View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3388R-Insertion-5 (Length: 855)

Name: NF3388R-Insertion-5
Description: NF3388R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3388R-Insertion-5
NF3388R-Insertion-5
[»] chr1 (5 HSPs)
chr1 (254-755)||(1390281-1390756)
chr1 (91-186)||(1390128-1390223)
chr1 (366-462)||(21859717-21859813)
chr1 (366-461)||(22916284-22916379)
chr1 (9-50)||(1390090-1390131)
[»] chr6 (3 HSPs)
chr6 (366-529)||(33596362-33596524)
chr6 (366-462)||(14958902-14958998)
chr6 (365-463)||(8877825-8877922)
[»] chr7 (1 HSPs)
chr7 (366-462)||(48629425-48629521)
[»] scaffold0186 (1 HSPs)
scaffold0186 (365-463)||(2723-2821)
[»] chr4 (3 HSPs)
chr4 (375-461)||(4103226-4103312)
chr4 (635-699)||(52477314-52477378)
chr4 (625-687)||(2302234-2302296)
[»] chr3 (2 HSPs)
chr3 (365-461)||(27437912-27438010)
chr3 (365-463)||(9775128-9775225)
[»] chr2 (2 HSPs)
chr2 (366-445)||(27513752-27513831)
chr2 (13-50)||(4747703-4747740)
[»] chr8 (2 HSPs)
chr8 (366-445)||(15327849-15327928)
chr8 (366-445)||(15508218-15508297)
[»] scaffold0131 (1 HSPs)
scaffold0131 (388-457)||(10296-10365)
[»] scaffold0003 (1 HSPs)
scaffold0003 (369-457)||(111003-111091)


Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 254 - 755
Target Start/End: Original strand, 1390281 - 1390756
Alignment:
Q  254 gtaaatatgcatttagagagaccaaatgcaatacctttaccaaaaccaaactcaaagggtgcaactgagaaggggcagccttcagatgattcaacacctt 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1390281 gtaaatatgcatttagagagaccaaatgcaatacctttaccaaaaccaaactcaaagggtgcaactgagaaggggcagccttcagatgattcaacacctt 1390380  T
Q  354 tatctcaaaactcactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaacggttgttg 453  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||                   
T  1390381 tatctcaaaactcactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaacttataactgcctcaaaatgcacat--------------- 1390465  T
Q  454 cgactgtttggagcaattgtcgcaacttttctttgttaaatgaattaaaaggcgcgttccaatttcatttacgctctctacccaaaatttcatttccccg 553  Q
           ||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  1390466 -------ttggagcaactgtcgcagcttttctttgttaaatgaattaaaaggcgcgttgcaatttcatttacgctctctatccaaaatttcatttccccg 1390558  T
Q  554 ctttcttactttcccccaaaaaccccccaaatctcaaactcaaacttcacaaactcacccaccacactccatcctcactcgttcctcttcctcgttatgc 653  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1390559 ctttcttactttcccccaaaa-ccccccaaatctcaaactcaaacttcacaaactcacccaccacactccatcctcactcgttcctcttcctcgttatgc 1390657  T
Q  654 cttcacacacactcgctctcacactcccaacctaacctacacactcttcttgattcagattcttctcactcccaaaccctaacctgcgataatctctgaa 753  Q
    ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1390658 cttcacacacactcgctctcacactcccaacctaacctacacac---tcttgattcagattcttctcactcccaaaccctaacctgcgataatctctgaa 1390754  T

