View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3388_high_1 (Length: 511)
Name: NF3388_high_1
Description: NF3388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3388_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 38 - 494
Target Start/End: Original strand, 51770691 - 51771146
Alignment:
| Q |
38 |
caaatttcattataccatcaagaaagaaagaa----gtgttgttggtgaaatgaatgaatgaaagaaaaggtagtaagtaatatttgnnnnnnnnnnnnn |
133 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
51770691 |
caaatttcattataccatcaagaaagaaagaaagaagtgttgttggtgaaatgaatgaatgaaagaaaaggtagt----aatatttgtatataatataat |
51770786 |
T |
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| Q |
134 |
nnnnnnngcctggcttcaacctgtctgccttaatggacgcaaatgcaatggtacgatgtcaatgtctgatgagcaacgaggttgttgttggatttgcaaa |
233 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51770787 |
at-----gcctggcttcaacctgtctgccttaatggacgcaaatgcaatggtacgatgtcaatgtctgatgagcaacgaggttgttgttggatttgcaaa |
51770881 |
T |
|
| Q |
234 |
gagaaccaccacctgtttgtgagcaagggtataagggtcattgcatgttgctgctagnnnnnnnnnnnnnnnnnnngtggaagaagatgaaacaaccacc |
333 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||| |
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| T |
51770882 |
gagaaccaccacctgtttgtgagcaagggtataagggtcattgcatgctgctagtactactactactactactactgtggaagaagatgaaacaaccacc |
51770981 |
T |
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| Q |
334 |
gccaccgtgtccaccacaaacacatccattgctggtggctgtaaaacagaatgaaaatgatgatagtcaagccaagccttcttcttgtctttcagtcgat |
433 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51770982 |
gccaccgtgtccaccacaaacacatccattgctggtagctgtaaaacagaatgaaaatgatgatagtcaagccaagccttcttcttgtctttcagtcgat |
51771081 |
T |
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| Q |
434 |
aatgatgttattgctgctaattgcttctctcact----cactctccctttcttgatgttactact |
494 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
51771082 |
aatgatgttattgctgctaattgcttctctcactcacacactctccctttcttgatgttactact |
51771146 |
T |
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