View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3388R-Insertion-6 (Length: 839)
Name: NF3388R-Insertion-6
Description: NF3388R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3388R-Insertion-6 |
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Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 361 - 838
Target Start/End: Original strand, 53007435 - 53007911
Alignment:
| Q |
361 |
gctgsaattcaactcytactatcattcaactcaatataattagattatttatataaaatgtatataattagattgtaattcaaataaataagtgatttgt |
460 |
Q |
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| T |
53007435 |
gctgcaattcaactcttactatcattcaactcaatataattagattatttatataaaatgtatataattagattgtaattcaaataaataagtgatttgt |
53007534 |
T |
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| Q |
461 |
cccaagtagttaattagttctatcaaataaacgaattgttcggaagaatttgagtttgattcttaaataaaacaatcatagattagattttatttatctt |
560 |
Q |
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| T |
53007535 |
ctcaagtagttaattagttctatcaaat-aacgaattgttcggaagaatttaagttcgattcttaaataaaacaatcatagattagattttatttatctt |
53007633 |
T |
|
| Q |
561 |
tcaaccaaactttagactattagagtcnnnnnnnacctaagaaacggatgattatcatnnnnnnnttgtgattcaaataagattggaccagccaccaaac |
660 |
Q |
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| T |
53007634 |
tcaaccaaactttagactattagagtctttttttacctaagaaacggatgattatcgtaaaaaaattgtgattcaaataagattggaccagctaccaaac |
53007733 |
T |
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| Q |
661 |
tcatattcttattcaaccaattgaattggcctattcaattatatgaaatattggtgcgaagtccaaactataggctttcttaaaggctgtggtcttaaat |
760 |
Q |
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| T |
53007734 |
tcatattcttattcaaccaattgaattggcctattcaattatatgaaatattggtgcgaagtacaaactataggctttcttaaaggcagtggtcttaaat |
53007833 |
T |
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| Q |
761 |
ttgggtgccatataaatcatctaagattctaaagcactatattaggatgctgggccctatgatggttacycatcaggt |
838 |
Q |
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| T |
53007834 |
ttgggtgccatataaatcatctaagattctaaagcactatattaggatgctgggccctacgatggttactcatcaggt |
53007911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 9 - 271
Target Start/End: Original strand, 53007077 - 53007339
Alignment:
| Q |
9 |
ttgttcatgattgttggagttcatatgggaactaacaatttccggataaactaaagatttatgcttccaattcatccttttggaataaaaatcatttcca |
108 |
Q |
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| T |
53007077 |
ttgttcatgattgttggagttcatatgggaactaacaattttcggataaactaaagatttatgcttccaattcatccttttggaataaaaatcatttcca |
53007176 |
T |
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| Q |
109 |
acacctcatacacgagattgacaattgtaggaagaaaattggttgagtcataaagttaagttgattatgaaaatgttaatttgtttaatgcttcgagaaa |
208 |
Q |
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| T |
53007177 |
acacctcatacacgagattgacaattgtaggaagaaaattgattgagtcataaagttaagttgattatgaaaatgttaatttgtttaatgcttcgagaaa |
53007276 |
T |
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| Q |
209 |
tcgtatctcatatttattagtacagcaaggtgtgtttttgcagcaacatgctaaatcttttgt |
271 |
Q |
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| T |
53007277 |
tcgtatgtcatatttattagtatagcaaagtgtgtctttgcagcaacatgctaaatcttttgt |
53007339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 469 - 536
Target Start/End: Original strand, 17008178 - 17008243
Alignment:
| Q |
469 |
gttaattagttctatcaaataaacgaattgttcggaagaatttgagtttgattcttaaataaaacaat |
536 |
Q |
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| T |
17008178 |
gttaatgagttctaccaaata--cgaattgttcagaaaaatttgaatttgattcttgaataaaacaat |
17008243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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