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Target: chr1; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 91 - 186
Target Start/End: Original strand, 1390128 - 1390223
Alignment:
Q  91 cagctgacttctctatgttcaaatttacgaacagtttatcaaagtgtctatcttctgtagagttatcacaaaatgaagatgaagaagtactagagg 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1390128 cagctgacttctctatgttcaaatttacgaacagtttatcaaagtgtctatcttctgtagagttatcacaaaatgaagatgaagaagtactagagg 1390223  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 366 - 462
Target Start/End: Complemental strand, 21859813 - 21859717
Alignment:
Q  366 cactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaacggttgttgcgactgttt 462  Q
    |||||||||||||||||||  |||||||||||||||||||| ||||| |||| || ||||||||||||||  |||||||| ||||||||| ||||||    
T  21859813 cactacaagaaaaactgcattttgcgacacttcatctgcgaaccttaacttacaactgcctcaaaatgcatttttgcaacagttgttgcggctgttt 21859717  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 366 - 461
Target Start/End: Original strand, 22916284 - 22916379
Alignment:
Q  366 cactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaacggttgttgcgactgtt 461  Q
    ||||||||||||| |  ||| ||||||||| ||||| ||||||| |||||||||| || |||||| ||||  |||| |||||||||||||||||||    
T  22916284 cactacaagaaaatcatcaatttgcgacacctcatcagcgacccctaccttataactgtctcaaagtgcatttttgaaacggttgttgcgactgtt 22916379  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 1390090 - 1390131
Alignment:
Q  9 atatacaatgcaatctacattatatagttattctaatacagc 50  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  1390090 atatacaatgcaatctacattatatagttattctaatacagc 1390131  T

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Target: chr6 (Bit Score: 96; Significance: 1e-46; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 366 - 529
Target Start/End: Complemental strand, 33596524 - 33596362
Alignment:
Q  366 cactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaacggttgttgcgactgtttgga 465  Q
    ||||||||||||| | |||||||| ||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||| |||||||||     
T  33596524 cactacaagaaaatcagcaaattgtgacacttcatctgcgacccctaccttataactgcctcaaaatgaacatttgcaacggttgttgcaactgtttggg 33596425  T
Q  466 gcaattgtcgcaacttttctttgttaaatgaattaaaaggcgcgttccaatttcatttacgctc 529  Q
     ||| |||||||| ||||||||||| ||||| ||||||||||| ||  ||||||||||||||||    
T  33596424 tcaactgtcgcaagttttctttgtt-aatgacttaaaaggcgctttgtaatttcatttacgctc 33596362  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 366 - 462
Target Start/End: Original strand, 14958902 - 14958998
Alignment:
Q  366 cactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaacggttgttgcgactgttt 462  Q
    |||||||||||||||||||  |||||||||||||||||||||||||| |||| || ||||||||||||||  |||||||||||||||||| ||||||    
T  14958902 cactacaagaaaaactgcattttgcgacacttcatctgcgacccttaacttacaactgcctcaaaatgcatttttgcaacggttgttgcggctgttt 14958998  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 365 - 463
Target Start/End: Original strand, 8877825 - 8877922
Alignment:
Q  365 tcactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaacggttgttgcgactgtttg 463  Q
    ||||||||||||||   | |||||||||||||||||||||||||| | ||||  || |||||| |||||||  |||||||| ||||||||| |||||||    
T  8877825 tcactacaagaaaataaggaaattgcgacacttcatctgcgacccatgccttgcaactgcctc-aaatgcatttttgcaacagttgttgcggctgtttg 8877922  T

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Target: chr7 (Bit Score: 61; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 366 - 462
Target Start/End: Original strand, 48629425 - 48629521
Alignment:
Q  366 cactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaacggttgttgcgactgttt 462  Q
    |||||||||||||||||||  |||||||||||||||||||||||||| |||| || ||||||||||||||  |||||||| ||||||||| ||||||    
T  48629425 cactacaagaaaaactgcattttgcgacacttcatctgcgacccttaacttacaactgcctcaaaatgcatttttgcaacagttgttgcggctgttt 48629521  T

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Target: scaffold0186 (Bit Score: 59; Significance: 2e-24; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 365 - 463
Target Start/End: Complemental strand, 2821 - 2723
Alignment:
Q  365 tcactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaacggttgttgcgactgtttg 463  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||| |||| ||  |||||||||||||  |||||||| ||||||||| |||||||    
T  2821 tcactacaagaaaaactgcattttgcgacacttcatctgcgacccttaacttacaaccgcctcaaaatgcatttttgcaacagttgttgcggctgtttg 2723  T

