View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3388R-Insertion-8 (Length: 663)
Name: NF3388R-Insertion-8
Description: NF3388R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3388R-Insertion-8 |
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Alignment Details
Target: chr8 (Bit Score: 615; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 9 - 656
Target Start/End: Complemental strand, 43290423 - 43289773
Alignment:
| Q |
9 |
cctcacacactaatatcactttcttctcctctaactaaat-atatatactactaaatagaacaagagagtttcttctagtgacttcatcattactacatt |
107 |
Q |
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| T |
43290423 |
cctcacacactaatatcactttcttctcctctaactaaattatatatactactaaatagaacaagagagtttcttctagtgacttcatcattactacatt |
43290324 |
T |
|
| Q |
108 |
aatcaatattccaaaccaaaaagaagagtgtgtgtg-agtg-tagttagttaacccatttaagctagaaatagaaacttcacttgaaactgtttttagtt |
205 |
Q |
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|||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43290323 |
aatcaatattccaaaccaaaaagaagagtgtgagtgtagttatagttagttaacccatttaagctagaaatagaaacttcacttgaaactgtttttagtt |
43290224 |
T |
|
| Q |
206 |
aagacaatggatgagtgtaatcatctatctctacctaaaacttcatcttcggcccatttacctgacccggttgaaaagagacccaaaagaccaagagaga |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43290223 |
aagacaatggatgagtgtaatcatctatctctacctaaaacttcatcttcggcccatttacctgacccggttgaaaagagacccaaaagaccaagagaga |
43290124 |
T |
|
| Q |
306 |
gcaaccacccggtttacagaggagttcgaatgcgggcttggggaaaatgggtatccgaaatccgcgaaccgagaaagaagaatcggatctggctcggaac |
405 |
Q |
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| T |
43290123 |
gcaaccacccggtttacagaggagttcgaatgcgggcttggggaaaatgggtatccgaaatccgcgaaccgagaaagaagaatcggatctggctcggaac |
43290024 |
T |
|
| Q |
406 |
gtttgccacgccggagatggcagcacgagcacatgacgtggcagctctcgccatcaaaggtaactccgccatactcaacttccctgaactcgccgcttca |
505 |
Q |
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| T |
43290023 |
gtttgccacgccggagatggcagcacgagcacatgacgtggcagctctcgccatcaaaggtaactccgccatactcaacttccctgaactcgccgcttca |
43289924 |
T |
|
| Q |
506 |
atgccccgacccgattcaaactcccctcgtgatgttcaagctgccgccgttaaagccgctgccatggaagttcccgatcaacaaacatcatcatctacgt |
605 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43289923 |
atgccccgacccgattcaaactcccctcgtgatgttcaagctgccgccgttaaagccgctgccatggaagttcccgatcaacaaacatcatcatctacgt |
43289824 |
T |
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| Q |
606 |
tttctccgtcgccgtcttcacattctttgtcttcatcttcatcgtcttgtt |
656 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43289823 |
tttctccgtcgccgccttcacattctttgtcttcatcttcatcgtcttgtt |
43289773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 318 - 447
Target Start/End: Original strand, 33589178 - 33589307
Alignment:
| Q |
318 |
tttacagaggagttcgaatgcgggcttggggaaaatgggtatccgaaatccgcgaaccgagaaagaagaatcggatctggctcggaacgtttgccacgcc |
417 |
Q |
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|||| ||||||||| ||||||| | |||||||||||||||||||||||||| ||||| ||||||| | ||| |||||||| ||||| | ||| ||| | |
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| T |
33589178 |
tttatagaggagttagaatgcgaacatggggaaaatgggtatccgaaatccgtgaaccacgaaagaaaagtcgaatctggcttggaacatatgctacggc |
33589277 |
T |
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| Q |
418 |
ggagatggcagcacgagcacatgacgtggc |
447 |
Q |
| |
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|| ||||| || || ||||| |||||||| |
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| T |
33589278 |
tgaaatggcggcgcgtgcacacgacgtggc |
33589307 |
T |
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Back To:
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