View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3388R-Insertion-4 (Length: 865)
Name: NF3388R-Insertion-4
Description: NF3388R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3388R-Insertion-4 |
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| [»] chr1 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 764; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 764; E-Value: 0
Query Start/End: Original strand, 9 - 865
Target Start/End: Original strand, 40749932 - 40750780
Alignment:
| Q |
9 |
tttactttagtttcttctagttctacttctactaactactatatgtaactgaatttaatcaccttttcaggttttggctcaggatttttagctcaatatt |
108 |
Q |
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| T |
40749932 |
tttactttagtttcttctagttctact------aactactatatgtaactgaatttaatcaccttttcaggttttggctcaggatttttagctcaatatt |
40750025 |
T |
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| Q |
109 |
gcaatgatgaatgttttagtttagtttgaagtcaccaaccatttgagttttgtgtnnnnnnnnnnntgggtttatctttttatgtcagattcagacatct |
208 |
Q |
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| T |
40750026 |
gcaatgatgaatgttttagtttagtttgaagtcaccaaccaattgagttttgtgtgaaaaaaaa--tgggtttatctttttatgtcagatttagacatct |
40750123 |
T |
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| Q |
209 |
cttacctgttcttgtgtgtcttgttactatacttgtttttcaattgtattggaaaacattttctctctttgatttgtctagtagattcattggaaacaat |
308 |
Q |
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| T |
40750124 |
cttacctgttcttgtgtgtcttgttactatacttgtttttcaatcgtattggaaaacattttctctcttggatttgtctagtagattcattggaaacaat |
40750223 |
T |
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| Q |
309 |
gttactttacaatctaattattcatttcaatatgaagtggaaaatcatgaaaaagaaattcacaatttcaatcaaaaaatactgcttgatgattccacac |
408 |
Q |
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| T |
40750224 |
gttactttacaatctaattattcatttcaatatgaagtggaaaatcatgaaaaagaaattcacaatttcaatcaaaaaatactgcttgatgattccacac |
40750323 |
T |
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| Q |
409 |
agaaggttagaaaatttgatgaaaaacacaatattcaacaccagagaaaagggtttccttcaaagggaacaaaaggtctgagtgcagattggagcattta |
508 |
Q |
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| T |
40750324 |
agaaggttagagaatttgatgaaaaacacaatattcaacaccagagaaaagggtttccttcaaagggaacaaaaggtctgaatgcagattggagcattta |
40750423 |
T |
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| Q |
509 |
tcatgataatgtaaaaaagtcttcaaatggaagtggaatacaaagtatggaaattgaccctcaaaataaggaaaaaccttagttactgaaaacttctttg |
608 |
Q |
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| T |
40750424 |
tcatgataatgtaaaaaagtcttcaaatggaagtggaatacaaagtatggaaattgaccctcaaaataaggaaaaacctcagttactgaaaacttctttg |
40750523 |
T |
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| Q |
609 |
ttgggttcttcgatcacgatgcagccaacttcattaactcagctgtactctcaattgattcaaagttttaattcttcttctagggtatgaactatgaagt |
708 |
Q |
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| T |
40750524 |
ttgggttcttcgatcacgatgcagccaacttcattaactcggctgtactctcaattgattcaaagttttaattcttcttctagggtatgaactatgaagt |
40750623 |
T |
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| Q |
709 |
tcagtttttgttgttctaacgtacgattgaatcattgttgaatatgtatgtacttctaattttctcattttatgtattgatgacagaagccaaagtcgtc |
808 |
Q |
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| T |
40750624 |
tcagtttttgttgttctaacgtacgattgaatcattgttgaatatgtatgtacttctaattttctcattttatgtattgatgacagaagccaaagtcgtc |
40750723 |
T |
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| Q |
809 |
ttcgcaacgtgaccgtgaactcttagctgcaaaaatagagattgaaaatgcaaatgt |
865 |
Q |
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| T |
40750724 |
ttcgcaacgtgaccgtgaactcttagctgcaaaaatagagattgaaaatgcaaatgt |
40750780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 6e-55; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 175 - 446
Target Start/End: Complemental strand, 5255514 - 5255247
Alignment:
| Q |
175 |
tgggtttatctttttatgtcagattcagacatctcttacctgttcttgtgtgtcttgttactatacttgtttttcaattgtattggaaaacattttctct |
274 |
Q |
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| T |
5255514 |
tgggtatatctttttatatcaaatttagacatctcttacttgttcttgtgtttgttgctactgtacttgttttccaatcttactggaaaatgttttctct |
5255415 |
T |
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| Q |
275 |
ctttgatttgtctagtagattcattggaaacaatgttactttacaatctaattattcatttcaatatgaagtggaaaatcatgaaaaagaaattcacaat |
374 |
Q |
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| T |
5255414 |
cttggatttgtctagtagatttattggaaacaatgtta-ttttcagtctggtaattcactacaatatgaagtggaaaatcatgaaaaagaaattcacact |
5255316 |
T |
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| Q |
375 |
ttcaatcaaaaaatactgcttgatgattccacacagaaggttagaaaatttgatgaaaaacacaatattcaa |
446 |
Q |
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| T |
5255315 |
ttcaataaaaaaata---ctagatgattctgctcaaacagttagagaatttgatgaaaatcacaatattcaa |
5255247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 5255596 - 5255529
Alignment:
| Q |
47 |
ctatatgtaactgaatttaatcaccttttc--aggttttggctcaggatttttagctcaatattgcaa |
112 |
Q |
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| T |
5255596 |
ctatatgtaacttaatttactcacctttttttaggttttggctcatgatttttaacacaatattgcaa |
5255529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 181 - 311
Target Start/End: Complemental strand, 54434565 - 54434435
Alignment:
| Q |
181 |
tatctttttatgtcagattcagacatctcttacctgttcttgtgtgtcttgttactatacttgtttttcaattgtattggaaaacattttctctctttga |
280 |
Q |
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| T |
54434565 |
tatctttttatatcagatttagacatctctaacttgttcttgtgtttgttgctactgtatttgttttccaatcttactggaaaacattttctctcttgga |
54434466 |
T |
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| Q |
281 |
tttgtctagtagattcattggaaacaatgtt |
311 |
Q |
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| T |
54434465 |
tttgtctagtagatttattggaaacaatgtt |
54434435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 815 - 865
Target Start/End: Complemental strand, 33002887 - 33002837
Alignment:
| Q |
815 |
acgtgaccgtgaactcttagctgcaaaaatagagattgaaaatgcaaatgt |
865 |
Q |
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| T |
33002887 |
acgtgatcgtgaactcttatctgcataactagagattaaaaatgcaaatgt |
33002837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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