaagatagatattttggtacccgtcaaaatataactcaacctatgttgtataaatgaacggaaaaccaacacataacaaaac |
15767675 |
T |
|
| Q |
573 |
ttccaaca |
580 |
Q |
| |
|
|||||||| |
|
|
| T |
15767676 |
ttccaaca |
15767683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 628 - 873
Target Start/End: Original strand, 15767700 - 15767944
Alignment:
| Q |
628 |
taaccagagataaggaaattttggaaatcaaaacaaaccaannnnnnnngtacagtatgtctattcatttggcagctttagaacacaatttgcaaggaag |
727 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||| ||||||| ||||||||||| ||| |
|
|
| T |
15767700 |
taaccagagaaaaggaaattttggaaatcaaaataaaccaaatttttttgtacagtatgtctagtcatttggcagccttagaactcaatttgcaagtaag |
15767799 |
T |
|
| Q |
728 |
gcaagaggagcatcgacgatacattcaaaaccaatttgtttacaacagtcagaaactccatgatgacagata-gcaggtagcttaaaaaattacaacaat |
826 |
Q |
| |
|
||||||| ||||| | ||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||| ||||||||||||| || || |
|
|
| T |
15767800 |
gcaagagaagcattaa---tacattcaaaaccaatttgattacaaaagtcagaaactccatgatgacagataggcaggtaacttaaaaaattaccactat |
15767896 |
T |
|
| Q |
827 |
tgacctctactc-ttaacttaaccaagtaacttgcaaatatgtagcta |
873 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||| ||| || |||||| |
|
|
| T |
15767897 |
tgacctctactctttaacttaaccaagtagcttgaaaacatttagcta |
15767944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 320 - 399
Target Start/End: Complemental strand, 39905987 - 39905908
Alignment:
| Q |
320 |
agaggagacttaccctttaatgtcgggttacaatgattctaccaattatttcattaatagctataagatatcaaaccata |
399 |
Q |
| |
|
||||| ||| |||||||| |||| ||||||||||| ||||||||||| |||||| |||||| ||||| |||||||||||| |
|
|
| T |
39905987 |
agaggggacctaccctttcatgtagggttacaatggttctaccaattctttcatgaatagccataaggtatcaaaccata |
39905908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 320 - 399
Target Start/End: Original strand, 25019832 - 25019911
Alignment:
| Q |
320 |
agaggagacttaccctttaatgtcgggttacaatgattctaccaattatttcattaatagctataagatatcaaaccata |
399 |
Q |
| |
|
||||| ||| |||||||| |||| ||||||||||| ||||||||||| |||||| ||||| ||||| |||||||||||| |
|
|
| T |
25019832 |
agaggggacctaccctttcatgtagggttacaatggttctaccaattctttcatgaatagtcataaggtatcaaaccata |
25019911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 747 - 890
Target Start/End: Original strand, 18373693 - 18373841
Alignment:
| Q |
747 |
tacattcaaaaccaatttgtttacaacagtcagaaactccatgatga---cagatag-caggtagcttaaaaaattacaacaattgacctctactctt-a |
841 |
Q |
| |
|
||||||| |||||| ||||||| ||| |||| |||||||||||||| ||||||| || ||| ||||||| | | ||| |||||||||||||||| | |
|
|
| T |
18373693 |
tacattctaaaccattttgtttccaaaggtcaaaaactccatgatgatgacagataggcatgtatcttaaaagaaaataactattgacctctactcttta |
18373792 |
T |
|
| Q |
842 |
acttaaccaagtaacttgcaaatatgtagctaccattaccacctccatt |
890 |
Q |
| |
|
|||||||||| | ||||||||||| |||||| || ||||| ||||||| |
|
|
| T |
18373793 |
acttaaccaattggcttgcaaatatctagctaacactaccatctccatt |
18373841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 320 - 400
Target Start/End: Original strand, 40887443 - 40887523
Alignment:
| Q |
320 |
agaggagacttaccctttaatgtcgggttacaatgattctaccaattatttcattaatagctataagatatcaaaccatat |
400 |
Q |
| |
|
||||||||| |||| ||| |||| ||||||||| | ||||||||||| |||||| ||||| ||||| ||||||||||||| |
|
|
| T |
40887443 |
agaggagacctaccttttcatgtagggttacaacggttctaccaattctttcatgaatagtcataaggtatcaaaccatat |
40887523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 320 - 395
Target Start/End: Original strand, 22382053 - 22382128
Alignment:
| Q |
320 |
agaggagacttaccctttaatgtcgggttacaatgattctaccaattatttcattaatagctataagatatcaaac |
395 |
Q |
| |
|
||||| ||| |||||||| |||| ||||||||||| ||||||||||| |||||| ||||| ||||| |||||||| |
|
|
| T |
22382053 |
agaggggacctaccctttcatgtagggttacaatggttctaccaattctttcatgaatagtcataaggtatcaaac |
22382128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 320 - 399
Target Start/End: Complemental strand, 42257066 - 42256987
Alignment:
| Q |
320 |
agaggagacttaccctttaatgtcgggttacaatgattctaccaattatttcattaatagctataagatatcaaaccata |
399 |
Q |
| |
|
||||| ||| |||||||| |||| ||||||||||| |||| ||||| |||||| ||||| |||||| |||||||||||| |
|
|
| T |
42257066 |
agaggggacctaccctttcatgtagggttacaatggctctatcaattctttcatgaatagttataaggtatcaaaccata |
42256987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 320 - 379
Target Start/End: Original strand, 17481538 - 17481597
Alignment:
| Q |
320 |
agaggagacttaccctttaatgtcgggttacaatgattctaccaattatttcattaatag |
379 |
Q |
| |
|
||||| ||| |||||||| |||| ||||||||||| ||||||||||| |||||| ||||| |
|
|
| T |
17481538 |
agaggggacctaccctttcatgtagggttacaatggttctaccaattctttcatgaatag |
17481597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University