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Target: chr4 (Bit Score: 59; Significance: 2e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 375 - 461
Target Start/End: Original strand, 4103226 - 4103312
Alignment:
Q  375 aaaaactgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaacggttgttgcgactgtt 461  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||  |||||||| ||||||||| |||||    
T  4103226 aaaaactgcaaattgcgacacttcatctgcgacccttaccttacaactgcctcaaagtgcatttttgcaacagttgttgcggctgtt 4103312  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 635 - 699
Target Start/End: Complemental strand, 52477378 - 52477314
Alignment:
Q  635 ttcctcttcctcgttatgccttcacacacactcgctctcacactcccaacctaacctacacactc 699  Q
    ||||| |||||||||||| |||||||| | ||||||||||||||||||||||| |||||||||||    
T  52477378 ttccttttcctcgttatggcttcacacgctctcgctctcacactcccaacctagcctacacactc 52477314  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 625 - 687
Target Start/End: Complemental strand, 2302296 - 2302234
Alignment:
Q  625 tcctcactcgttcctcttcctcgttatgccttcacacacactcgctctcacactcccaaccta 687  Q
    ||||||||| ||| |||||||| |||||||||||  |||| ||||||||||||||||||||||    
T  2302296 tcctcactccttcttcttcctcattatgccttcaatcacagtcgctctcacactcccaaccta 2302234  T

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Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 365 - 461
Target Start/End: Original strand, 27437912 - 27438010
Alignment:
Q  365 tcactacaagaaaaac--tgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaacggttgttgcgactgtt 461  Q
    ||||||||||||||||  |||||||||||||||||||||||||| |||||||||  || ||||||||| ||||  |||||||| ||||||||| |||||    
T  27437912 tcactacaagaaaaacactgcaaattgcgacacttcatctgcgatccttaccttgcaactgcctcaaagtgcatttttgcaacagttgttgcggctgtt 27438010  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 365 - 463
Target Start/End: Original strand, 9775128 - 9775225
Alignment:
Q  365 tcactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaacggttgttgcgactgtttg 463  Q
    |||||||||||||| |||||  |||||||||||||||||||||||||| |||| ||  |||||||||||||  |||||||  ||||||||| |||||||    
T  9775128 tcactacaagaaaa-ctgcattttgcgacacttcatctgcgacccttaacttacaaccgcctcaaaatgcatttttgcaatagttgttgcggctgtttg 9775225  T

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Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 366 - 445
Target Start/End: Complemental strand, 27513831 - 27513752
Alignment:
Q  366 cactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaac 445  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||  || ||||||||| ||||  ||||||||    
T  27513831 cactacaagaaaaactgcaaattgcgacacttcatctgcgacccttactttgcaactgcctcaaagtgcatttttgcaac 27513752  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 4747703 - 4747740
Alignment:
Q  13 acaatgcaatctacattatatagttattctaatacagc 50  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  4747703 acaatgcaatctacattatgtagttgttctaatacagc 4747740  T

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Target: chr8 (Bit Score: 48; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 366 - 445
Target Start/End: Original strand, 15327849 - 15327928
Alignment:
Q  366 cactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaac 445  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||  || ||||||||| ||||  ||||||||    
T  15327849 cactacaagaaaaactgcaaattgtgacacttcatctgcgacccttactttgcaactgcctcaaagtgcatttttgcaac 15327928  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 366 - 445
Target Start/End: Original strand, 15508218 - 15508297
Alignment:
Q  366 cactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaac 445  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||  || ||||||||| ||||  ||||||||    
T  15508218 cactacaagaaaaactgcaaattgtgacacttcatctgcgacccttactttgcaactgcctcaaagtgcatttttgcaac 15508297  T

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Target: scaffold0131 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 388 - 457
Target Start/End: Original strand, 10296 - 10365
Alignment:
Q  388 tgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaacggttgttgcgac 457  Q
    ||||||||||||| ||||||||||||||||||| ||||||||  ||||  |||||||| |||| ||||||    
T  10296 tgcgacacttcatttgcgacccttaccttataactgcctcaatgtgcaactttgcaacagttgctgcgac 10365  T

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Target: scaffold0003 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 369 - 457
Target Start/End: Original strand, 111003 - 111091
Alignment:
Q  369 tacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaacggttgttgcgac 457  Q
    |||||||||| | |||  |||||||||| ||  ||||||||||||||||||| ||||||||  |||| ||| ||||| |||||||||||    
T  111003 tacaagaaaatcagcattttgcgacactgcaattgcgacccttaccttataactgcctcaatgtgcatattcgcaacagttgttgcgac 111091  T

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