View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3388R-Insertion-9 (Length: 529)

Name: NF3388R-Insertion-9
Description: NF3388R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3388R-Insertion-9
NF3388R-Insertion-9
[»] chr2 (1 HSPs)
chr2 (9-518)||(37763503-37764015)


Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 9 - 518
Target Start/End: Original strand, 37763503 - 37764015
Alignment:
Q  9 gtaaatacatatactaattaaatctttgaaattaatcttgtcaaaataannnnnnnngaaatcaaaacttttttatttgacagggatcgtcatataagag 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||| |    
T  37763503 gtaaatacatatactaattaaatctttgaaattaatcttgtcaaaataattcttttttaaatcaaaacttttttatttgacagggatcgtcatataaggg 37763602  T
Q  109 ttatgattttcgtctctaaaccatcatgtgaggcggggttttcttccccgtctccatccttattggagaaaattctccgtccgtaaaccctattacagtt 208  Q
    ||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||    
T  37763603 ttatgatttccgtccctaaaccatcatgtgaggtggggttttcttccccgtctccatccttattggagaaaattctccgtctgtaaaccctaatacaatt 37763702  T
Q  209 atttttattttcacgtatatcccatttctggatacaaattaatatctgtatagtaaaatgaatttaacaatattgtgtgaagtggagaaaaactaacaag 308  Q
    |||||||||  || ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  37763703 atttttattcacatgtatatcccatttatggatataaattaatatctgtatagtaaaatgaatttaacaatattgtatgaagcggagaaaaactaacaag 37763802  T
Q  309 aataaaattgtgatggagttaataaatgcagcaagctttatattactactaccacagcacttacctatgttgttgcactcacatgaaacttacacctaat 408  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||| |||||    
T  37763803 aataaaattgtcatggagttaataaatgcagcaagctttatattactactac-----cacttacctatgttgttgcactcacatgaaacttacaactaat 37763897  T
Q  409 gacaacgacttaaaccatcccacaaggacatagtaattaatgcaattatatgaaaagacatgcttgacttaatgtatggaaga--------taggccctt 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||    
T  37763898 gacaacgacttaaaccatcccacaaggacatagtaattaatgcaattatatgaaaagacatgcttgacttaatgtatggaagagcgtccactaggccctt 37763997  T
Q  501 cattactacattttccat 518  Q
    ||||||||||||||||||    
T  37763998 cattactacattttccat 37764015  T

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